mRNA_H-elongata_contig14798.3235.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14798.3235.1
Unique NamemRNA_H-elongata_contig14798.3235.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: D7FQV0_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI)

HSP 1 Score: 427 bits (1097), Expect = 3.080e-142
Identity = 235/407 (57.74%), Postives = 279/407 (68.55%), Query Frame = 1 
Query:   31 AMRYAAWTLLLSDHLAWSFRPDPFCQVMSLTGFNQRTRRSIVRERTCGTTIRMLGLGRAPPP-PERKGT-----GRCNAITSATGPILKLKGLLAVFLAATCVLAAEPGPALSAEFIPTPR----------TPASVPTTEEGSVVPTTKLEGELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELADGLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENLKGFNQRQKELDARPLEAPKLVT 1203
            AMR    TL+L   L WSF+       +    F +R R S+    + G T  +    R+  P P R  T     G C A   A+ P+L LK +LA  +AA  VLAA+PG AL+   +P             T  S  + E   VVPT KLEGELA QF+KAQAAG VQQFD+AK  YNQV+KYAPGYVYGWSNRANVLIAEGDLK A+SDYD+AL+LA+G+ +PDKW+IYLNR                L+QAA LN  KDLY LANRAQA ER+GDW  AL DYEGA+NVQPGNVQPWWIR+SLVLFQEGRDFDSLA+L+R+Q+KFEGVGEVQAA+TA+EFGRGD  AAE AWRGIN+ DQQMYLK SYL+DQLKWPPR++E+LK F++ +KE D RP E     T
Sbjct:   27 AMRLVVLTLVLCCPLGWSFQ-------IGSPAFTRRGR-SVTNPTSSGNTKNVCEALRSTSPWPNRTNTRISSRGLCGADEVASEPLLALKDVLAGLVAAAFVLAADPGTALADTAMPAASGLPSGSVVEATATSTTSAEVQEVVPTIKLEGELAAQFKKAQAAGSVQQFDKAKKLYNQVVKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRXXXXXXXXXXXXXXXXLNQAAKLNTSKDLYTLANRAQAFERRGDWAKALADYEGAINVQPGNVQPWWIRYSLVLFQEGRDFDSLAFLKRVQAKFEGVGEVQAAMTAIEFGRGDMKAAEGAWRGINIVDQQMYLKDSYLKDQLKWPPRVVESLKSFDRERKEADTRPAEKTLATT 425
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: A0A835YLD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD8_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.900e-65
Identity = 112/247 (45.34%), Postives = 157/247 (63.56%), Query Frame = 1 
Query:  421 TTKLEGELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELAD---GLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENLKGFNQ 1152
            TT + GE+A QF+KA   G V  FD+A   Y+ VIKYAPGY+YG+SNR NV IA+GDL+ AI DY  A++L +   G+ +PD W+I+L                         N++ D   LANRAQA+ER+G+W  A+ DY  A+ ++PG+VQPWW+RF+L LFQ G DFD+LAY RR+ +KF    E  AA+TA+ +GRGD   A++ W  I L ++  YL   YL  QL+WPP+++++L  F +
Sbjct:  115 TTDVRGEVADQFRKANNYGSVADFDKAFKLYSSVIKYAPGYIYGYSNRGNVQIAKGDLEAAIRDYTAAIKLCEETEGIKVPDLWLIHLXXXXXXXXXXXXXXXXXXXXXXXXXNRKSDSLTLANRAQAYERQGEWPKAVADYGAAIALKPGDVQPWWLRFALSLFQAGADFDALAYARRIATKFGDAPEPLAALTAILYGRGDTVEAQKTWSQIALQERDRYLDAQYLSQQLRWPPKVVDSLLEFGR 361
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: A0A7S2SDF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDF4_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.110e-50
Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 1 
Query:  493 DQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELADGLSLP----DKWVIYLNRGTSFLALGENDR-ALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENLKGFNQ 1152
            D+A   Y+++I+  P Y Y +SNR N+ +  GDL+ A+ DYD+A+EL    S      + W++YLNRGT+ LALG++ + AL DL+ AA + +  D  +L +RAQA+ER GDW +A  DY+ A++++P +V+PWW+RFSLVLFQ GRD D++A  RR++SKF G  EV  A+  +         A + W       +Q Y   ++LE  ++WPPR +   KG  +
