mRNA_H-elongata_contig14808.3240.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: A0A6H5KRN7_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRN7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 6.230e-20 Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEEFPVAGLFVSGMSCPQV 222
RA E +TN++D+ T+ V+A+ GL LL+ EDIP F++GHE GAL+AFE C+R ++EFPV L VS MSCPQV
Sbjct: 159 RAREDAMTNLSDIVTMVVEAICGLHLLTH-EDIPYFIYGHEFGALVAFETCRRVQDEFPVKALIVSSMSCPQV 230
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: UPI001BDA2871 (alpha/beta fold hydrolase n=1 Tax=Kineosporia corallincola TaxID=2835133 RepID=UPI001BDA2871) HSP 1 Score: 55.1 bits (131), Expect = 1.090e-6 Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEE-FPVAGLFVSGMSCPQV 222
R E PL ++A +A L L +D+P F+FGH +GA LAFE+ +R E PVA LFVSG P V
Sbjct: 57 RGREAPLPDLATLADRLAPVLLPL------DDLPLFLFGHSMGASLAFELTRRLEAAGLPVARLFVSGRRAPSV 124
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: UPI0004C471DE (alpha/beta fold hydrolase n=1 Tax=Lentzea aerocolonigenes TaxID=68170 RepID=UPI0004C471DE) HSP 1 Score: 54.3 bits (129), Expect = 1.910e-6 Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEEFPVAGLFVSGMSCPQVGGTRFARGMTPSTIL 267
R E P T +++ AVD L + G++ +FGH LGA+LAFEM R E F V G+FVSG P R A G++ L
Sbjct: 41 RFAEPPYTTVSE----AVDGLHPEIVELLGDEREVALFGHSLGAVLAFEMALRLESSFTVRGVFVSGSPGPWTRRARRASGLSDGEFL 124
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: UPI00036D2C1A (alpha/beta fold hydrolase n=1 Tax=Salinispora TaxID=168694 RepID=UPI00036D2C1A) HSP 1 Score: 53.9 bits (128), Expect = 3.110e-6 Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 1 RRADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEEFPVAGLFVSGMSCPQV 222
RR D+ LT++AD+A A AL S D P ++FGH LGAL+AFE+ +R + + L SG + P +
Sbjct: 55 RRDDQPALTSVADLAAAAAVAL------STAMDRPSYLFGHSLGALVAFEVARRLRDHPQLYRLIASGCAAPSL 122
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: A0A840J6K7_9PSEU (Surfactin synthase thioesterase subunit n=1 Tax=Amycolatopsis jiangsuensis TaxID=1181879 RepID=A0A840J6K7_9PSEU) HSP 1 Score: 53.5 bits (127), Expect = 4.160e-6 Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEE-FPVAGLFVSGMSCPQVG 225
R D R I D+ LA D L + L ++P +FGH +GA +AFE+ +RFE E PVAGLFVSG P G
Sbjct: 59 RQDRRGEPPIDDLGVLA-DRLHEV--LRAEPELPLTLFGHSMGAAVAFEVARRFEAEGTPVAGLFVSGRRGPATG 130
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: A0A0N1NC49_9ACTN (Thioesterase n=1 Tax=Actinobacteria bacterium OV450 TaxID=1592328 RepID=A0A0N1NC49_9ACTN) HSP 1 Score: 52.0 bits (123), Expect = 1.630e-5 Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEE-FPVAGLFVSGMSCP-QVGGT 231
R D R I D+ TLA A + S D P +FGH +GAL+AFE +R EE P AGL VSGM P + GGT
Sbjct: 59 RQDRRSEPCIEDIGTLAEHAAEEVLGWS---DRPVTLFGHSMGALIAFETARRLEERGSPAAGLVVSGMRAPSRRGGT 133
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: UPI0019D2D658 (alpha/beta fold hydrolase n=1 Tax=Streptomyces epipremni TaxID=2053013 RepID=UPI0019D2D658) HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5 Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 1 RRADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEEFPVA-GLFVSGMSCP 216
RRA+E PLT++ D A A DAL+ D+P FGH +GA++A+E+ + F++ V GLFVSG P
Sbjct: 81 RRAEE-PLTSVQDFARNAFDALQPWA------DVPLVFFGHSMGAVIAYEVARLFDDADTVLLGLFVSGRRGP 146
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: UPI001C68B665 (alpha/beta fold hydrolase n=1 Tax=Streptomyces sp. W18L9 TaxID=2749088 RepID=UPI001C68B665) HSP 1 Score: 51.6 bits (122), Expect = 1.830e-5 Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 13 ERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEE--FPVAGLFVSGMSCPQVGGTRFARGM 249
E PLT++ A A D + G GL + + VFGH LGA+LAFE+ +R P+ GLFVSG P G T+ A G+
Sbjct: 41 EPPLTDVHSAADAAADEVAG-GLEGASQVL---VFGHSLGAVLAFELVRRLAATGTVPLTGLFVSGSPGPWSGRTQRATGL 117
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: A0A1C6PCE1_9ACTN (Pyochelin biosynthetic protein PchC n=4 Tax=Streptomyces TaxID=1883 RepID=A0A1C6PCE1_9ACTN) HSP 1 Score: 51.6 bits (122), Expect = 1.960e-5 Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEE-FPVAGLFVSGMSCP 216
R E P ++IA+MAT L+ L + PC +FGH LGAL+A+E + +E PV LFVSG P
Sbjct: 51 RIAEDPASSIAEMATCVATELQRL------DPAPCALFGHSLGALVAYETARELQERGTPVDCLFVSGAPAP 116
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Match: Q6V1P1_9ACTN (Plm8 n=10 Tax=Streptomyces TaxID=1883 RepID=Q6V1P1_9ACTN) HSP 1 Score: 51.6 bits (122), Expect = 2.080e-5 Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 4 RADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEMCKRFEEEF---PVAGLFVSGMSCP 216
R DE +T++ +A L D LR Q D P FGH +GALLAFE+ +RFE E PVA LF+SG P
Sbjct: 63 RRDEPCVTDLHVLADLVFDRLR------QCADRPMAFFGHSMGALLAFEVTRRFERELNTSPVA-LFLSGRRAP 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14808.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14808.3240.1 >prot_H-elongata_contig14808.3240.1 ID=prot_H-elongata_contig14808.3240.1|Name=mRNA_H-elongata_contig14808.3240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp RRADERPLTNIADMATLAVDALRGLGLLSQGEDIPCFVFGHELGALLAFEback to top mRNA from alignment at H-elongata_contig14808:7564..7887- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14808.3240.1 ID=mRNA_H-elongata_contig14808.3240.1|Name=mRNA_H-elongata_contig14808.3240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig14808:7564..7887- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14808:7564..7887- >mRNA_H-elongata_contig14808.3240.1 ID=mRNA_H-elongata_contig14808.3240.1|Name=mRNA_H-elongata_contig14808.3240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig14808:7564..7887- (Himanthalia elongata Himel1 dioecious)back to top |