prot_H-elongata_contig1477.3224.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1477.3224.1
Unique Nameprot_H-elongata_contig1477.3224.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length65
Homology
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BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.470e-14
Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:    2 LASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRNILP 53
            LASLARRV CIP  QAQSE VF S GL VTK R R+DP+NV LMVFLRN  P
Sbjct:  494 LASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPP 545
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BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.800e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0 
Query:    3 ASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRNIL 52
            +S   RV CIP SQ QSE VF S GL VTK R R+DP+NVELM+FLRN+L
Sbjct:  423 SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVL 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE7.470e-1473.08Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE5.800e-1266.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 2..50
e-value: 2.6E-8
score: 33.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1477contigH-elongata_contig1477:15985..16179 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1477.3224.1mRNA_H-elongata_contig1477.3224.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1477 15961..16179 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1477.3224.1 ID=prot_H-elongata_contig1477.3224.1|Name=mRNA_H-elongata_contig1477.3224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MLASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRN
ILPGWTSGMEIVRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf