mRNA_H-elongata_contig147789.3226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147789.3226.1
Unique NamemRNA_H-elongata_contig147789.3226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A6H5LM87_9PHAE (CYTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM87_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-13
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 KNMLEAAGFKLFASFRTDRTKYRLDGYTIDIDQAS-----FGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFVFVLCSAACQQLAIIS 303
            K +LEAAGF+ FAS RT+R KYRL  + +DID+AS     FG++V+E+E +S KE+ ++ SA D I  LAR LG + E    +PVK G  V  +     +QL +++
Sbjct:  401 KRVLEAAGFEAFASLRTNRLKYRLGVFAVDIDRASGRQVEFGHEVVEIERIS-KES-DVLSARDSITALARSLGARREGESGRPVK-GKLVEYIIRNCPRQLEVLA 503          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: UPI000A2A9617 (thiamine-triphosphatase-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9617)

HSP 1 Score: 62.4 bits (150), Expect = 1.840e-9
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   10 LEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVK 243
            +E    ++FASF+T RTKY+LD  TID+D ASFGY V E+E + G E  E+  A   +  +A+ LGI  +E  R  V+
Sbjct:  141 VEKFDLQVFASFKTKRTKYQLDDVTIDLDIASFGYSVGEIEIVVGDEE-EVPQAKAKLETVAKKLGINWDESYRGKVE 217          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A2B4ST67_STYPI (Thiamine-triphosphatase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4ST67_STYPI)

HSP 1 Score: 61.6 bits (148), Expect = 2.970e-9
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 KNMLEAAGFKLFASFRTDRTKYRL-DGYTIDIDQASFGYQVIEVETM-SGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFVFVLCSAACQQL 291
            ++M++ + FK  A F T+RT Y++ DG  +D+DQASFGYQV E+E + S +++ E+A   + I K A +LGI+       P K+  +VF  C +  +QL
Sbjct:  120 EDMVQGSSFKQIACFTTNRTVYKMPDGVVVDLDQASFGYQVGELEVLVSSEKSVEVAK--ELIQKTAELLGIECRLNI--PSKLEEYVFNNCRSHHEQL 214          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A6P8I9Z9_ACTTE (thiamine-triphosphatase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I9Z9_ACTTE)

HSP 1 Score: 60.1 bits (144), Expect = 8.830e-9
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   28 KLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFVFV 264
            ++FASF+T R +Y +DG  ID+D ASFGY V E+E M G +  +IA A   I  LA+ LGI  +   +Q  K+G ++++
Sbjct:  112 RVFASFKTRRMRYEIDGLFIDLDSASFGYNVGEIEMMVGSKD-DIAGAEIKIESLAKRLGINWKT--KQHGKLGEYLYL 187          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A1G1ZBA3_9BACT (CYTH domain-containing protein n=3 Tax=Parcubacteria group TaxID=1794811 RepID=A0A1G1ZBA3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 4.300e-6
Identity = 26/75 (34.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   34 FASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFV 258
            F S++T+R +++ +G+TID+D   FG+ V+EVE M  +E  +   A + I   A+V+G++ +   +Q  KV  F+
Sbjct:  105 FGSWKTNRRRFKKNGFTIDVDSVDFGHNVVEVELMV-EEGGDTEEAANRILNFAKVMGLEED---KQEGKVMVFI 175          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A8D2LI88_VARKO (Thiamine-triphosphatase n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LI88_VARKO)

HSP 1 Score: 52.8 bits (125), Expect = 5.850e-6
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   10 LEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFVF 261
            +E  G + FASF T R+KYRL    + +D+  FGY V EVE M  +E  E+ +A + I KL   LG   +E  R P K+ ++++
Sbjct:  124 VEELGLQEFASFVTQRSKYRLGDLNVVLDEMDFGYAVGEVEAMVRQE--EVPAALEQIRKLGVHLGF--DETTRFPGKMSAYLY 203          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A358C0P0_9BACT (CYTH domain-containing protein n=1 Tax=Candidatus Uhrbacteria bacterium TaxID=2053634 RepID=A0A358C0P0_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.260e-5
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   10 LEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHE 219
            L A GF+  + ++T+RT Y+ DG+TI  D+  FG+++ E+E +   E  ++    D I   AR  G++ E
Sbjct:   99 LTAIGFERISDYKTERTSYQKDGFTIVFDKMDFGFEICEIERVV-PEGTDLNQVADEILVFARKHGLKEE 167          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: A0A7S0KVG9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KVG9_MICPS)