Sbjct:   44 DKAFKLYSKIIELEPSYPYAFSNRGNLDVLRGDLRLALQDYDQAVELLSAESSARLNGEAWLVYLNRGTTRLALGDDPKQALVDLNLAAAIRRSPDTLLLTSRAQAYERLGDWASAAADYQAALSLKPNDVEPWWLRFSLVLFQLGRDVDAVALARRVRSKFSGEAEVGIALACMLVDARQLTEATKLWFDQPSIQRQRYSDVAFLETAVRWPPRAVSVAKGLGR 268
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: A0A2V3J951_9FLOR (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J951_9FLOR)

HSP 1 Score: 172 bits (435), Expect = 1.550e-45
Identity = 91/241 (37.76%), Postives = 145/241 (60.17%), Query Frame = 1 
Query:  424 TKLEGELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELADGLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENLKGF 1146
            T+L G  A  F  A+        D A N YNQ+++ AP +   +SNRAN+L+A G  + A +DYD +L LA   +  D WV+++NRG ++LA+G+   AL D++ A  L +  D  +++NRA  +E  G W  A+ DY+ A+  +  +VQP+WIR++L LFQ  +  ++LA L+R+ ++F G  +V  A+  V + R DFAAAE  W  ++    +++  + +L D+ KWPPR +E L  F
Sbjct:   66 TRLSGARAQTFATARRTAAAGDLDAALNLYNQLVEQAPNFAPAYSNRANILVARGRYQDARTDYDTSLRLAPLDT--DAWVVHVNRGATYLAMGDASAALDDMNVAHEL-RGDDPTVMSNRAAVYEVLGKWDNAIRDYQKAL--RSNDVQPFWIRYALALFQRNKSVEALAILKRVAARFPGFNDVHVAMALVYYDRNDFAAAETEWSAVDR--PKLFENERFLRDERKWPPRAVETLNNF 299
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: W7TJE8_9STRA (Peptidase s41 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.110e-39
Identity = 86/218 (39.45%), Postives = 128/218 (58.72%), Query Frame = 1 
Query:  406 GSVVPTTKLEGELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELADGLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINL 1059
            G V P  +L  E    F++A+ A    +F++A   Y++V + APGY Y WSN+ N  IA GDL+  +  Y +A+EL    +  D W++YLN+ T+ LAL   D A+ DLD A +L  + D+ + AN+  A ERKGD   AL +YE AV  +P +VQPWW+R+S+VLFQE +D  ++  +R++  KF  V E + A+ +   G G     ER    + L
Sbjct:  158 GRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKT-GDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRL 374
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: R7QMM9_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMM9_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 3.780e-35
Identity = 85/244 (34.84%), Postives = 142/244 (58.20%), Query Frame = 1 
Query:  424 TKLEGELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELADGLSLPDKWVIYLNRGTSFLALGENDR-ALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENLKGFNQ 1152
            T+  G++A  F  A+         +A + Y+ + K  P +   +SNR N+  A+     AI++YD++LELA   +  D WV+++NRG + LA G++   AL D++ A  L    D+ IL+NRA   E  G W  A+ DY+ A+  Q  +VQP+W R+ LVLFQ  + +++L+ L+R+ ++F+ V +V AA+  + F RGD A AE  W  ++    +++  K +L  + KWPPR +E ++ F +
Sbjct:  141 TRAAGKVAQNFALARRQALAGDIPEALSTYDAITKSDPDFAPAYSNRGNIFAAQKKFDQAITEYDRSLELAPLDN--DSWVVFVNRGVTKLARGDDPYIALADMNIANELRAGNDI-ILSNRAGVWEVMGKWDNAIRDYQAAL--QSNDVQPFWERYGLVLFQRNKSYEALSILKRVATRFD-VSDVHAAMAVIYFDRGDIAEAETQWSLVDR--PRLFESKKFLVSERKWPPRAVEAMENFRK 376
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: B5Y3F0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3F0_PHATC)

