mRNA_H-elongata_contig148115.3244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148115.3244.1
Unique NamemRNA_H-elongata_contig148115.3244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.990e-63
Identity = 108/143 (75.52%), Postives = 128/143 (89.51%), Query Frame = 1
Query:    1 QVRLDGPDPQSSIPVNTDDMAVPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGEQ 429
            QVRLDG +P SSIPVN+DD+AVPFETPLFKGRLL+RV GL       GDGAQ YFRGKKRL+QC+V QG FKKE+PFDR YTGQA++RPFT++PAKWL+RSAF++IRRLSPALREDITG+RPYMVSPLAAT+Q++RAE PG++
Sbjct:  950 QVRLDGHEPNSSIPVNSDDIAVPFETPLFKGRLLVRVAGLP------GDGAQDYFRGKKRLMQCAV-QGEFKKELPFDRVYTGQAYDRPFTQLPAKWLIRSAFSLIRRLSPALREDITGERPYMVSPLAATAQSMRAEAPGDE 1085          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S4CGR5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGR5_9EUGL)

HSP 1 Score: 111 bits (277), Expect = 2.340e-27
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   70 FETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGE 426
            FET +FKG + +R+K    G P Q D    YF+GK R +Q +V QG FKKE+P D  +TG+   +P   +P KW+V +A  V+R+LSP +RED+ GDRPY++S LAAT+QA+R +  GE
Sbjct:  115 FETAIFKGCMQVRIKDCP-GAP-QTD----YFQGKARTIQMAV-QGQFKKELPMDTVFTGEEQHQPLANLPPKWVVSTALGVVRKLSPGMREDVQGDRPYVLSFLAATAQALRCDASGE 226          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: K8EQ44_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQ44_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.390e-22
Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   37 IPVNTDDMAVPFETPLFKGRLLMRVKGLTSGVPDQ--GDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGEQ 429
            +P+N D   +   T  F G+LL+R + + S   D+   D  + YF  KKR  Q  VQ    +K +      TG  FE  F ++PA+WLV +A  VIR+L+P L  +ITG++P++ +PL AT+Q +RA+ PGE+
Sbjct:  105 LPIN-DTRGIEIRTNAFAGKLLVRCRDVPSREGDEEGNDVTKKYFANKKRTFQTVVQGRFLRKGIKCSEVVTGHEFESRFRRIPARWLVSTALKVIRKLTPGLEANITGNKPFIYAPLCATAQVLRADVPGEE 236          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S3Y031_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y031_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 3.370e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  160 YFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGEQ 429
            YFRG+ R  Q +V QG FK  +      TGQA+ RPF ++PA+WLVR+AF +I++++P L+E+I+G  P ++SPL ATSQA+  E PG +
Sbjct:   10 YFRGRSRRFQVAV-QGEFKVPVAAAALATGQAYRRPFRRLPARWLVRAAFVLIKKIAPTLKEEISGPFPTLLSPLLATSQAVLVERPGAE 98          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7R9TG78_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TG78_9VIRI)

HSP 1 Score: 92.8 bits (229), Expect = 1.640e-19
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   64 VPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPG 423
            VPFE+ LF+G +L+R++ + S  P + DGA  YF  +KR +   V QG FK+E+    A +G  FERP  ++P +W++ +A A IR+L+P  R D+ G+RP + + L AT+Q I  E PG
Sbjct:  161 VPFESELFEGSVLLRLRDVPSEDPRR-DGA--YFANRKRRMHAVV-QGRFKEEVSLAEAVSGHEFERPLRRLPPQWVLSAASAFIRKLAPGARIDLLGERPRVYALLGATAQTISVEAPG 276          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S3BXW1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BXW1_9VIRI)

HSP 1 Score: 92.4 bits (228), Expect = 4.340e-19
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   64 VPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPG 423
            +PFE+ LF G LL+R+KG+ S   D   G  AYF G+KRL Q  V QG FK+++      TG  F +P  ++P  W+V +  A IRRL+P  R ++ G    +++ L ATSQ +  E PG
Sbjct:  326 IPFESELFVGTLLVRLKGVPS---DDPSGDAAYFMGRKRLFQAIV-QGRFKEDIAVSDVVTGHEFTKPLRRLPPSWVVSAGSAFIRRLAPGARIELAGKSARVLALLGATSQTLSVEAPG 441          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S2A7Y3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7Y3_TRICV)

