prot_H-elongata_contig147854.3230.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig147854.3230.1
Unique Name	prot_H-elongata_contig147854.3230.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	107

Homology

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BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.180e-40
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = 0

Query:    1 MGAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVTILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDVAVRGE 105
            +GAICA+LPRWLMQWG FP G GFF +VFLVLRSRRLTSLGKKFGCVGVT+LVL  +SD+GLT  W  +   FVR +IEGGV ALVA L PYPR  TR+ A+R +
Sbjct:   91 VGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVHIEGGVTALVASLLPYPRLATREGALRAQ 195

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BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.230e-11
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 0

Query:    2 GAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVTILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDVAVRGE 105
            GA  A L R +     +  G+  F+  FL++R RRL SLG+K  CV + + VL     E +TA W ++ + + ++  EGGV+A +A++ PYPR   R+ A+R +
Sbjct:   79 GAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLGRKIACVTLIVAVLT-FEREDVTA-WIMSMLSWYKSVFEGGVWATLALMVPYPRLALREGALRAQ 180

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot

BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LD61_ECTSI	1.180e-40	69.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CQ15_9STRA	1.230e-11	36.54	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 10..32

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig147854	contig	H-elongata_contig147854:165..1095 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig147854.3230.1	mRNA_H-elongata_contig147854.3230.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig147854 147..1095 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig147854.3230.1 ID=prot_H-elongata_contig147854.3230.1|Name=mRNA_H-elongata_contig147854.3230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MGAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVT
ILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDV
AVRGEVI