HSP 1 Score: 121 bits (303), Expect = 8.690e-27
Identity = 79/239 (33.05%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  436 GELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELA--------DGLSLP---DKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPP 1119
            G+    F +A+A         A+  Y +V K +P ++YGWSN AN   A GDL+ A   Y  A++L         +G  +    D +V+ LNRG+  L  G    AL DL Q+ +L  R D  +L N A+A E  G +  A  DY  A+++    V P+W+R SLV FQ G        ++R++++F    EV+AA       RGD  A +R +  I    +  Y+ ++YL   + WPP
Sbjct:   72 GDAKKLFNEARALESQGNMAAAQRLYTKVTKISPRFIYGWSNLANTQTALGDLRSADQAYSIAIDLCNENLQTTEEGFGIKRCNDLYVLLLNRGSLRLNDGRPKEALADLQQSDLLRGRPDSTVLQNLARAKELNGLYKQADNDYTVAISMTANEVNPFWLRSSLVKFQLGDIQGGYDLMKRVENRFPEAPEVRAAYACFLAARGDQVAGQRKYLEIPDRARLKYVDQNYLTRTISWPP 310
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: A0A7S4ETF5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETF5_CHRCT)

HSP 1 Score: 120 bits (302), Expect = 1.380e-26
Identity = 74/215 (34.42%), Postives = 123/215 (57.21%), Query Frame = 1 
Query:  520 VIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELAD-GLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRG-DFAAAERAWRGINLGDQQMYLKKSYLEDQL----KWPPRMIENLKGF 1146
            V ++AP Y  G++NRANV +A GDL+GA+ DYD AL+L   G S+   WV  LNRG +  ALG+ + AL DL +A  L++   L +L   +  H + G +  A +DY   VN +P +VQP+W+R+++ LF+  R  ++L  +RR+ +KF+   E   A +++ +  G D   +E   R   L  Q      ++++++     +WPP+ +   + F
Sbjct:  122 VEEFAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPRGNSV---WVNLLNRGATRSALGDTELALSDLQEAVRLSQGDKLALLGRGSVLH-KLGRYAEAASDYGAVVNKRPLDVQPFWLRYAIDLFEADRRLEALGIVRRVANKFDLEPECTLAASSMLWSGGTDTERSEAMLRWKQLPAQMRTRSLAFVDEKTFSAREWPPKAVAAAEEF 332
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BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: K0R0W7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0W7_THAOC)

HSP 1 Score: 117 bits (293), Expect = 3.220e-25
Identity = 77/245 (31.43%), Postives = 120/245 (48.98%), Query Frame = 1 
Query:  436 GELAVQFQKAQAAGGVQQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALELAD-GLS----------LPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLKKSYLEDQLKWPPRMIENL 1137
            G+L   F++ QA         A+  Y +  K AP ++Y W+N AN L+A+GDL  A   Y  A+ L +  LS            D +++ LNRG+  L  G+    L DL ++  L  R D  IL N A+A E    +  A  +Y  A+++    V P+W+R S+V FQ+G    +    RR++++F    EV+A    +   +GD  AA R +  I    +  Y  + Y++  + WPP M E L
Sbjct:  102 GDLKKLFREGQALEAQGNILAAQRIYTKATKIAPRFIYAWANLANTLVAQGDLSNADEAYTTAISLCEQNLSEVEPSFGTKRCDDLYLLLLNRGSVRLNNGKPSEGLADLSKSNDLRGRPDSVILENLARAQEINSYYGLADRNYSTAISMTANEVAPFWLRSSMVKFQQGDLTGAFDLARRVENRFPEAPEVRACYACLLLAKGDEDAARRKYLEIPDRPRLKYSDREYVDRVITWPPAMKETL 346
[Close]
BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Match: A0A7S2DWS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWS4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.940e-24