HSP 1 Score: 89.4 bits (220), Expect = 1.240e-18
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   58 MAVPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKE-MPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAI 405
            + V FE+PLF G LLMR++G   G P   D  + YF G  R  Q  V +G FK+  +P     TGQ   RP  K+P K+++R A  VI   +P L+  + G RP  VSPL +T Q+I
Sbjct:   44 LVVDFESPLFVGTLLMRIRGSVGGTPHPYDDTRGYFAGANRRYQAVV-RGVFKRGGIPMTECVTGQVMLRPLGKLPPKFVLRGALKVIGYFAPQLKAKLDGPRPSCVSPLGSTPQSI 159          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S0Y763_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y763_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.980e-17
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   37 IPVNT------DDMAVPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITG-DRPYMVSPLAATSQAIRAEE 417
            +PVN       + + V FE+ LF+G  L+R++      PD  D  + YF+G  R  Q  + +G FKK +PF    TG   +R F K+P+KW+++ A  V+   +P L   + G ++PY V+PL +T Q I  ++
Sbjct:  158 LPVNNGNEKPGESLVVDFESELFEGTFLLRLRHTNGTTPDPYDDTKGYFKGMNRRYQACI-RGRFKKALPFTELTTGFKLDRTFGKLPSKWVLKGALKVVSFFAPQLDIKLEGVEQPYSVTPLGSTPQCINVDD 290          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A1E7FB20_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB20_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.390e-17
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   52 DDMAVPFETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAI 405
            + + V FE+ LF+G LL+R++      P+  D    YF+G  R  Q  + +G FKK  PF    TG  F+R F K+P KW+++ A  VI   +P L   +  DRP  +SPL +T Q I
Sbjct:   73 ESLVVDFESDLFEGSLLLRLRYAEGTTPEPYDDNIGYFKGVNRRYQACI-RGRFKKSTPFTELVTGLRFDRRFGKLPPKWILKGALKVISFFAPQLDTKVDVDRPTSLSPLGSTPQCI 189          
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Match: A0A7S2K0P5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0P5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.010e-17
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   70 FETPLFKGRLLMRVKGLTSGVPDQGDGAQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVRSAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGEQ 429
            FET LF G+ L+R++ L +    + D    YF G+KRL QC V QG FKKEM     + G+ +E+P  + P  ++ +     +RR++P +  D+  D P +++PLA + Q +RA+  G++
Sbjct:   72 FETHLFSGKALIRIRNLETSDNPKSDAE--YFAGRKRLSQCIV-QGRFKKEMKLSDVFCGREYEKPMKQKPPPFVNKIVQTFLRRVAPGVEIDLCSDNPKVLAPLAGSVQGLRADAEGQE 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148115.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTP0_ECTSI2.990e-6375.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4CGR5_9EUGL2.340e-2748.74Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
K8EQ44_9CHLO3.390e-2239.10Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7S3Y031_HETAK3.370e-2048.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9TG78_9VIRI1.640e-1942.50Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S3BXW1_9VIRI4.340e-1941.67Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S2A7Y3_TRICV1.240e-1841.88Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0Y763_9STRA2.980e-1734.33Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FB20_9STRA3.390e-1738.14Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S2K0P5_9STRA6.010e-1735.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148115contigH-elongata_contig148115:425..1152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue4.4e-55
Seed eggNOG ortholog2880.D8LTP0
EggNOG OGs2CZJM@1,2SAPD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.6357932-CDS-H-elongata_contig148115:424..6521622929877.6357932-CDS-H-elongata_contig148115:424..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148115 425..652 -
1691679192.2843347-CDS-H-elongata_contig148115:424..6521691679192.2843347-CDS-H-elongata_contig148115:424..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148115 425..652 -
1622929877.6527452-CDS-H-elongata_contig148115:951..11521622929877.6527452-CDS-H-elongata_contig148115:951..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148115 952..1152 -
1691679192.2994995-CDS-H-elongata_contig148115:951..11521691679192.2994995-CDS-H-elongata_contig148115:951..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148115 952..1152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148115.3244.1prot_H-elongata_contig148115.3244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148115 425..1152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148115.3244.1

