mRNA_H-elongata_contig147929.3232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147929.3232.1
Unique NamemRNA_H-elongata_contig147929.3232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A6H5K487_9PHAE (SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K487_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.170e-31
Identity = 52/61 (85.25%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKE+L H+RS+FQDV+VF+S+HYGKVLVLDGVIQLTERDECSYQEM+THIPCFA GDPKKV
Sbjct:   24 VKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKV 84
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A835ZDK7_9STRA (Spermidine/spermine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.100e-23
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            V+++L H++S+FQDV+VF S  YGKVLVLDGVIQ+TERDE +YQEM+THIPCFAH  PK+V
Sbjct:   24 VEKVLFHEKSDFQDVLVFQSATYGKVLVLDGVIQVTERDEFAYQEMLTHIPCFAHPHPKRV 84
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A1I7XBE5_HETBA (PABS domain-containing protein n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XBE5_HETBA)

HSP 1 Score: 93.2 bits (230), Expect = 3.120e-23
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKK 180
            VKEIL H++S+FQDV+VF S  YG VLVLDGVIQ TERDE SYQEM+ H+P FAH +PKK
Sbjct:   51 VKEILFHEKSKFQDVLVFKSETYGNVLVLDGVIQATERDEFSYQEMLAHLPMFAHPNPKK 110
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A0B1SQ00_OESDE (Putative spermidine synthase (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1SQ00_OESDE)

HSP 1 Score: 94.4 bits (233), Expect = 6.360e-23
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKEIL H++S++QDV+VF S  YG VLVLDG+IQ+TERDE SYQEM+ H+P FAH +PKKV
Sbjct:   51 VKEILFHEKSDYQDVLVFKSETYGNVLVLDGIIQVTERDEFSYQEMLAHLPMFAHPNPKKV 111
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A7S2M088_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2M088_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 6.460e-23
Identity = 43/61 (70.49%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKE+LLHK+++FQD+MVF+S  +GKVL+LDGVIQLTERDE SYQEM+TH+P FAH +P+ V
Sbjct:   55 VKEVLLHKKTKFQDLMVFDSTQWGKVLILDGVIQLTERDEMSYQEMLTHLPMFAHPNPQHV 115
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: UPI000B8C86E6 (spermidine synthase-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C86E6)

HSP 1 Score: 92.8 bits (229), Expect = 7.860e-23
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            V++IL   RSE+QDVMVF S  YGKVLVLDGVIQLTERDECSYQEMITH+P  +  +PKKV
Sbjct:   69 VEKILFQGRSEYQDVMVFQSSTYGKVLVLDGVIQLTERDECSYQEMITHLPLCSIPNPKKV 129
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BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A0D8Y704_DICVI (Putative spermidine synthase n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8Y704_DICVI)

HSP 1 Score: 92.8 bits (229), Expect = 1.630e-22
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKEIL H++S++QD++VF S  YG VLVLDG+IQ TERDE SYQEM+ H+P FAH +PKKV
Sbjct:   21 VKEILYHEKSDYQDILVFKSETYGNVLVLDGIIQATERDEFSYQEMLAHLPMFAHPNPKKV 81
[Close]
BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: UPI000711C821 (spermidine synthase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C821)

HSP 1 Score: 94.7 bits (234), Expect = 1.710e-22
Identity = 41/61 (67.21%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKE+L H++SE+QD++VF+S  YG+VLVLDGVIQ+TE+DE +YQEMITH+P FAH +PK V
Sbjct:   18 VKEVLYHEKSEYQDILVFDSESYGRVLVLDGVIQVTEKDEFAYQEMITHLPLFAHRNPKSV 78
[Close]
BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A196SJ54_BLAHN (Spermine/spermidine synthase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJ54_BLAHN)