Identity = 53/145 (36.55%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:  715 RALGDLDQAAMLNKRKDLYILANRAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSLAYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWR-GINLGDQQMYLKKSYLEDQLKWPPRMIENLKGF 1146
            + + D + AA++ ++ ++ I   RAQA+ER G W  A  DY  AV +    VQP+W+R++ VLFQ GRD ++++  RR+  +F G  E  AA+  +    GD A A R W     +  +Q+Y +++YLE++++WPPR+I  +  F
Sbjct:   10 QVIDDCNAAAIIRRKPEISIATVRAQAYERLGLWQQAADDYSAAVTMDSKTVQPFWLRYAAVLFQLGRDNEAISLARRVTIRFAGATEPTAALVGMLSASGDAAEASRLWTVEFTIQQRQVYTQRTYLEEKIRWPPRLISAILQF 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14798.3235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQV0_ECTSI3.080e-14257.74TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YLD8_9STRA1.900e-6545.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SDF4_9STRA4.110e-5041.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2V3J951_9FLOR1.550e-4537.76UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
W7TJE8_9STRA3.110e-3939.45Peptidase s41 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
R7QMM9_CHOCR3.780e-3534.84TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
B5Y3F0_PHATC8.690e-2733.05Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4ETF5_CHRCT1.380e-2634.42Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
K0R0W7_THAOC3.220e-2531.43Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2DWS4_9STRA1.940e-2436.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14798contigH-elongata_contig14798:1740..6665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue7.1e-31
Seed eggNOG ortholog130081.XP_005707660.1
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2CYTM@1,2S4PU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTPR domain-containing protein
Ec32 orthologEc-16_000850.1
Exons10
Model size1667
Cds size1173
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14798.3235.1prot_H-elongata_contig14798.3235.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14798 1773..6204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.648487-UTR-H-elongata_contig14798:1739..17721622929876.648487-UTR-H-elongata_contig14798:1739..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 1740..1772 +
1691679191.9196608-UTR-H-elongata_contig14798:1739..17721691679191.9196608-UTR-H-elongata_contig14798:1739..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 1740..1772 +
1622929876.876613-UTR-H-elongata_contig14798:6204..66651622929876.876613-UTR-H-elongata_contig14798:6204..6665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 6205..6665 +
1691679192.0722523-UTR-H-elongata_contig14798:6204..66651691679192.0722523-UTR-H-elongata_contig14798:6204..6665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 6205..6665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.672842-CDS-H-elongata_contig14798:1772..18291622929876.672842-CDS-H-elongata_contig14798:1772..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 1773..1829 +
1691679191.9364119-CDS-H-elongata_contig14798:1772..18291691679191.9364119-CDS-H-elongata_contig14798:1772..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 1773..1829 +
