mRNA_H-elongata_contig147854.3230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147854.3230.1
Unique NamemRNA_H-elongata_contig147854.3230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.640e-43
Identity = 77/111 (69.37%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    1 ITQGALMGAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVTILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDVAVRGE 333
            +T GAL+GAICA+LPRWLMQWG FP G GFF +VFLVLRSRRLTSLGKKFGCVGVT+LVL  +SD+GLT  W  +   FVR +IEGGV ALVA L PYPR  TR+ A+R +
Sbjct:   85 MTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVHIEGGVTALVASLLPYPRLATREGALRAQ 195
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BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.450e-13
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    7 QGALMGAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVTILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDVAVRGE 333
             GAL GA  A L R +     +  G+  F+  FL++R RRL SLG+K  CV + + VL     E +TA W ++ + + ++  EGGV+A +A++ PYPR   R+ A+R +
Sbjct:   74 HGALSGAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLGRKIACVTLIVAVLT-FEREDVTA-WIMSMLSWYKSVFEGGVWATLALMVPYPRLALREGALRAQ 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147854.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD61_ECTSI1.640e-4369.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CQ15_9STRA1.450e-1337.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147854contigH-elongata_contig147854:147..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000600.1
Hectar predicted targeting categorysignal anchor
Exons2
Model size339
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147854.3230.1prot_H-elongata_contig147854.3230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147854 165..1095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.2954593-UTR-H-elongata_contig147854:146..1641622929876.2954593-UTR-H-elongata_contig147854:146..164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147854 147..164 +
1691679191.8050654-UTR-H-elongata_contig147854:146..1641691679191.8050654-UTR-H-elongata_contig147854:146..164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147854 147..164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.315681-CDS-H-elongata_contig147854:164..2621622929876.315681-CDS-H-elongata_contig147854:164..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147854 165..262 +
1691679191.8210495-CDS-H-elongata_contig147854:164..2621691679191.8210495-CDS-H-elongata_contig147854:164..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147854 165..262 +
1622929876.33084-CDS-H-elongata_contig147854:872..10951622929876.33084-CDS-H-elongata_contig147854:872..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147854 873..1095 +
1691679191.8324351-CDS-H-elongata_contig147854:872..10951691679191.8324351-CDS-H-elongata_contig147854:872..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147854 873..1095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147854.3230.1

>prot_H-elongata_contig147854.3230.1 ID=prot_H-elongata_contig147854.3230.1|Name=mRNA_H-elongata_contig147854.3230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MGAICAVLPRWLMQWGLFPVGIGFFVSVFLVLRSRRLTSLGKKFGCVGVT
ILVLADLSDEGLTADWALTAVDFVRTNIEGGVFALVAVLFPYPRYTTRDV
AVRGEVI
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mRNA from alignment at H-elongata_contig147854:147..1095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147854.3230.1 ID=mRNA_H-elongata_contig147854.3230.1|Name=mRNA_H-elongata_contig147854.3230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=949bp|location=Sequence derived from alignment at H-elongata_contig147854:147..1095+ (Himanthalia elongata Himel1 dioecious)
ATAACGCAAGGCGCCCTAATGGGTGCAATCTGCGCCGTGCTGCCTCGCTG
GCTGATGCAGTGGGGACTGTTTCCGGTGGGGATCGGCTTCTTCGTATCGG
TTTTCCTTGTGCTGAGGTATGTGGAGGGGGTCTTCTAAAGATTAGTGAGG
GGTTTCGAGGCTGCTTCCTCTGCCGTAGCGCTCGGTTCGTTATACCTTGC
GGATGGCCCCCGAAATATATAGTATGCTCTAAGTCTACCGAAGATGACCG
GAATCATGCAGAGTATGCTCTATGTACCAGGTGATAGGGGATGGGTTTCC
CCGACCCGCTCGATTGTCTCCGCAGCCACTTTTACAGCAGCAGTAGATAC
AGCGGATTTGGATAGGTCTTGTGAGCTATCCCAAATATTAGCCTGCGGCG
TCGTTGTGCTGCATATCTGTCTTGCCGTGAAAGTGAGGAGAAGGCATTCC
CGGAGTGTGTTACGTTACTCGTATACTAAATGTACTATACTCTTGTCACC
TACGCGGCAGATAAATAATAATACTATTATAGTCATCAGAACCCGGAAAC
CACTCATTGATCGCTTCCGAAAGGCCTCGAGGGTCTTTGGATGGGAGAGC
TATTGGCCACATTCTCCCATCTACCCCCTCTCAGTCACCCACCCTCGCTG
TTATTTTTGATGTTGTTATTGTTGTGTCAAAACAAATTTCGTTTGCACAA
TGGTCAACCGTCAACCGATCGCACAGGAGCAGGAGGCTGACGTCGCTTGG
AAAAAAGTTCGGCTGCGTCGGTGTGACGATCCTCGTTCTGGCCGACCTCT
CGGACGAGGGGCTGACGGCTGACTGGGCTCTCACCGCGGTGGACTTCGTT
CGGACCAATATTGAAGGGGGCGTGTTTGCTCTGGTGGCCGTCTTGTTCCC
GTACCCCCGGTACACCACACGAGACGTAGCAGTGCGGGGCGAGGTAATA
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Coding sequence (CDS) from alignment at H-elongata_contig147854:147..1095+

>mRNA_H-elongata_contig147854.3230.1 ID=mRNA_H-elongata_contig147854.3230.1|Name=mRNA_H-elongata_contig147854.3230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig147854:147..1095+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGCAATCTGCGCCGTGCTGCCTCGCTGGCTGATGCAGTGGGGACT
GTTTCCGGTGGGGATCGGCTTCTTCGTATCGGTTTTCCTTGTGCTGAGAT
GGGTGCAATCTGCGCCGTGCTGCCTCGCTGGCTGATGCAGTGGGGACTGT
TTCCGGTGGGGATCGGCTTCTTCGTATCGGTTTTCCTTGTGCTGAGGAGC
AGGAGGCTGACGTCGCTTGGAAAAAAGTTCGGCTGCGTCGGTGTGACGAT
CCTCGTTCTGGCCGACCTCTCGGACGAGGGGCTGACGGCTGACTGGGCTC
TCACCGCGGTGGACTTCGTTCGGACCAATATTGAAGGGGGCGTGTTTGCT
CTGGTGGCCGTCTTGTTCCCGTACCCCCGGTACACCACACGAGACGTAGC
AGTGCGGGGCGAGGTAATAGAGCAGGAGGCTGACGTCGCTTGGAAAAAAG
TTCGGCTGCGTCGGTGTGACGATCCTCGTTCTGGCCGACCTCTCGGACGA
GGGGCTGACGGCTGACTGGGCTCTCACCGCGGTGGACTTCGTTCGGACCA
ATATTGAAGGGGGCGTGTTTGCTCTGGTGGCCGTCTTGTTCCCGTACCCC
CGGTACACCACACGAGACGTAGCAGTGCGGGGCGAGGTAATA
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