HSP 1 Score: 94.7 bits (234), Expect = 4.070e-22
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VKE+L H++SEFQD+++F+S  YG+V+VLDGVIQ+TERDE +YQEMITH+P FAH  PK V
Sbjct:   24 VKEVLYHEKSEFQDILLFDSESYGRVMVLDGVIQVTERDEFAYQEMITHLPLFAHRSPKNV 84
[Close]
BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Match: A0A7R9W7J2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7J2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.790e-22
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHIPCFAHGDPKKV 183
            VK+++ H RS+FQDV+VF S ++G VLVLDGVIQ+TERDE +YQEMI HIP FAH DPK+V
Sbjct:   43 VKKVIDHHRSKFQDVLVFESANHGNVLVLDGVIQVTERDEFAYQEMIAHIPLFAHPDPKRV 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147929.3232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K487_9PHAE6.170e-3185.25SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835ZDK7_9STRA2.100e-2370.49Spermidine/spermine synthase n=1 Tax=Tribonema min... [more]
A0A1I7XBE5_HETBA3.120e-2371.67PABS domain-containing protein n=1 Tax=Heterorhabd... [more]
A0A0B1SQ00_OESDE6.360e-2368.85Putative spermidine synthase (Fragment) n=1 Tax=Oe... [more]
A0A7S2M088_9DINO6.460e-2370.49Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
UPI000B8C86E67.860e-2373.77spermidine synthase-like n=1 Tax=Carica papaya Tax... [more]
A0A0D8Y704_DICVI1.630e-2267.21Putative spermidine synthase n=1 Tax=Dictyocaulus ... [more]
UPI000711C8211.710e-2267.21spermidine synthase n=1 Tax=Blastocystis sp. subty... [more]
A0A196SJ54_BLAHN4.070e-2267.21Spermine/spermidine synthase n=1 Tax=Blastocystis ... [more]
A0A7R9W7J2_9STRA4.790e-2268.85Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147929contigH-elongata_contig147929:325..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.5e-24
Seed eggNOG ortholog2880.D7FKW3
Preferred nameSRM
KEGG rclassRC00003,RC00021,RC00053,RC00060,RC00215,RC00225
KEGG koko:K00293,ko:K00797,ko:K00802,ko:K05353
KEGG ReactionR01153,R01920,R02315,R02869,R08359
KEGG Pathwayko00270,ko00300,ko00310,ko00330,ko00410,ko00480,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00310,map00330,map00410,map00480,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00030,M00032,M00034,M00133
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009653,GO:0009987,GO:0010033,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016768,GO:0017144,GO:0019752,GO:0030587,GO:0031150,GO:0031154,GO:0031288,GO:0032502,GO:0032787,GO:0034097,GO:0034641,GO:0036360,GO:0042221,GO:0042364,GO:0042398,GO:0042401,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046983,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051703,GO:0051704,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0072330,GO:0090702,GO:0097164,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
EC1.5.1.10,2.1.1.53,2.5.1.16,2.5.1.22
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.4511955-CDS-H-elongata_contig147929:324..5071622929876.4511955-CDS-H-elongata_contig147929:324..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147929 325..507 +
1691679191.8650744-CDS-H-elongata_contig147929:324..5071691679191.8650744-CDS-H-elongata_contig147929:324..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147929 325..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147929.3232.1prot_H-elongata_contig147929.3232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147929 325..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147929.3232.1

>prot_H-elongata_contig147929.3232.1 ID=prot_H-elongata_contig147929.3232.1|Name=mRNA_H-elongata_contig147929.3232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
VKEILLHKRSEFQDVMVFNSMHYGKVLVLDGVIQLTERDECSYQEMITHI
PCFAHGDPKKV
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mRNA from alignment at H-elongata_contig147929:325..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147929.3232.1 ID=mRNA_H-elongata_contig147929.3232.1|Name=mRNA_H-elongata_contig147929.3232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig147929:325..507+ (Himanthalia elongata Himel1 dioecious)
GTGAAGGAAATCCTGCTCCACAAGCGGTCTGAATTTCAAGATGTCATGGT
CTTCAATTCAATGCACTACGGGAAGGTGCTCGTCCTGGATGGGGTGATCC
AGCTTACCGAACGGGACGAATGTTCCTACCAAGAAATGATTACTCACATC
CCGTGTTTCGCACATGGCGACCCCAAGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig147929:325..507+

>mRNA_H-elongata_contig147929.3232.1 ID=mRNA_H-elongata_contig147929.3232.1|Name=mRNA_H-elongata_contig147929.3232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig147929:325..507+ (Himanthalia elongata Himel1 dioecious)
GTGAAGGAAATCCTGCTCCACAAGCGGTCTGAATTTCAAGATGTCATGGT
CTTCAATTCAATGCACTACGGGAAGGTGCTCGTCCTGGATGGGGTGATCC
AGCTTACCGAACGGGACGAATGTTCCTACCAAGAAATGATTACTCACATC
CCGTGTTTCGCACATGGCGACCCCAAGAAGGTGGTGAAGGAAATCCTGCT
CCACAAGCGGTCTGAATTTCAAGATGTCATGGTCTTCAATTCAATGCACT
ACGGGAAGGTGCTCGTCCTGGATGGGGTGATCCAGCTTACCGAACGGGAC
GAATGTTCCTACCAAGAAATGATTACTCACATCCCGTGTTTCGCACATGG
CGACCCCAAGAAGGTG
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