>prot_H-elongata_contig148115.3244.1 ID=prot_H-elongata_contig148115.3244.1|Name=mRNA_H-elongata_contig148115.3244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
QVRLDGPDPQSSIPVNTDDMAVPFETPLFKGRLLMRVKGLTSGVPDQGDG
AQAYFRGKKRLVQCSVQQGCFKKEMPFDRAYTGQAFERPFTKVPAKWLVR
SAFAVIRRLSPALREDITGDRPYMVSPLAATSQAIRAEEPGEQ
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mRNA from alignment at H-elongata_contig148115:425..1152-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148115.3244.1 ID=mRNA_H-elongata_contig148115.3244.1|Name=mRNA_H-elongata_contig148115.3244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=728bp|location=Sequence derived from alignment at H-elongata_contig148115:425..1152- (Himanthalia elongata Himel1 dioecious)
CAGGTACGACTGGACGGCCCCGACCCCCAATCTTCCATTCCCGTCAACAC GGACGACATGGCGGTTCCCTTCGAAACCCCGCTGTTTAAGGGCCGCCTCC TCATGAGGGTCAAGGGCCTCACCTCCGGGGTGCCCGATCAGGGCGACGGG GCGCAGGCGTACTTCCGAGGGAAGAAGAGGCTCGTGCAGTGCTCTGTACA GGTGCCGCCACCGCTGCTGCTGCTGCTCCTACTTTTGTCGTTGCTGCTGC TGCTGCTACTGTTGCTACTGTTGTTGCTTTTAATATACCACTTTATACTT TTGATGCTTCGAAGATGCTTCTCGAGCTCTAGTCGATATGACGATAACGC CTTCATACAGATACATTTTGTTGTTGTTGCTCTTTTTGTGATCCTTATTT ATGTTGTTGTGCTGCTTTTTGTATTCATCCTGACACTGTTTTTTTGTTTG TTTGTTTATATTTCGGTGCTTGTTTATTTATATCGTGATGCTGACTCCAG CAGGGGTGCTTCAAGAAGGAGATGCCCTTCGATCGCGCGTACACGGGTCA GGCCTTCGAGCGGCCTTTTACCAAGGTGCCCGCCAAGTGGCTCGTCCGCT CGGCTTTCGCGGTGATAAGGAGGCTATCCCCCGCCCTGCGCGAGGACATT ACGGGGGACCGGCCCTACATGGTCAGCCCGCTCGCGGCAACTTCGCAGGC TATTCGTGCCGAGGAGCCCGGTGAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig148115:425..1152-

>mRNA_H-elongata_contig148115.3244.1 ID=mRNA_H-elongata_contig148115.3244.1|Name=mRNA_H-elongata_contig148115.3244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig148115:425..1152- (Himanthalia elongata Himel1 dioecious)
CAGGTACGACTGGACGGCCCCGACCCCCAATCTTCCATTCCCGTCAACAC
GGACGACATGGCGGTTCCCTTCGAAACCCCGCTGTTTAAGGGCCGCCTCC
TCATGAGGGTCAAGGGCCTCACCTCCGGGGTGCCCGATCAGGGCGACGGG
GCGCAGGCGTACTTCCGAGGGAAGAAGAGGCTCGTGCAGTGCTCTGTACA
GCAGGTACGACTGGACGGCCCCGACCCCCAATCTTCCATTCCCGTCAACA
CGGACGACATGGCGGTTCCCTTCGAAACCCCGCTGTTTAAGGGCCGCCTC
CTCATGAGGGTCAAGGGCCTCACCTCCGGGGTGCCCGATCAGGGCGACGG
GGCGCAGGCGTACTTCCGAGGGAAGAAGAGGCTCGTGCAGTGCTCTGTAC
AGCAGGGGTGCTTCAAGAAGGAGATGCCCTTCGATCGCGCGTACACGGGT
CAGGCCTTCGAGCGGCCTTTTACCAAGGTGCCCGCCAAGTGGCTCGTCCG
CTCGGCTTTCGCGGTGATAAGGAGGCTATCCCCCGCCCTGCGCGAGGACA
TTACGGGGGACCGGCCCTACATGGTCAGCCCGCTCGCGGCAACTTCGCAG
GCTATTCGTGCCGAGGAGCCCGGTGAGCAGCAGGGGTGCTTCAAGAAGGA
GATGCCCTTCGATCGCGCGTACACGGGTCAGGCCTTCGAGCGGCCTTTTA
CCAAGGTGCCCGCCAAGTGGCTCGTCCGCTCGGCTTTCGCGGTGATAAGG
AGGCTATCCCCCGCCCTGCGCGAGGACATTACGGGGGACCGGCCCTACAT
GGTCAGCCCGCTCGCGGCAACTTCGCAGGCTATTCGTGCCGAGGAGCCCG
GTGAGCAG
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