1622929876.6880682-CDS-H-elongata_contig14798:2505..27361622929876.6880682-CDS-H-elongata_contig14798:2505..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 2506..2736 +
1691679191.9469538-CDS-H-elongata_contig14798:2505..27361691679191.9469538-CDS-H-elongata_contig14798:2505..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 2506..2736 +
1622929876.711206-CDS-H-elongata_contig14798:2963..31041622929876.711206-CDS-H-elongata_contig14798:2963..3104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 2964..3104 +
1691679191.9596992-CDS-H-elongata_contig14798:2963..31041691679191.9596992-CDS-H-elongata_contig14798:2963..3104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 2964..3104 +
1622929876.7281392-CDS-H-elongata_contig14798:3269..33261622929876.7281392-CDS-H-elongata_contig14798:3269..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3270..3326 +
1691679191.992129-CDS-H-elongata_contig14798:3269..33261691679191.992129-CDS-H-elongata_contig14798:3269..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3270..3326 +
1622929876.7509968-CDS-H-elongata_contig14798:3523..36841622929876.7509968-CDS-H-elongata_contig14798:3523..3684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3524..3684 +
1691679192.006456-CDS-H-elongata_contig14798:3523..36841691679192.006456-CDS-H-elongata_contig14798:3523..3684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3524..3684 +
1622929876.779672-CDS-H-elongata_contig14798:3948..40451622929876.779672-CDS-H-elongata_contig14798:3948..4045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3949..4045 +
1691679192.0164053-CDS-H-elongata_contig14798:3948..40451691679192.0164053-CDS-H-elongata_contig14798:3948..4045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 3949..4045 +
1622929876.809269-CDS-H-elongata_contig14798:4594..46581622929876.809269-CDS-H-elongata_contig14798:4594..4658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 4595..4658 +
1691679192.0284877-CDS-H-elongata_contig14798:4594..46581691679192.0284877-CDS-H-elongata_contig14798:4594..4658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 4595..4658 +
1622929876.8258908-CDS-H-elongata_contig14798:4969..51061622929876.8258908-CDS-H-elongata_contig14798:4969..5106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 4970..5106 +
1691679192.0368001-CDS-H-elongata_contig14798:4969..51061691679192.0368001-CDS-H-elongata_contig14798:4969..5106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 4970..5106 +
1622929876.8433607-CDS-H-elongata_contig14798:5343..54871622929876.8433607-CDS-H-elongata_contig14798:5343..5487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 5344..5487 +
1691679192.047232-CDS-H-elongata_contig14798:5343..54871691679192.047232-CDS-H-elongata_contig14798:5343..5487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 5344..5487 +
1622929876.8603494-CDS-H-elongata_contig14798:6120..62041622929876.8603494-CDS-H-elongata_contig14798:6120..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 6121..6204 +
