mRNA_H-elongata_contig147910.3231.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147910.3231.1
Unique NamemRNA_H-elongata_contig147910.3231.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: D7G073_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G073_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.680e-35
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNECVDVKEG +DT+IETNYCTGQLDE+S GIDSRA+ T IRYNKVVG KGAGVRLGGHKVGR+QYG+NC+
Sbjct:  267 GNECVDVKEGAVDTVIETNYCTGQLDEESAGIDSRASSTTIRYNKVVGCKGAGVRLGGHKVGREQYGVNCK 337          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5JK02_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK02_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 6.780e-35
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNECVDVKEG +DT+IETNYCTGQLDEDS GIDSRA+ T IRYNKVVG KGAGVRLGGHKVGR+QYGINC+
Sbjct:  580 GNECVDVKEGAVDTVIETNYCTGQLDEDSAGIDSRASSTTIRYNKVVGCKGAGVRLGGHKVGREQYGINCK 650          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A1F7I8U6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_12 TaxID=1802056 RepID=A0A1F7I8U6_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-17
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGIN 207
            GNECVD+KEG+   I+E N CTGQ D++SGG+DSR N  I R+N+V G+ GAGVRLGG +   +  GIN
Sbjct:  189 GNECVDIKEGSWGNIVEYNNCTGQKDKESGGMDSRGNRNIFRFNEVYGNSGAGVRLGGDE---NSDGIN 254          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5K4I7_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.560e-17
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNE ++VKEG++DT+IE N    Q DE+SGGI SR + +IIRYN +  + GAGVRLGGH V   +YG N Q
Sbjct:   15 GNEGIEVKEGSVDTLIEYNEVHMQYDEESGGIGSRGDRSIIRYNHIQDTDGAGVRLGGHIVDGIEYGANNQ 85          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC)

HSP 1 Score: 84.3 bits (207), Expect = 2.100e-17
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 NECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGIN 207
            NECVDVKEG+ D ++E N C+ QLD +S G DSR +D   RYN+V    GAG+R+GGHK+    YG N
Sbjct:  250 NECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGEN 317          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: UPI00036CBE5E (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036CBE5E)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-17
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGI 204
            GNECVD+KEG  + ++E N C GQ D DSGG D+R +  IIRYN    +KGAGVR+GG+ V   QYG+
Sbjct:  248 GNECVDIKEGAENNLVENNICAGQQDPDSGGFDARGDYNIIRYNISYENKGAGVRIGGNLVKGKQYGV 315          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.500e-17
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNE +DVKEGT+DT+IE N    Q D+DSGGI SR + +IIRYN +  + GAGVRLGGH V   +YG N Q
Sbjct:  244 GNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQ 314          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.280e-17
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNE +DVKEGT+DT+IE N    Q D+DSGGI SR + +IIRYN +  + GAGVRLGGH V   +YG N Q
Sbjct:   67 GNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNYIEDTDGAGVRLGGHTVDGIEYGKNNQ 137          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.350e-17
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNE +DVKEG++DT+IE N    Q D+DSGGI SR + +IIRYN +  + GAGVRLGGH V   +YG N Q
Sbjct:  249 GNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDSTEYGKNNQ 319          
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.870e-16
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
            GNE +DVKEG++DT+IE N    Q D+DSGGI SR + +IIRYN +  + GAGVRLGGH V   +YG N Q
Sbjct:  250 GNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQ 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G073_ECTSI5.680e-3583.10Putative nosD copper-binding protein n=1 Tax=Ectoc... [more]
A0A6H5JK02_9PHAE6.780e-3585.92Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A1F7I8U6_9BACT1.390e-1757.97Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A6H5K4I7_9PHAE1.560e-1756.34Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
Q6XM06_9PHYC2.100e-1754.41FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a... [more]
UPI00036CBE5E2.400e-1755.88right-handed parallel beta-helix repeat-containing... [more]
A0A6H5L3G3_9PHAE4.500e-1759.15Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D7FIS5_ECTSI7.280e-1759.15FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JYT7_9PHAE7.350e-1757.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8H5_9PHAE1.870e-1657.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147910contigH-elongata_contig147910:287..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.8
Seed ortholog evalue7.1e-14
Seed eggNOG ortholog1121935.AQXX01000119_gene4818
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative nosD copper-binding protein
Ec32 orthologEc-05_004070.1
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.3834357-CDS-H-elongata_contig147910:286..4081622929876.3834357-CDS-H-elongata_contig147910:286..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147910 287..408 -
1691679191.8432455-CDS-H-elongata_contig147910:286..4081691679191.8432455-CDS-H-elongata_contig147910:286..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147910 287..408 -
1622929876.397913-CDS-H-elongata_contig147910:1029..11201622929876.397913-CDS-H-elongata_contig147910:1029..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147910 1030..1120 -
1691679191.8529236-CDS-H-elongata_contig147910:1029..11201691679191.8529236-CDS-H-elongata_contig147910:1029..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147910 1030..1120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147910.3231.1prot_H-elongata_contig147910.3231.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147910 287..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147910.3231.1

