mRNA_H-elongata_contig14750.3217.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: D8LJZ1_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ1_ECTSI) HSP 1 Score: 298 bits (763), Expect = 3.280e-97 Identity = 147/224 (65.62%), Postives = 183/224 (81.70%), Query Frame = 1
Query: 1 APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
AP T AL +PP++AMM VD +H TGMPYWMTI+AIT +RT ILPIG+LAARN ARTA MKPEMD+LQ AIK DQQSSQ R+A+RYRQET+AL++K+ SL+MNAALP+VQLPLFI FFLGLR+MP+V PEFATGG LWF++LGA DPYMIFP+ TG+ + + ELGG+G ++A SS +M+AGMR M+L++ PLTM + GVF+YWTTSN +S+ QT K
Sbjct: 48 APETFKMALYTPPQVAMMAVDYVHATTGMPYWMTIVAITVGIRTAILPIGLLAARNGARTAAMKPEMDELQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFK 271
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6H5J862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J862_9PHAE) HSP 1 Score: 298 bits (763), Expect = 4.620e-95 Identity = 148/224 (66.07%), Postives = 182/224 (81.25%), Query Frame = 1
Query: 1 APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
AP T AL +PP+LAMM VD +H TGMPYWMTI+AIT +RT ILPIG+LAARN ARTA MKPEMD LQ AIK DQQSSQ R+A+RYRQET+AL++K+ SL+MNAALP+VQLPLFI FFLGLR+MP+V PEFATGG LWF++LGA DPYMIFP+ TG+ + + ELGG+G ++A SS +M+AGMR M+L++ PLTM + GVF+YWTTSN +S+ QT K
Sbjct: 223 APETFKMALYTPPQLAMMAVDYVHATTGMPYWMTIIAITVGIRTAILPIGLLAARNGARTAAMKPEMDALQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFK 446
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S2RKG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKG9_9STRA) HSP 1 Score: 173 bits (438), Expect = 6.570e-49 Identity = 89/216 (41.20%), Postives = 135/216 (62.50%), Query Frame = 1
Query: 34 PPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKVCS 681
P + M +D +HT +GMP+WMTIMA+T +LR +LP+ + +N+ R +KPE++ + E IK D +S+ +R + Y ++ +AL++KYD + + +QLP+F+SFF GL+ M + +PE GG LWF +L AADP IFP+ T + + + ELG DGM A M+ MR + L+++P T +P VF YW+ +N SV QT LKV S
Sbjct: 57 PSHMVMQGIDLIHTTSGMPFWMTIMAVTISLRVAMLPVLLSTIKNARRMTQLKPELEIISERIKADPKSNDPQRQQMYSKQLQALFQKYDAHPIRSFYGIGIQLPVFMSFFFGLKSMGDFYPEIQQGGTLWFTDLAAADPTFIFPVVTTASFIFMIELGADGMD-ANQQATMKNVMRGLGLLMLPFTYQMPCAVFCYWSAANFMSVCQTLALKVPS 271
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: K3WL12_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL12_GLOUD) HSP 1 Score: 166 bits (419), Expect = 5.520e-46 Identity = 86/223 (38.57%), Postives = 143/223 (64.13%), Query Frame = 1
Query: 7 ATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
A + F LS ++A+ +D +H TG+P+W TI+A TFA+RT PI V++ RNSA+ +P+M++L+ + + Q + ++ + +AL KK+D + + P+ Q+P+F+ FF GL+++ + FPE++T G LWF +L AADP + P+ + + ELGG+ + Q++ GMRA+++V+IP+TMN G+F+YW +SNLF+V QTA L+V
Sbjct: 101 ADLGFGLS---DIAIRSLDVIHATTGLPWWATIIATTFAVRTVFFPITVISMRNSAKMKAFQPDMEKLKAEMDLNPQKDP-NTVKEFQTKYKALMKKHDVNPFLGMITPMSQIPVFLGFFWGLQEIAKYFPEYSTEGTLWFNDLSAADPTLALPVISSALMVASVELGGEALP-EDYKDQVKFGMRALAVVMIPITMNFSSGIFVYWVSSNLFTVVQTAALRV 318
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S3UGU2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGU2_9CHLO) HSP 1 Score: 163 bits (413), Expect = 2.290e-45 Identity = 87/207 (42.03%), Postives = 129/207 (62.32%), Query Frame = 1
Query: 58 VDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELG-GDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
++ +H TGMP+W TI A TFALRT + P+ + +N+A+ ++ +PE+++L E +K Q SS + E+Y+ + + ++KKYDC + + LVQ P FI FF+ LR M E P FA GG LWF +L ADP P+ LT L ELG DGM + M+ MR +S+ +IPLT ++P GV +YW ++N FS+ Q AL+K+
Sbjct: 96 LEFVHLQTGMPWWATIAATTFALRTLLFPVVIYQIKNTAKLSLARPEIEKLAEQLKM-QGSSDPKTVEKYQGQIQEVWKKYDCHPIKSFGSILVQAPTFIGFFVALRHMAEKVPTFAQGGTLWFTDLSVADPTYALPVACSLTFLATVELGVADGMQGQPNQKGMKLFMRGLSVALIPLTASMPSGVLMYWCSANAFSLLQAALMKI 301
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6A3UNJ7_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UNJ7_9STRA) HSP 1 Score: 162 bits (410), Expect = 8.650e-45 Identity = 87/231 (37.66%), Postives = 148/231 (64.07%), Query Frame = 1
Query: 1 APATVDFALSSP-----PELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQ-QSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
A +T+D+A S +LA+ +D +H+ TG+P+W TI+A T A+RT PI V++ RN+A+ + +P+M++L+ I ++ Q+S+ A+ ++++ +AL KK+ + + P+ Q+P+F+ FF GL+ + + FPE+A G W +L AADPYM+ P+ + + ELGGD M+ +++ GMR + +++PLTMN G+F+YW TSN F+V Q+ALL+V
