mRNA_H-elongata_contig147584.3221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147584.3221.1
Unique NamemRNA_H-elongata_contig147584.3221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: D8LFD6_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.130e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   55 QTRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            +TRQWSSLELIASENFTSRAVMDCLGSALTNK    VP
Sbjct:   31 KTRQWSSLELIASENFTSRAVMDCLGSALTNKYAEGVP 68
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A7S1U8X5_9STRA (Glycine hydroxymethyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8X5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.620e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   61 RQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            RQWSSLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   47 RQWSSLELIASENFTSRAVMDCLGSALTNKYSEGLP 82
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A7R9U152_9STRA (Serine hydroxymethyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U152_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.440e-11
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 VVLSIPDVGVWRVIQT---RQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            V L + D  ++ +I+    RQWSSLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   12 VPLEMHDPALYELIEREKQRQWSSLELIASENFTSRAVMDCLGSALTNKYSEGLP 66
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A183S576_9TREM (Glycine hydroxymethyltransferase n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183S576_9TREM)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 NLLTVVLSIPDVGVWRVIQ---TRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            N +T +L I D+ +W +IQ   +RQ SSLELIASENF S+++++CLGS LTNK     P
Sbjct:   27 NCVTRMLEIKDIELWELIQKEKSRQRSSLELIASENFVSQSILECLGSCLTNKYSEGYP 85
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A7S1XVR9_9STRA (Glycine hydroxymethyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVR9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.080e-11
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   61 RQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            RQWSSLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   93 RQWSSLELIASENFTSRAVMDCLGSALTNKYSEGLP 128
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A7S1CXT5_CYCTE (Glycine hydroxymethyltransferase (Fragment) n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXT5_CYCTE)

HSP 1 Score: 63.5 bits (153), Expect = 5.680e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   55 QTRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            ++RQW SLELIASENFTS+AVMDCLGSALTNK    +P
Sbjct:   62 KSRQWRSLELIASENFTSKAVMDCLGSALTNKYSEGIP 99
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A7S2R9J6_9STRA (Serine hydroxymethyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R9J6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.410e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   55 QTRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            + RQW SLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   27 KNRQWKSLELIASENFTSRAVMDCLGSALTNKYSEGIP 64
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A836CHR3_9STRA (Glycine hydroxymethyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHR3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.760e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   55 QTRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            +TRQWS LELIASENFTSRAVM+CLGSALTNK    +P
Sbjct:   29 KTRQWSCLELIASENFTSRAVMECLGSALTNKYAEGLP 66
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BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: B5Y594_PHATC (Serine hydroxymethyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y594_PHATC)

HSP 1 Score: 63.9 bits (154), Expect = 1.760e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   55 QTRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            ++RQW SLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   30 KSRQWRSLELIASENFTSRAVMDCLGSALTNKYAEGLP 67
[Close]
BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Match: A0A5A8DGJ8_CAFRO (Serine hydroxymethyltransferase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGJ8_CAFRO)

HSP 1 Score: 63.9 bits (154), Expect = 1.760e-10
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   13 VVLSIPDVGVWRVIQ---TRQWSSLELIASENFTSRAVMDCLGSALTNKVRNAVP 168
            V L   D  ++ +I+    RQW SLELIASENFTSRAVMDCLGSALTNK    +P
Sbjct:   21 VALKEHDPEMFELIEREKNRQWKSLELIASENFTSRAVMDCLGSALTNKYAEGLP 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147584.3221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD6_ECTSI4.130e-1286.84Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A7S1U8X5_9STRA9.620e-1286.11Glycine hydroxymethyltransferase (Fragment) n=1 Ta... [more]
A0A7R9U152_9STRA1.440e-1163.64Serine hydroxymethyltransferase n=1 Tax=Pinguiococ... [more]
A0A183S576_9TREM1.590e-1152.54Glycine hydroxymethyltransferase n=1 Tax=Schistoso... [more]
A0A7S1XVR9_9STRA2.080e-1186.11Glycine hydroxymethyltransferase (Fragment) n=1 Ta... [more]
A0A7S1CXT5_CYCTE5.680e-1176.32Glycine hydroxymethyltransferase (Fragment) n=2 Ta... [more]
A0A7S2R9J6_9STRA9.410e-1178.95Serine hydroxymethyltransferase n=1 Tax=Eucampia a... [more]
A0A836CHR3_9STRA1.760e-1078.95Glycine hydroxymethyltransferase n=2 Tax=Tribonema... [more]
B5Y594_PHATC1.760e-1078.95Serine hydroxymethyltransferase n=2 Tax=Phaeodacty... [more]
A0A5A8DGJ8_CAFRO1.760e-1061.82Serine hydroxymethyltransferase n=2 Tax=Cafeteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147584contigH-elongata_contig147584:210..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog2850.Phatr18665
Preferred nameSHMT-L
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
EggNOG free text desc.Serine hydroxymethyltransferase
EggNOG OGs2XE97@2836,COG0112@1,KOG2467@2759
EC2.1.2.1
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionserine hydroxymethyltransferase 2
Ec32 orthologEc-24_002640.1
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.4969513-CDS-H-elongata_contig147584:209..3801622929875.4969513-CDS-H-elongata_contig147584:209..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147584 210..380 -
1691679191.5361693-CDS-H-elongata_contig147584:209..3801691679191.5361693-CDS-H-elongata_contig147584:209..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147584 210..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147584.3221.1prot_H-elongata_contig147584.3221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147584 210..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147584.3221.1

>prot_H-elongata_contig147584.3221.1 ID=prot_H-elongata_contig147584.3221.1|Name=mRNA_H-elongata_contig147584.3221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
NLLTVVLSIPDVGVWRVIQTRQWSSLELIASENFTSRAVMDCLGSALTNK
VRNAVPL
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mRNA from alignment at H-elongata_contig147584:210..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147584.3221.1 ID=mRNA_H-elongata_contig147584.3221.1|Name=mRNA_H-elongata_contig147584.3221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig147584:210..380- (Himanthalia elongata Himel1 dioecious)
AATCTTCTGACGGTTGTCCTATCAATTCCCGATGTCGGCGTGTGGCGTGT
CATACAGACGCGGCAATGGTCTAGCCTCGAGCTGATCGCAAGCGAGAACT
TCACATCAAGGGCGGTCATGGACTGCTTGGGCTCGGCCCTCACCAACAAG
GTTCGTAACGCTGTACCCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig147584:210..380-

>mRNA_H-elongata_contig147584.3221.1 ID=mRNA_H-elongata_contig147584.3221.1|Name=mRNA_H-elongata_contig147584.3221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig147584:210..380- (Himanthalia elongata Himel1 dioecious)
AATCTTCTGACGGTTGTCCTATCAATTCCCGATGTCGGCGTGTGGCGTGT
CATACAGACGCGGCAATGGTCTAGCCTCGAGCTGATCGCAAGCGAGAACT
TCACATCAAGGGCGGTCATGGACTGCTTGGGCTCGGCCCTCACCAACAAG
GTTCGTAACGCTGTACCCCTCAATCTTCTGACGGTTGTCCTATCAATTCC
CGATGTCGGCGTGTGGCGTGTCATACAGACGCGGCAATGGTCTAGCCTCG
AGCTGATCGCAAGCGAGAACTTCACATCAAGGGCGGTCATGGACTGCTTG
GGCTCGGCCCTCACCAACAAGGTTCGTAACGCTGTACCCCTC
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