>prot_H-elongata_contig147910.3231.1 ID=prot_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSK
GAGVRLGGHKVGRDQYGINCQ
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mRNA from alignment at H-elongata_contig147910:287..1120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147910.3231.1 ID=mRNA_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig147910:287..1120- (Himanthalia elongata Himel1 dioecious)
GGTAACGAATGCGTGGACGTTAAGGAAGGCACGATGGACACCATTATCGA GACTAACTACTGTACCGGCCAGCTCGACGAGGATTCGGGGGGTAAGTTGA TGAAGAAGCGTACTGTACAACTAAAGAAATCCACCCGCACCGCGACACTC TACTCAGGAACGAACTACAACATTTTGTCGCCTGAAGTGCCTCAATGACT GTAGTCTAGAATGAGATGTGAAGGTGTTGACAAAACTGTCTAATGTGCTC ATATTCCACAAAGATCCCACTCTTAACTCTAGAGCAGACTAAATGGACGT TGAACGACATAATGAGAGACGTGCCCGATATAAGACGATACATCAAATCC TTCAATATCTATGCCGACTAATTCTTAGCAAATTTGGTATACCCTACCCA CAACATGCACACGCTCTCCTCAGAAAAACAGAAAAACATGCCTCACCCCT GTCCCCCCAAAACCTCCGAACTCTGCCCAGGCGGCGCGCCGGTCAGATGT CTTTCTTGATCTGTCGTTGTCAACTTCTGCAACGTCTATCCTTTCGCACG ATTTGAAGTGCACATACATGTTTTTGTGTATGTGAATATTTATCACATGA CACGTACACAAAAAAAAATCACTAAAAGTTTAGCTGTACTATATACCTTC AAAGCGGCGATCTAAGAATGCCTCCCATCTCTCTACTCTACATGCTTCGC TTTATTTTGTAGGGATCGACAGCCGCGCCAACGACACTATCATCAGGTAC AACAAGGTGGTGGGCAGTAAGGGCGCGGGTGTCCGCCTCGGAGGCCATAA AGTCGGCCGTGACCAGTACGGCATCAACTGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig147910:287..1120-

>mRNA_H-elongata_contig147910.3231.1 ID=mRNA_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig147910:287..1120- (Himanthalia elongata Himel1 dioecious)
GGTAACGAATGCGTGGACGTTAAGGAAGGCACGATGGACACCATTATCGA
GACTAACTACTGTACCGGCCAGCTCGACGAGGATTCGGGGGGGTAACGAA
TGCGTGGACGTTAAGGAAGGCACGATGGACACCATTATCGAGACTAACTA
CTGTACCGGCCAGCTCGACGAGGATTCGGGGGGGATCGACAGCCGCGCCA
ACGACACTATCATCAGGTACAACAAGGTGGTGGGCAGTAAGGGCGCGGGT
GTCCGCCTCGGAGGCCATAAAGTCGGCCGTGACCAGTACGGCATCAACTG
CCAGGGATCGACAGCCGCGCCAACGACACTATCATCAGGTACAACAAGGT
GGTGGGCAGTAAGGGCGCGGGTGTCCGCCTCGGAGGCCATAAAGTCGGCC
GTGACCAGTACGGCATCAACTGCCAG
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