HSP 1 Score: 50.1 bits (118), Expect = 7.090e-5
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   10 LEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGI 210
            + A G   FA F T R K+ LDG ++D+D ASFG+ V EVE +    A+++  A   +A +A+ LG+
Sbjct:  187 MTALGVVPFAEFTTRRAKFELDGASVDVDAASFGHAVCEVEVLCAY-ASQVPDAEAKVAYVAQRLGL 252          
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Match: UPI001E882877 (thiamine-triphosphatase n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI001E882877)

HSP 1 Score: 49.7 bits (117), Expect = 9.110e-5
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   10 LEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAAEIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFV 258
            +E  G + FA+F T R KY +DG ++D+D+A FGY V EVE +  K+  ++      I ++ R LG   EE  + P K+  ++
Sbjct:  159 VEELGLEEFATFVTHRRKYHVDGLSVDLDEADFGYAVGEVEAVVTKQE-DVPVVLKRIQEVFRQLGF--EEKTKIPGKMSVYL 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147789.3226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5LM87_9PHAE1.270e-1344.34CYTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
UPI000A2A96171.840e-944.87thiamine-triphosphatase-like n=1 Tax=Exaiptasia di... [more]
A0A2B4ST67_STYPI2.970e-939.39Thiamine-triphosphatase n=2 Tax=Stylophora pistill... [more]
A0A6P8I9Z9_ACTTE8.830e-943.04thiamine-triphosphatase-like n=1 Tax=Actinia teneb... [more]
A0A1G1ZBA3_9BACT4.300e-634.67CYTH domain-containing protein n=3 Tax=Parcubacter... [more]
A0A8D2LI88_VARKO5.850e-639.29Thiamine-triphosphatase n=2 Tax=Varanus komodoensi... [more]
A0A358C0P0_9BACT2.260e-534.29CYTH domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7S0KVG9_MICPS7.090e-540.30Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI001E8828779.110e-536.14thiamine-triphosphatase n=1 Tax=Sphaerodactylus to... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147789contigH-elongata_contig147789:597..1515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LRD6
EggNOG OGs2E3SU@1,2SAT4@2759
Ec32 ortholog descriptionCYTH-like domain
Ec32 orthologEc-06_002930.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147789.3226.1prot_H-elongata_contig147789.3226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147789 603..1515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.9495406-UTR-H-elongata_contig147789:596..6021622929875.9495406-UTR-H-elongata_contig147789:596..602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147789 597..602 +
1691679191.6870234-UTR-H-elongata_contig147789:596..6021691679191.6870234-UTR-H-elongata_contig147789:596..602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147789 597..602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.9700863-CDS-H-elongata_contig147789:602..6641622929875.9700863-CDS-H-elongata_contig147789:602..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147789 603..664 +
1691679191.6978722-CDS-H-elongata_contig147789:602..6641691679191.6978722-CDS-H-elongata_contig147789:602..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147789 603..664 +
1622929875.9819152-CDS-H-elongata_contig147789:1274..15151622929875.9819152-CDS-H-elongata_contig147789:1274..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147789 1275..1515 +
1691679191.7094965-CDS-H-elongata_contig147789:1274..15151691679191.7094965-CDS-H-elongata_contig147789:1274..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147789 1275..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147789.3226.1

