mRNA_H-elongata_contig14798.3234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14798.3234.1
Unique NamemRNA_H-elongata_contig14798.3234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A6H5K2Q3_9PHAE (GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2Q3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.860e-24
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            QMVMGPAGTGKSTYCKIMQEHCQNA+RT+HVVNLDPAAE F YEVAFDIR
Sbjct:    6 QMVMGPAGTGKSTYCKIMQEHCQNAKRTVHVVNLDPAAETFEYEVAFDIR 55
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A812V9H0_9DINO (GPN-loop GTPase 3 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V9H0_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 1.820e-21
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+VMGPAGTGKSTYCK++QEHCQN  R +HVVNLDPAAE FGYEV+FD+R
Sbjct:    6 QIVMGPAGTGKSTYCKLIQEHCQNLGRAVHVVNLDPAAEEFGYEVSFDVR 55
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A843T944_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843T944_COLES)

HSP 1 Score: 79.3 bits (194), Expect = 6.750e-18
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  + +HC+  RRT+H+VNLDPAAE+F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLYQHCETMRRTIHIVNLDPAAESFDYPVAMDIR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A0B2W503_TOXCA (GPN-loop GTPase 3 n=3 Tax=Ascaridoidea TaxID=33256 RepID=A0A0B2W503_TOXCA)

HSP 1 Score: 83.2 bits (204), Expect = 7.090e-18
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC I+Q+HCQN +R +HVVNLDPAAEAF YE   D+R
Sbjct:    5 QLVIGPAGSGKSTYCSIIQQHCQNVQRLVHVVNLDPAAEAFKYEATVDVR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A835YPS9_9STRA (GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.220e-18
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            QMVMGPAG GKSTYCK +Q++   +RRT+HVVNLDPAAEAF Y+VAFD+R
Sbjct:    5 QMVMGPAGVGKSTYCKAIQDYAATSRRTIHVVNLDPAAEAFEYDVAFDVR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: M1BT52_SOLTU (XPA-binding protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BT52_SOLTU)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-17
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  + +HC+  RRT+H+VNLDPAAE F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLYQHCETTRRTIHIVNLDPAAENFDYPVAMDIR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A199VI62_ANACO (GPN-loop GTPase 3 (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VI62_ANACO)

HSP 1 Score: 79.0 bits (193), Expect = 1.910e-17
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  + +HC+  RRT+HVVNLDPAAE F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLYQHCETTRRTIHVVNLDPAAENFDYPVAMDIR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: A0A3N6QRS5_BRACR (Uncharacterized protein n=2 Tax=Brassica TaxID=3705 RepID=A0A3N6QRS5_BRACR)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-17
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  + +HC+  RRTMH+VNLDPAAE F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLNQHCETIRRTMHIVNLDPAAEVFNYPVAMDIR 54
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BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: C0Z2T5_ARATH (AT4G12790 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=C0Z2T5_ARATH)

HSP 1 Score: 79.3 bits (194), Expect = 3.220e-17
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  + EHC+   RTMHVVNLDPAAE F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIR 54
[Close]
BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Match: V4T8N8_CITCL (Uncharacterized protein n=2 Tax=Citrus TaxID=2706 RepID=V4T8N8_CITCL)

HSP 1 Score: 79.3 bits (194), Expect = 3.520e-17
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QMVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIR 150
            Q+V+GPAG+GKSTYC  +  HC+  RRTMH+VNLDPAAE F Y VA DIR
Sbjct:    5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIR 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14798.3234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2Q3_9PHAE3.860e-2492.00GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A812V9H0_9DINO1.820e-2180.00GPN-loop GTPase 3 n=1 Tax=Symbiodinium sp. KB8 Tax... [more]
A0A843T944_COLES6.750e-1866.00Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A0B2W503_TOXCA7.090e-1870.00GPN-loop GTPase 3 n=3 Tax=Ascaridoidea TaxID=33256... [more]
A0A835YPS9_9STRA7.220e-1874.00GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=30... [more]
M1BT52_SOLTU1.070e-1766.00XPA-binding protein n=1 Tax=Solanum tuberosum TaxI... [more]
A0A199VI62_ANACO1.910e-1768.00GPN-loop GTPase 3 (Fragment) n=1 Tax=Ananas comosu... [more]
A0A3N6QRS5_BRACR2.530e-1768.00Uncharacterized protein n=2 Tax=Brassica TaxID=370... [more]
C0Z2T5_ARATH3.220e-1770.00AT4G12790 protein n=1 Tax=Arabidopsis thaliana Tax... [more]
V4T8N8_CITCL3.520e-1768.00Uncharacterized protein n=2 Tax=Citrus TaxID=2706 ... [more]