1691679192.0606625-CDS-H-elongata_contig14798:6120..62041691679192.0606625-CDS-H-elongata_contig14798:6120..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 6121..6204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14798.3235.1

>prot_H-elongata_contig14798.3235.1 ID=prot_H-elongata_contig14798.3235.1|Name=mRNA_H-elongata_contig14798.3235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp
MRYAAWTLLLSDHLAWSFRPDPFCQVMSLTGFNQRTRRSIVRERTCGTTI
RMLGLGRAPPPPERKGTGRCNAITSATGPILKLKGLLAVFLAATCVLAAE
PGPALSAEFIPTPRTPASVPTTEEGSVVPTTKLEGELAVQFQKAQAAGGV
QQFDQAKNPYNQVIKYAPGYVYGWSNRANVLIAEGDLKGAISDYDKALEL
ADGLSLPDKWVIYLNRGTSFLALGENDRALGDLDQAAMLNKRKDLYILAN
RAQAHERKGDWTAALTDYEGAVNVQPGNVQPWWIRFSLVLFQEGRDFDSL
AYLRRLQSKFEGVGEVQAAVTAVEFGRGDFAAAERAWRGINLGDQQMYLK
KSYLEDQLKWPPRMIENLKGFNQRQKELDARPLEAPKLVT*
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mRNA from alignment at H-elongata_contig14798:1740..6665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14798.3235.1 ID=mRNA_H-elongata_contig14798.3235.1|Name=mRNA_H-elongata_contig14798.3235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4926bp|location=Sequence derived from alignment at H-elongata_contig14798:1740..6665+ (Himanthalia elongata Himel1 dioecious)
AGCAGCTGCTGCGACATTCTGTATCGGAAGGCCATGAGATACGCGGCGTG
GACTCTCCTGTTATCCGATCACCTGGCATGGTCATTTCGGGTAAAAATAT
GAAGCTCATTTCGATAAGTTGCATATTGCAGGACGGTACTGGTAGTTTGA
AACTCATCGACCATCGTGAACTCATGATCCTAATAATTATCGGTTTGAAT
CATGAACAGTCACTCTGCTTTGTGTTGGAAAAAAGAGGCGTACAATAATT
GGTCCATGGGGTTACCTGAATAGGCCGCACCCGTTACTCAAGCTAACTTG
AGGACTGCTGGCCCAGTGTCGGCGGACTCTCCGTGGTAAACGCCATCGGT
ATGCAATTTCATGACCTCATGAAATCGGAGTTAGCCCGATGGCGGTTGAA
GGTAGAGATGGACGCCGTAACGAGAGGATCGAGAGTATCCCAGGAATACG
CACCAGATTCAACCTGGGTTGAGAGAATGAGCAGGCTGACGCGGGCCGAG
ACTACCGAACCCGTCTCGCGAGACAAAATTCTCAGACGCGAACGGGGACA
GGGGGAAAATTGTTTTTGTTTTTGTTTTTTTTCTTCTAATTTTGTTAAGC
TAATTAGAAACAGGATGCAACCAAATCCGGTTGAGCTTTGCTTTTGATGA
CCAACATGTGACGACCACAATAATGTCTCGGGAAGTGGAAGATCGGAGGC
TGTTGCCGATTCAAACCACACCATGTCTATTCTGAGATACTCTCTACCCT
CTCCGCGCCCCGACAGCCTGATCCGTTCTGTCAGGTGATGTCGCTGACTG
GGTTCAATCAGCGGACTCGCCGCAGCATTGTCCGCGAAAGAACTTGCGGT
ACCACCATTCGCATGTTGGGGCTTGGCCGAGCTCCACCACCCCCAGAAAG
GAAAGGGACGGGCAGATGCAACGCCATCACCAGTGCGACGGGACCTATTC
TCAAGCTGAAGGGTCTGTTGGCAGTCTTTTTGGCAGCGACATGCGTTGTG
AGATGTTTTCTTTTATACGGAAGATACCTCGTTCGTTAATACTACTTCTC
ATGCTCGTCTTACCTAGGCTCAAGTAACTCTTGTTCACTAAGCGCGAGTG
CGAGCACATATGACCCGTTGCTGTCTCGCCATGGCCGAAATCCACGATCT
TTTCCCCAAAGAATTCCGGGAGAGGCCGCACGTCACCTTTCATCTGCCTC
TGATCTGCGTCCCACAATTTTCAGCTCGCCGCCGAACCTGGCCCTGCGCT
ATCGGCCGAGTTCATCCCTACTCCAAGAACGCCTGCTTCTGTGCCTACAA
CAGAGGAAGGGAGCGTGGTGCCAACGACGAAGCTCGAGGGAGAGCTAGCG
GTGCAGTTTCAGAAGGTGATGCCGTCAGACACCGGTCGTAAGATCTGAAA
CCGTGACATTTGATGTTGCTAGGGCCGAGAAATCGCTCGTGCCCCAAGCC
GTCTATCCAAGGTCTGTTTGGGGCCCACGTCCATCATAATTCATGATGCG
GTTGCGCGTCCTCTGATTGTGTGCGAGCAGGCCCAAGCGGCGGGGGGCGT
TCAACAGTTCGACCAGGCTAAGAACCCCTACAACCAGGTAACGCTGATTG
ATTTCGAGGACAAGCGCTCCTCGCGTGTCGCGCTTCCACTTTTCACGTTG
TACTGTGTCAACAGAGAGACTGCTCGTGGTTCATTCCCCGCACAGAAAAG
