mRNA_H-elongata_contig148092.3242.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 137 bits (345), Expect = 2.120e-36 Identity = 66/158 (41.77%), Postives = 106/158 (67.09%), Query Frame = 3
Query: 222 GGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
GGGIKL+ + DAD+ + SVSGG + GG++SWFSR QK +++++EYVAL ++V E+ FLRQ+ FM P + +P I I EDN+G+I++A+N SN ++H+D++HH +R+ ++ + + + S Q AD LTKS+ +F+ H F++N
Sbjct: 68 GGGIKLAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMN 225
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.720e-34 Identity = 65/163 (39.88%), Postives = 103/163 (63.19%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
+RGT G L + DAD+ + SVSGG + GGA+SWFSR QK +++++EYVAL E+V + FLRQ+ FM P + +P I + EDN+G+I++A+N SN ++H+D++HH +R+ ++ + + + S Q AD LTKS+ F+ H F++N
Sbjct: 52 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMN 214
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.150e-33 Identity = 63/163 (38.65%), Postives = 107/163 (65.64%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
RRG+ G+ + + DADY + SVSGG +M GG +SWFSR QK +++++EYV+LA+++ E+ FLRQV+ F+ P +P I + EDN+G+I++A+N SN ++H+D++HH +R+ + + I + S QHAD LTK+++ F+ H ++++
Sbjct: 90 FRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMS 252
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.220e-33 Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
+RGT G+ L + DAD+ T SVSGG + GGA+SWFSR QK +++++EYVAL ++V E+ FLRQ FM P + +P I I EDN+G+I++A+N SN ++HVD++HH+VR+ ++ + + + Q AD LTKS+ F+ H F++N
Sbjct: 265 FQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVMN 427
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.400e-33 Identity = 65/163 (39.88%), Postives = 106/163 (65.03%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
RRG+ G+ + ++DADY + SVSGG +M GG ISWFSR QK +++++EYV+LA+++ E+ FLRQV FM P +P I + EDN+G+I++A+N SN ++H+D++HH +R+ + + I + S QHAD LTK++ F+ H ++++
Sbjct: 274 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 436
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE) HSP 1 Score: 130 bits (327), Expect = 5.040e-33 Identity = 65/163 (39.88%), Postives = 102/163 (62.58%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
+RGT G L + DAD+ + SVSGG + GGA+SWFS QK +++++EYVAL ++V E+ FLRQ+ FM P + +P I I EDN+G+I++A+N SN ++H+D++HH +R+ ++ + + S Q AD LTKS+ F+ H F++N
Sbjct: 128 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFVMN 290
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE) HSP 1 Score: 127 bits (320), Expect = 6.100e-33 Identity = 64/163 (39.26%), Postives = 101/163 (61.96%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
+RGT G L + DAD+ + SVSGG + GGA+SWFSR QK +++++EYV+L + V E+ FLRQ+ FM P + +P I I EDN+G+I++A+N SN ++H+D++HH +R+ ++ + + S Q AD L KS+ F+ H F++N
Sbjct: 40 FQRGTVEGFSLQGYTDADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPKSLSEDAFESHRDFVMN 202
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 135 bits (339), Expect = 8.470e-33 Identity = 65/163 (39.88%), Postives = 106/163 (65.03%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
RRG+ G+ + ++DADY + SVSGG +M GG ISWFSR QK +++++EYV+LA+++ E+ FLRQV FM P +P I + EDN+G+I++A+N SN ++H+D++HH +R+ + + I + S QHAD LTK++ F+ H ++++
Sbjct: 448 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 610
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.270e-32 Identity = 63/160 (39.38%), Postives = 102/160 (63.75%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARF 683
RG G+ + ++DADY + C SVSGG +M GG ++WFSR QK +++++EYVA A+++ E+ FLRQV FM P +P I + EDN+G+I++A N +N ++H+D++HH +R+ ++ + I + S QHAD LTK++ ++F H F
Sbjct: 249 FERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.280e-32 Identity = 61/163 (37.42%), Postives = 101/163 (61.96%), Query Frame = 3
Query: 207 LRRGTGGGIKLSAWIDADYGTCLDTCCSVSGGAMMMAGGAISWFSRVQKVTAAASSKSEYVALAEIVNELRFLRQVKEFMTPPIDVP-IKIHEDNEGSIKMAKNHFSNRRTRHVDIKHHIVRDAIDGGVVHIEYARSGEQHADILTKSVDVKTFKKHARFLLN 692
RG G+ + ++DADY + SVSGG +M GG ++WFSR QK +++++EYVA+A+++ E+ FLRQV FM P +P I + EDN I++A N +N ++H+D++HH +R+ ++ + I + S QH D LTK++ ++F H F++N
Sbjct: 5 FERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMN 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148092.3242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig148092.3242.1 >prot_H-elongata_contig148092.3242.1 ID=prot_H-elongata_contig148092.3242.1|Name=mRNA_H-elongata_contig148092.3242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MRQIPYRETIGALMWAPTMTRPDIPFAAHQLEKFNDNPGPTHWRAAQKALback to top mRNA from alignment at H-elongata_contig148092:367..1094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig148092.3242.1 ID=mRNA_H-elongata_contig148092.3242.1|Name=mRNA_H-elongata_contig148092.3242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=728bp|location=Sequence derived from alignment at H-elongata_contig148092:367..1094+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig148092:367..1094+ >mRNA_H-elongata_contig148092.3242.1 ID=mRNA_H-elongata_contig148092.3242.1|Name=mRNA_H-elongata_contig148092.3242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig148092:367..1094+ (Himanthalia elongata Himel1 dioecious)back to top |