Pages

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14798contigH-elongata_contig14798:274..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7FQU7
Preferred nameGPN3
KEGG koko:K06883,ko:K12486
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0000070,GO:0000122,GO:0000212,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000779,GO:0000780,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0002064,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0003924,GO:0004497,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010571,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015031,GO:0015616,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016491,GO:0016604,GO:0016605,GO:0016705,GO:0016709,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019219,GO:0019222,GO:0019748,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030330,GO:0030855,GO:0030900,GO:0031056,GO:0031060,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031497,GO:0031618,GO:0031933,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033218,GO:0033262,GO:0033365,GO:0033554,GO:0034091,GO:0034092,GO:0034182,GO:0034183,GO:0034502,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035064,GO:0035107,GO:0035108,GO:0035120,GO:0035127,GO:0035128,GO:0035136,GO:0035264,GO:0035295,GO:0035556,GO:0035690,GO:0040007,GO:0042221,GO:0042277,GO:0042393,GO:0042493,GO:0042623,GO:0042770,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044550,GO:0044703,GO:0045005,GO:0045137,GO:0045184,GO:0045740,GO:0045786,GO:0045787,GO:0045839,GO:0045875,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051321,GO:0051570,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055114,GO:0060008,GO:0060009,GO:0060173,GO:0060255,GO:0060322,GO:0060429,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070087,GO:0070192,GO:0070198,GO:0070727,GO:0070887,GO:0071103,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072331,GO:0072520,GO:0072594,GO:0072710,GO:0072711,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097327,GO:0097329,GO:0098687,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:0140097,GO:1900112,GO:1901360,GO:1901576,GO:1901580,GO:1901581,GO:1901582,GO:1901698,GO:1901699,GO:1902275,GO:1902679,GO:1902680,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1904907,GO:1904908,GO:1990421,GO:1990707,GO:2000105,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.GTP binding
EggNOG OGsKOG1534@1,KOG1534@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.579645-CDS-H-elongata_contig14798:273..4381622929876.579645-CDS-H-elongata_contig14798:273..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 274..438 -
1691679191.8970196-CDS-H-elongata_contig14798:273..4381691679191.8970196-CDS-H-elongata_contig14798:273..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14798 274..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.5943446-UTR-H-elongata_contig14798:438..4411622929876.5943446-UTR-H-elongata_contig14798:438..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 439..441 -
1691679191.9075809-UTR-H-elongata_contig14798:438..4411691679191.9075809-UTR-H-elongata_contig14798:438..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14798 439..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14798.3234.1prot_H-elongata_contig14798.3234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14798 274..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14798.3234.1

>prot_H-elongata_contig14798.3234.1 ID=prot_H-elongata_contig14798.3234.1|Name=mRNA_H-elongata_contig14798.3234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MVMGPAGTGKSTYCKIMQEHCQNARRTMHVVNLDPAAEAFGYEVAFDIRG
ERCC*
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mRNA from alignment at H-elongata_contig14798:274..441-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14798.3234.1 ID=mRNA_H-elongata_contig14798.3234.1|Name=mRNA_H-elongata_contig14798.3234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig14798:274..441- (Himanthalia elongata Himel1 dioecious)
CAGATGGTGATGGGACCTGCGGGCACGGGCAAGTCGACCTACTGCAAGAT
CATGCAGGAGCACTGTCAGAACGCTAGACGCACCATGCACGTCGTCAACC
TCGACCCGGCAGCAGAGGCCTTTGGGTACGAGGTAGCCTTCGATATTCGA
GGTGAGCGCTGCTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14798:274..441-

>mRNA_H-elongata_contig14798.3234.1 ID=mRNA_H-elongata_contig14798.3234.1|Name=mRNA_H-elongata_contig14798.3234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig14798:274..441- (Himanthalia elongata Himel1 dioecious)
ATGGTGATGGGACCTGCGGGCACGGGCAAGTCGACCTACTGCAAGATCAT
GCAGGAGCACTGTCAGAACGCTAGACGCACCATGCACGTCGTCAACCTCG
ACCCGGCAGCAGAGGCCTTTGGGTACGAGGTAGCCTTCGATATTCGAGGT
GAGCGCTGCTGCTGAATGGTGATGGGACCTGCGGGCACGGGCAAGTCGAC
CTACTGCAAGATCATGCAGGAGCACTGTCAGAACGCTAGACGCACCATGC
ACGTCGTCAACCTCGACCCGGCAGCAGAGGCCTTTGGGTACGAGGTAGCC
TTCGATATTCGAGGTGAGCGCTGCTGCTGA
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