TGAGCGTCTGCTCCATGGTCCTAGTCTTTCGTTACACCTTATCAATCTCG
TGCTTTGGGTGTGGCCGATCCGGTGCTTGATTAGGTCATCAAGTACGCCC
CTGGCTACGTGTACGGCTGGAGCAACAGGGCCAACGTACTGATCGCCGAG
GGGGACCTGAAGGGGGCGATCTCTGACTACGACAAGGCCTTGGAGCTGGC
GGACGGTCTGAGCTTGCCGGACAAGTGGGTCATATACCTCAACAGGTAGG
CTCGGCGAGATGAAGTCGCTTGCATCAAGAAAATATACAAACAAAAAATA
TTGCGTGAGCCCCATCAGGCTAGTATTCGCCCGCCCGCGAGACTCTGGTG
TTGCATTGGTTTCTGCTACTTGCTGAGGCGATGGAGTCTCCCACTGGAGT
GGGCGTGAAACCCACTTCCTCTCCTTAGGCTCTACCGTACGTGCCAGTTT
ACTGTGGCAAGAGAGGGGCGACTGCGACAAACGTTATTAATTTTGTGTTT
GTTGTCTAGGGGAACGAGCTTTCTAGCTCTTGGAGAGAACGACAGAGCCC
TCGGGGACCTGGACCAGGCCGCGATGCTCAACAAAAGAAAAGATCTCTAC
ATCTTGGTGCGCGCCCTCTACTACATTTACCCTGAAATGGGAAACTGACT
GATCGCTCACCCCCCCCCCCCCCCTTCCATAGTAACAACAAACAGTGAGT
TTTGTGTGTGTATGTGTATTTATTAAATATCACATAACCGCGTAATTTGG
CCCTGTCATGCTAGTCATCCTAGGCTTCACGTGGATGTGTGTGTATTTTG
TATAGGATAGCTCGTCGTAGATTTTATTTGGGCAACACTGCTTCACGAAG
TGCTTGACCCGCTTGGTTTCCCCTTACATCAATGAACGATTGATCTCTGC
GTAGGTCAAACCAACCCCTGCAACGTGTCAGTAACGACGGACTACTCTCC
CCTTTTCTGTCGAGTTCACCGACGTTTCGTTTGTAGAGCAGTGCTGTAGT
TTGCGGGTGAAATTCATCCGAAAATAATTTAGCGCGCTTGTGGGTTCCCT
ACGAGGTATCCGGATTAGCACCGGTACGAAAGAGCCCTGCCGATGCTGCC
GTTGATTTCATAGAAGCTCTCTCGTATCATATAACTCATCACGGCCACGG
TTTAGGCAAATCGGGCCCAGGCGCACGAGCGTAAGGGGGATTGGACTGCA
GCCCTCACCGACTACGAGGGTGAGTAAGCTTGCCCCCTCAAGGCTCGTTT
TCAAACTTCGCAGCCTGAGATCTGCTTGTTGCGCGACAAGTCTCGGGCTG
TTACATTTCCGCGCCGAGAGAGAGATTATAGATCGCTGGAACCGAACTGA
CATGTCCAAAGCAAAATGGCGACAAATTTGAAAATGCGTTTTCGCTGCCC
CCTCGGATTGTGCGGTACATGTTTGTCTTCTTACACCCATCTGGAAAACC
CTGGATACTGTTAAACCAATCCGTTCACGCACGCCTAGCCATGTGGTTAT
CCGTGACCTCCTCTTTCGGGTGTGATTCAGGGGCAGTAAACGTGCAGCCA
GGGAATGTGCAGCCGTGGTGGATCCGCTTCTCTCTTGTCCTTTTTCAAGA
AGGACGGGACTTCGACAGCCTAGCTTATCTGCGCCGGCTGCAGTCGAAGT
TCGAGGGTGTTGGGGAGGTGGGCGTAGAGAAAATCCTTACCTGGATCTAG
GACATCCCCCTGCATGAGATGTCCCCTTTCAGACGCTCGCTTGCGTTTCT
ACAGCAAAAGCGTTCCATTCCTTTAATCGGTGTCGCACGAGAGAACGCGC
CAATAGAATACTAGTAAGCCTTTTCCACATACGTGATGGCCAGGGACGGA
AACGATTCATGTGTTGGAGTTATTTCGCCTTGGATGGGGTTCGTCGGTGG
TCAGGTTCAGGCGGCGGTTACAGCGGTGGAGTTCGGGCGAGGTGATTTCG
CAGCAGCGGAGCGAGCGTGGAGAGGGATCAACTTGGGGGACCAGCAGATG
TATCTCAAAAAGTCCTACCTTGAGGATCAGCTCAAGTGGCCACCGAGGGT
GCGCGAGAAGCATACACAAGCGACCCCTCTTGAGCACTTCACATTTCCCT
CCCAATACATGTCTCACCCCTGCTACCGTGCGAACATGTCAAATCGTGGT
GTCCGATGCTGCGTAGCGAGGGCCTAGCATCGGTTTATAATAAGCGTATG
CCCGAGAGTTTATGGTCGGCCGGATATTCGTGAGGTCGAATCCGTTCGCC
GCTTGTCTTGAGCGACAATATATGATAGTATTAGCATAGGGTAGGATCGA
TAATATAGCAACGATGATTTTTTTACGTGAACGTGGATGCCTGATCTGGG
TAACAATACAGCATGTAACACTGTTGACATCACAAGGGGTAACGTTGGAC
AGCTCCGATCGATTCATAGTCCCACACAGGTTTTGGACCGAGGCAGAAGT
TGGGGGGCGTCACAAAACAGCGCGACTCTCAGACCTGACTCAGATTTTCA
TAATATAGTACCCCTAACTGTTTATCCTGTACGCCCGCCCCGTTCGACTT
CTTTCGCGATAAAAAATTAGTGTAGCTTAGATGTCTCCTCAGCCGTAAAT
AACAAAAACGCCGTCCAGACGGGCATTTATTTCCTAGATATCAACCTGAC
TTATGTGCTGTACACTCGATGTCGTGCGCAGATGATCGAAAATCTGAAGG
GGTTCAATCAACGACAAAAGGAGCTGGATGCTCGCCCGTTAGAGGCACCA
AAACTGGTGACATAGTGAGAACGCTCGATCGCGTCAGCGTTCTCGCGTTA
GAGATTGGACCGTGTTTCCGATACGATTCTCACAGCGAGGACAAGGAAGG
GTTGATTCGCTTGCATAGCAAGCTGTTTGGCCTGAGGTGTGTGCTACAGC
AGTTGCTCCAAGCTACAGGTGCGGCTGGATTTGAGGTTATCGATAAATCT
TCGTTGGAGAAAATATGAAAACAATGGCAAAGTGGGGACAACGAAATAGG
AAAACGTATTGTAGTTCCGGCTCCAGCTTACTCGAGTCTTCGCTCTCCTC
AAGAGGGTGTCATCAAGGCAAAGTACGACGCAGGCTCTATTTTTTTCAAC
CGCGACTGCTGCCCTCAGCAACTAGGTATTTGATTGCCACTGAGGAGGCA
CTGGTGTCAGACTAGGGACAATGTACATCCCATACCGTCCATGAGCATGC
AGCGAAGTGAATAATACTCATCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14798:1740..6665+

>mRNA_H-elongata_contig14798.3235.1 ID=mRNA_H-elongata_contig14798.3235.1|Name=mRNA_H-elongata_contig14798.3235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at H-elongata_contig14798:1740..6665+ (Himanthalia elongata Himel1 dioecious)
ATGAGATACGCGGCGTGGACTCTCCTGTTATCCGATCACCTGGCATGGTC
ATTTCGGATGAGATACGCGGCGTGGACTCTCCTGTTATCCGATCACCTGG
CATGGTCATTTCGGCCTGATCCGTTCTGTCAGGTGATGTCGCTGACTGGG
TTCAATCAGCGGACTCGCCGCAGCATTGTCCGCGAAAGAACTTGCGGTAC
CACCATTCGCATGTTGGGGCTTGGCCGAGCTCCACCACCCCCAGAAAGGA
AAGGGACGGGCAGATGCAACGCCATCACCAGTGCGACGGGACCTATTCTC
AAGCTGAAGGGTCTGTTGGCAGTCTTTTTGGCAGCGACATGCGTTCCTGA
TCCGTTCTGTCAGGTGATGTCGCTGACTGGGTTCAATCAGCGGACTCGCC
GCAGCATTGTCCGCGAAAGAACTTGCGGTACCACCATTCGCATGTTGGGG
CTTGGCCGAGCTCCACCACCCCCAGAAAGGAAAGGGACGGGCAGATGCAA
CGCCATCACCAGTGCGACGGGACCTATTCTCAAGCTGAAGGGTCTGTTGG
CAGTCTTTTTGGCAGCGACATGCGTTCTCGCCGCCGAACCTGGCCCTGCG
CTATCGGCCGAGTTCATCCCTACTCCAAGAACGCCTGCTTCTGTGCCTAC
AACAGAGGAAGGGAGCGTGGTGCCAACGACGAAGCTCGAGGGAGAGCTAG
CGGTGCAGTTTCAGAAGCTCGCCGCCGAACCTGGCCCTGCGCTATCGGCC
GAGTTCATCCCTACTCCAAGAACGCCTGCTTCTGTGCCTACAACAGAGGA
AGGGAGCGTGGTGCCAACGACGAAGCTCGAGGGAGAGCTAGCGGTGCAGT
TTCAGAAGGCCCAAGCGGCGGGGGGCGTTCAACAGTTCGACCAGGCTAAG
AACCCCTACAACCAGGCCCAAGCGGCGGGGGGCGTTCAACAGTTCGACCA
GGCTAAGAACCCCTACAACCAGGTCATCAAGTACGCCCCTGGCTACGTGT
ACGGCTGGAGCAACAGGGCCAACGTACTGATCGCCGAGGGGGACCTGAAG
GGGGCGATCTCTGACTACGACAAGGCCTTGGAGCTGGCGGACGGTCTGAG
CTTGCCGGACAAGTGGGTCATATACCTCAACAGGTCATCAAGTACGCCCC
TGGCTACGTGTACGGCTGGAGCAACAGGGCCAACGTACTGATCGCCGAGG
GGGACCTGAAGGGGGCGATCTCTGACTACGACAAGGCCTTGGAGCTGGCG
GACGGTCTGAGCTTGCCGGACAAGTGGGTCATATACCTCAACAGGGGAAC
GAGCTTTCTAGCTCTTGGAGAGAACGACAGAGCCCTCGGGGACCTGGACC
AGGCCGCGATGCTCAACAAAAGAAAAGATCTCTACATCTTGGGGAACGAG
CTTTCTAGCTCTTGGAGAGAACGACAGAGCCCTCGGGGACCTGGACCAGG
CCGCGATGCTCAACAAAAGAAAAGATCTCTACATCTTGGCAAATCGGGCC
CAGGCGCACGAGCGTAAGGGGGATTGGACTGCAGCCCTCACCGACTACGA
GGGCAAATCGGGCCCAGGCGCACGAGCGTAAGGGGGATTGGACTGCAGCC
CTCACCGACTACGAGGGGGCAGTAAACGTGCAGCCAGGGAATGTGCAGCC
GTGGTGGATCCGCTTCTCTCTTGTCCTTTTTCAAGAAGGACGGGACTTCG
ACAGCCTAGCTTATCTGCGCCGGCTGCAGTCGAAGTTCGAGGGTGTTGGG
GAGGGGCAGTAAACGTGCAGCCAGGGAATGTGCAGCCGTGGTGGATCCGC
TTCTCTCTTGTCCTTTTTCAAGAAGGACGGGACTTCGACAGCCTAGCTTA
TCTGCGCCGGCTGCAGTCGAAGTTCGAGGGTGTTGGGGAGGTTCAGGCGG
CGGTTACAGCGGTGGAGTTCGGGCGAGGTGATTTCGCAGCAGCGGAGCGA
GCGTGGAGAGGGATCAACTTGGGGGACCAGCAGATGTATCTCAAAAAGTC
CTACCTTGAGGATCAGCTCAAGTGGCCACCGAGGGTTCAGGCGGCGGTTA
CAGCGGTGGAGTTCGGGCGAGGTGATTTCGCAGCAGCGGAGCGAGCGTGG
AGAGGGATCAACTTGGGGGACCAGCAGATGTATCTCAAAAAGTCCTACCT
TGAGGATCAGCTCAAGTGGCCACCGAGGATGATCGAAAATCTGAAGGGGT
TCAATCAACGACAAAAGGAGCTGGATGCTCGCCCGTTAGAGGCACCAAAA
CTGGTGACATAGATGATCGAAAATCTGAAGGGGTTCAATCAACGACAAAA
GGAGCTGGATGCTCGCCCGTTAGAGGCACCAAAACTGGTGACATAG
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