mRNA_H-elongata_contig147342.3211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147342.3211.1
Unique NamemRNA_H-elongata_contig147342.3211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.170e-26
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNV T A +G N IGH + ++++  +A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE I    G++   +ECI+ RL+K R+ I R   VTFV  YAPTE   +T G   N+K  + TAL++ +  V +R++
Sbjct:   11 FGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDH 165          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.050e-25
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEG--ENSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++  +A GCDVIGLQET+R G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI+ RL+K R+ I R   VTF+  YAPTE    TEG   N+K  + TAL++ +  V +R++
Sbjct:  177 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDH 331          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.920e-24
Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++  +A GCDVIGLQET+R G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI+ RL+K R+ I R   VTFV  YAPTE    T G   N+K  + TAL++ +  V +R++
Sbjct:   88 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDH 242          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.500e-24
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE 354
            FGTFNVRT A +G N IGH + ++++  +A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI  RL+K R+ I R   +TFV  YAPTE
Sbjct:  150 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTE 272          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.190e-24
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAP-TEEATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++  +  GCDVIGLQET+R+G   I   GY V +SG   G K   G H VG+AIKE + + AG++   +ECI+ RL+K R+ I R   VTFV  YAP T   T G   N+K    TAL++ +  V +R++
Sbjct:  125 FGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDH 278          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 9.900e-24
Identity = 69/155 (44.52%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNV T A +G N IGH + ++++  +A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI+ RL+K R+ I R   VTFV  YAPTE    T G   N+K  + TAL++ +  V +R++
Sbjct:  659 FGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDH 813          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.320e-23
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FG FNVRT A +G   IGH + ++++  +A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI+ RL+K R+ I R   VTFV  YAPTE    T G   N+K  + TAL++ +  V +R++
Sbjct:   61 FGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDH 215          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.370e-23
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISIRYKF-VTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++ ++A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE +    G++   +ECI+ RL+K R+ I +   V  V  YAPTE    T G   N+K  + TAL++ +  V +R++
Sbjct:  135 FGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDH 289          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.440e-23
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++  +A GCDVIGLQET+R+G   I   GY + +SG   G K   G H VG+AIKE +    G++   +EC + RL+K R+ I R   VTFV  YA TE    T G   N+K  + TAL++ +  V +R++
Sbjct:  822 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDH 976          
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.910e-23
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNSIGH-IDSLLRHYAARGCDVIGLQETKRDGHSEITAFGYRVYFSGDCTGVK---GQHEVGLAIKEEIINKAGKDDIAIECINARLLKARISI-RYKFVTFVTAYAPTE--EATEGE--NSK--YITALNSTVSSVPAREY 432
            FGTFNVRT A +G N IGH + ++++  +A GCDVIGLQET+R G   I   GY + +SG   G K   G H VG+ IKE +    G++   +ECI  RL+K R+ I R   V FV  YAPTE    T G   N+K  + TAL++ +  V +R++
Sbjct:   83 FGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDH 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147342.3211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE5.170e-2645.16Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE7.050e-2545.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE1.920e-2445.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L660_9PHAE2.500e-2448.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU4_9PHAE5.190e-2445.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H7_9PHAE9.900e-2444.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.320e-2343.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A7_9PHAE1.370e-2343.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0W6_9PHAE6.440e-2343.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KV75_9PHAE6.910e-2343.87Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147342contigH-elongata_contig147342:100..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.6399047-CDS-H-elongata_contig147342:99..5311622929874.6399047-CDS-H-elongata_contig147342:99..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147342 100..531 +
1691679191.1994562-CDS-H-elongata_contig147342:99..5311691679191.1994562-CDS-H-elongata_contig147342:99..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147342 100..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147342.3211.1prot_H-elongata_contig147342.3211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147342 100..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147342.3211.1

>prot_H-elongata_contig147342.3211.1 ID=prot_H-elongata_contig147342.3211.1|Name=mRNA_H-elongata_contig147342.3211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
FGTFNVRTAAVNGVNSIGHIDSLLRHYAARGCDVIGLQETKRDGHSEITA
FGYRVYFSGDCTGVKGQHEVGLAIKEEIINKAGKDDIAIECINARLLKAR
ISIRYKFVTFVTAYAPTEEATEGENSKYITALNSTVSSVPAREY
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mRNA from alignment at H-elongata_contig147342:100..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147342.3211.1 ID=mRNA_H-elongata_contig147342.3211.1|Name=mRNA_H-elongata_contig147342.3211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig147342:100..531+ (Himanthalia elongata Himel1 dioecious)
TTCGGCACGTTCAACGTTCGCACAGCAGCTGTTAACGGCGTCAATAGTAT TGGTCATATCGACTCCCTCTTGAGACACTATGCTGCGAGAGGGTGTGATG TTATTGGACTGCAGGAGACAAAACGGGACGGACATTCTGAAATAACTGCA TTTGGATACCGGGTCTATTTCAGTGGTGATTGCACCGGGGTCAAAGGGCA ACATGAGGTGGGACTAGCGATAAAGGAGGAGATCATTAACAAGGCCGGCA AGGACGACATAGCAATCGAGTGTATCAACGCACGTCTCCTGAAGGCTCGA ATATCGATTAGATATAAGTTTGTTACGTTTGTGACAGCCTACGCTCCGAC TGAGGAAGCGACGGAGGGGGAAAATTCCAAGTATATCACAGCCCTCAACA GCACCGTATCATCAGTGCCTGCTCGGGAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig147342:100..531+

>mRNA_H-elongata_contig147342.3211.1 ID=mRNA_H-elongata_contig147342.3211.1|Name=mRNA_H-elongata_contig147342.3211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig147342:100..531+ (Himanthalia elongata Himel1 dioecious)
TTCGGCACGTTCAACGTTCGCACAGCAGCTGTTAACGGCGTCAATAGTAT
TGGTCATATCGACTCCCTCTTGAGACACTATGCTGCGAGAGGGTGTGATG
TTATTGGACTGCAGGAGACAAAACGGGACGGACATTCTGAAATAACTGCA
TTTGGATACCGGGTCTATTTCAGTGGTGATTGCACCGGGGTCAAAGGGCA
ACATGAGGTGGGACTAGCGATAAAGGAGGAGATCATTAACAAGGCCGGCA
AGGACGACATAGCAATCGAGTGTATCAACGCACGTCTCCTGAAGGCTCGA
ATATCGATTAGATATAAGTTTGTTACGTTTGTGACAGCCTACGCTCCGAC
TGAGGAAGCGACGGAGGGGGAAAATTCCAAGTATATCACAGCCCTCAACA
GCACCGTATCATCAGTGCCTGCTCGGGAATACTTCGGCACGTTCAACGTT
CGCACAGCAGCTGTTAACGGCGTCAATAGTATTGGTCATATCGACTCCCT
CTTGAGACACTATGCTGCGAGAGGGTGTGATGTTATTGGACTGCAGGAGA
CAAAACGGGACGGACATTCTGAAATAACTGCATTTGGATACCGGGTCTAT
TTCAGTGGTGATTGCACCGGGGTCAAAGGGCAACATGAGGTGGGACTAGC
GATAAAGGAGGAGATCATTAACAAGGCCGGCAAGGACGACATAGCAATCG
AGTGTATCAACGCACGTCTCCTGAAGGCTCGAATATCGATTAGATATAAG
TTTGTTACGTTTGTGACAGCCTACGCTCCGACTGAGGAAGCGACGGAGGG
GGAAAATTCCAAGTATATCACAGCCCTCAACAGCACCGTATCATCAGTGC
CTGCTCGGGAATAC
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