mRNA_H-elongata_contig1477.3224.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1477.3224.1
Unique NamemRNA_H-elongata_contig1477.3224.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.550e-18
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 RVKAWEYPMLASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRNILP 183
            RVKA EYP LASLARRV CIP  QAQSE VF S GL VTK R R+DP+NV LMVFLRN  P
Sbjct:  485 RVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPP 545
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BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.040e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   31 ASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRNIL 180
            +S   RV CIP SQ QSE VF S GL VTK R R+DP+NVELM+FLRN+L
Sbjct:  423 SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVL 472
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BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Match: UPI001E1BACDB (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BACDB)

HSP 1 Score: 50.1 bits (118), Expect = 2.570e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    7 KAWEYPMLASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFL 168
            + +++P+LA  AR++  I  + A SE VF + G  VT+ R RLDP+NV+ ++FL
Sbjct:  281 RQYDFPLLAIYARQILGIVATSASSERVFSTGGNVVTQQRQRLDPQNVDKLIFL 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1477.3224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE3.550e-1873.77Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE8.040e-1266.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001E1BACDB2.570e-542.59E3 SUMO-protein ligase ZBED1-like n=1 Tax=Daphnia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1477contigH-elongata_contig1477:15961..16179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size195
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.8050475-UTR-H-elongata_contig1477:15960..159841622929875.8050475-UTR-H-elongata_contig1477:15960..15984Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1477 15961..15984 +
1691679191.6526344-UTR-H-elongata_contig1477:15960..159841691679191.6526344-UTR-H-elongata_contig1477:15960..15984Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1477 15961..15984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.820573-CDS-H-elongata_contig1477:15984..161791622929875.820573-CDS-H-elongata_contig1477:15984..16179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1477 15985..16179 +
1691679191.6613097-CDS-H-elongata_contig1477:15984..161791691679191.6613097-CDS-H-elongata_contig1477:15984..16179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1477 15985..16179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1477.3224.1prot_H-elongata_contig1477.3224.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1477 15985..16179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1477.3224.1

>prot_H-elongata_contig1477.3224.1 ID=prot_H-elongata_contig1477.3224.1|Name=mRNA_H-elongata_contig1477.3224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MLASLARRVPCIPISQAQSEHVFLSTGLAVTKARPRLDPKNVELMVFLRN
ILPGWTSGMEIVRR*
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mRNA from alignment at H-elongata_contig1477:15961..16179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1477.3224.1 ID=mRNA_H-elongata_contig1477.3224.1|Name=mRNA_H-elongata_contig1477.3224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig1477:15961..16179+ (Himanthalia elongata Himel1 dioecious)
CGTGTCAAGGCGTGGGAGTATCCCATGCTGGCTTCACTGGCTCGCCGGGT
ACCGTGTATACCAATATCCCAGGCGCAATCGGAGCATGTATTTTTGTCGA
CAGGACTAGCCGTGACAAAGGCACGCCCTCGACTGGACCCAAAAAACGTA
GAGCTCATGGTGTTCCTGCGTAATATTCTACCGGGGTGGACAAGTGGAAT
GGAAATTGTAAGGAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig1477:15961..16179+

>mRNA_H-elongata_contig1477.3224.1 ID=mRNA_H-elongata_contig1477.3224.1|Name=mRNA_H-elongata_contig1477.3224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig1477:15961..16179+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCTTCACTGGCTCGCCGGGTACCGTGTATACCAATATCCCAGGC
GCAATCGGAGCATGTATTTTTGTCGACAGGACTAGCCGTGACAAAGGCAC
GCCCTCGACTGGACCCAAAAAACGTAGAGCTCATGGTGTTCCTGCGTAAT
ATTCTACCGGGGTGGACAAGTGGAATGGAAATTGTAAGGAGATGAATGCT
GGCTTCACTGGCTCGCCGGGTACCGTGTATACCAATATCCCAGGCGCAAT
CGGAGCATGTATTTTTGTCGACAGGACTAGCCGTGACAAAGGCACGCCCT
CGACTGGACCCAAAAAACGTAGAGCTCATGGTGTTCCTGCGTAATATTCT
ACCGGGGTGGACAAGTGGAATGGAAATTGTAAGGAGATGA
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