>prot_H-elongata_contig147789.3226.1 ID=prot_H-elongata_contig147789.3226.1|Name=mRNA_H-elongata_contig147789.3226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLEAAGFKLFASFRTDRTKYRLDGYTIDIDQASFGYQVIEVETMSGKEAA
EIASAGDGIAKLARVLGIQHEEGPRQPVKVGSFVFVLCSAACQQLAIISG
*
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mRNA from alignment at H-elongata_contig147789:597..1515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147789.3226.1 ID=mRNA_H-elongata_contig147789.3226.1|Name=mRNA_H-elongata_contig147789.3226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig147789:597..1515+ (Himanthalia elongata Himel1 dioecious)
AAGAACATGCTGGAAGCGGCAGGTTTCAAACTGTTTGCATCATTTCGCAC AGACCGCACGAAGTACCGGTAAGCCGATCCTCTTATATACCCTGCTGTAT GTTCCGTTACGGGAGTTCGACCGCCCAAGTAAAACGTTTTTGTTGGTCTT GAGGAGGAACATCAAGGAACATGATGGTTGCTTCAAAATGTCGCTGTTTC GTTTGCTTCCTGCTGATGATGCCATTTGCTGAAGGAGTATTATTAGGTTC CCATTATTATACGCTGTATTTCAATGTCATCAATCATGTGGTCACTCCCC AGTAAATTCCCTCAATGCTGTCGCGGTCCGGGCTCAGCCTTCGATACAAC TCGGTAACCAAGGGTACCAATTTTGTCCCTCACGTTTCCGACAAAGATCG TTCCAGTGCTGAGAATCGAACTCACAAATTTAGAGTAGGTTGTACCACAG CTGAGGGTGGGCACTGCTATTTTGGCTTGACCAACGTAGGCATATCACGC GCGGGCGCTATCGCAGCAGCTGGTACGACGAGGGCGACCTTTTCGACGGC TTAACCGATCATGCTGAAAACGCTCTCCGTGCACGATGTGGAAAAAACGT CTTCATACGGAACACGCTTCGTGTTGGATAGTCACACTGCTGTGTCCTTG CTTTTCAACTTTTTTACTCATTTCACAGGCTTGATGGGTACACCATAGAT ATCGACCAAGCGTCATTTGGTTACCAAGTGATTGAAGTGGAGACCATGTC GGGCAAAGAAGCGGCGGAGATTGCTTCAGCTGGAGATGGCATTGCTAAGT TGGCGCGTGTTCTAGGCATTCAGCATGAAGAGGGTCCGAGACAGCCAGTA AAGGTCGGGAGTTTCGTCTTTGTTCTTTGTTCTGCTGCATGTCAACAATT GGCAATCATATCCGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig147789:597..1515+

>mRNA_H-elongata_contig147789.3226.1 ID=mRNA_H-elongata_contig147789.3226.1|Name=mRNA_H-elongata_contig147789.3226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig147789:597..1515+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGAAGCGGCAGGTTTCAAACTGTTTGCATCATTTCGCACAGACCG
CACGAAGTACCGATGCTGGAAGCGGCAGGTTTCAAACTGTTTGCATCATT
TCGCACAGACCGCACGAAGTACCGGCTTGATGGGTACACCATAGATATCG
ACCAAGCGTCATTTGGTTACCAAGTGATTGAAGTGGAGACCATGTCGGGC
AAAGAAGCGGCGGAGATTGCTTCAGCTGGAGATGGCATTGCTAAGTTGGC
GCGTGTTCTAGGCATTCAGCATGAAGAGGGTCCGAGACAGCCAGTAAAGG
TCGGGAGTTTCGTCTTTGTTCTTTGTTCTGCTGCATGTCAACAATTGGCA
ATCATATCCGGTTGAGCTTGATGGGTACACCATAGATATCGACCAAGCGT
CATTTGGTTACCAAGTGATTGAAGTGGAGACCATGTCGGGCAAAGAAGCG
GCGGAGATTGCTTCAGCTGGAGATGGCATTGCTAAGTTGGCGCGTGTTCT
AGGCATTCAGCATGAAGAGGGTCCGAGACAGCCAGTAAAGGTCGGGAGTT
TCGTCTTTGTTCTTTGTTCTGCTGCATGTCAACAATTGGCAATCATATCC
GGTTGA
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