Sbjct: 84 AASTIDYASVSDLGFGLSDLAIRSLDVIHSTTGLPWWATIIATTVAVRTVFFPITVVSMRNAAKMKLFQPDMEKLKAEIDSNPTQNSET--AQEFQKKYKALMKKHGVNPFKSVLTPMSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVSDLSAADPYMVLPILSSALMIASVELGGDAMA-GEMKDKLKFGMRFFAAIMVPLTMNFQSGIFVYWVTSNAFTVAQSALLRV 311
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S3XMS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMS5_HETAK) HSP 1 Score: 163 bits (412), Expect = 1.480e-44 Identity = 87/213 (40.85%), Postives = 130/213 (61.03%), Query Frame = 1
Query: 34 PPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
P +L + VD +H + +PYW I+A T LRT +LPI + +N AR AIM+PE+++L E IK + + ++ YR+E +AL+KK+ CS M + L QLP+F+S F GLRKM E + + + GGA WF +L AD I P + L + ELG DGM+ ++ M+ MR M + ++PLT+NIP V +YW TSN +++ Q L+
Sbjct: 100 PSDLMIRYVDLLHVSLDLPYWTAIIAGTVMLRTMLLPITIKTIKNGARMAIMRPELEKLTEKIKKNTDKTMAKQMH-YRKEMQALFKKHQCSPMASLGTALTQLPIFMSAFFGLRKMGE-YVDISQGGAYWFTDLAVADATYILPAACSASFLAMVELGADGMNQGPNAATMKTVMRVMGVAMLPLTVNIPQSVLLYWCTSNAYAMAQALALR 310
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6V2KXT4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2KXT4_9STRA) HSP 1 Score: 162 bits (410), Expect = 5.170e-44 Identity = 89/218 (40.83%), Postives = 136/218 (62.39%), Query Frame = 1
Query: 31 SPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPE-FATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGM---RAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
+PP+ + +++ +H T + Y +TI+ +T RT + P+ V + +N AR A M+PEMD L+ I + ++ E +AL+KKY+C+ + LP+VQ P+F+SFF GLRKMP+ FPE +TGG LWF +LG ADPY + P+ + + LL+ ELG D M MA++ Q R M RA+ ++++P TMN VF YWTT+N FS+ Q+ +
Sbjct: 152 NPPDQVINVINKVHEITDLSYGLTIVGLTLGFRTLMFPLFVKSQQNVARMAHMRPEMDVLKAKIDKMGGNPDTETQMKHGMEMKALFKKYNCNPFKSLMLPIVQAPIFMSFFFGLRKMPDYFPEELSTGGFLWFPDLGGADPYCVLPVISAGSFLLMMELGKDQM-MASNPEQGRMMMTFFRALGIIMVPATMNFSTAVFCYWTTNNTFSLCQSIAFR 368
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A2P4XDZ8_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDZ8_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.000e-43 Identity = 80/212 (37.74%), Postives = 137/212 (64.62%), Query Frame = 1
Query: 40 ELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
++A+ +D +H TG+P+W TI+A T A+RT PI V++ RN+A+ + +P+M++L++ ++ + + E ++Q+ +AL KK+D + + PL Q+P+F+ FF GL+ + + FPE+A G W +L AADP M P+ + + L ELGG+ M+ ++ GMR +L+++PLTMN G+F+YW TSN+F++ QTALL++
Sbjct: 105 DIAIRSLDMIHATTGLPWWATIIATTVAVRTVFFPITVISMRNAAKMKMFQPDMEKLRDEMEANPTKTPESTRE-FQQKYKALMKKHDVNPFKSVLTPLSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVTDLSAADPTMGLPIASAVLMLASVELGGEAMA-GEMKNNLKFGMRCFALMMVPLTMNFQSGIFVYWVTSNMFTLTQTALLRL 314
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A0P1AY12_PLAHL (Mitochondrial inner membrane protein oxa1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY12_PLAHL) HSP 1 Score: 164 bits (416), Expect = 4.630e-43 Identity = 89/230 (38.70%), Postives = 147/230 (63.91%), Query Frame = 1
Query: 1 APATVDFALSSP-----PELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
A + VDFA S +LA+ +D +HT TG+P+W TI+A T A+RT P+ V++ RN+A+ + +P+M++L+E + + + + A+ ++++ RAL KK+D + + PL Q+P+F+ FF GL+ + + FPE+A G W +L AADP M P+ + + ELGGD MS + + +M+ GMR +L++IPLTMN G+F+YW TSN F++ QTA++++
Sbjct: 601 ASSAVDFASVSDLGYSLSDLAIRSLDLIHTTTGLPWWATIIATTVAVRTAFFPMTVISMRNAAKMKLFQPDMEKLREEMDANP-TRDPQTAKEFQKKYRALMKKHDVNPFKSVLTPLSQIPVFLGFFWGLQDISKYFPEYAHEGVGWVSDLSAADPTMTLPVISSALMVASVELGGDAMS-SEMADKMKFGMRCFALLMIPLTMNFQSGIFVYWVTSNTFTLMQTAVMRL 828 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14750.3217.1 >prot_H-elongata_contig14750.3217.1 ID=prot_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGback to top mRNA from alignment at H-elongata_contig14750:3249..4696- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14750.3217.1 ID=mRNA_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1448bp|location=Sequence derived from alignment at H-elongata_contig14750:3249..4696- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14750:3249..4696- >mRNA_H-elongata_contig14750.3217.1 ID=mRNA_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig14750:3249..4696- (Himanthalia elongata Himel1 dioecious)back to top |