mRNA_H-elongata_contig147306.3209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147306.3209.1
Unique NamemRNA_H-elongata_contig147306.3209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.230e-16
Identity = 118/186 (63.44%), Postives = 128/186 (68.82%), Query Frame = 1 
Query:    1 AKETARATLGQLAAKVQAEEKSRRSRATVVDGPVGDGEDSV-----------------GPAGPGXXXXXXXXXXXXXXXXXXXSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAASAEDSEGDDDNMSDESDGEGGTLGLCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            AK+++RATLGQLAAKVQAEEKSRR+RA V DG V DG+D+                        XXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXX XX   R AA A+             D EG    LC PGTEQTGRWTK EH+LFLKALKK+GKEWKRVACMV+TR
Sbjct:   78 AKDSSRATLGQLAAKVQAEEKSRRTRAGVGDG-VRDGDDTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXXGEGRGAARADXXXXXXXXXXXGEDSEG----LCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTR 258
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.360e-16
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  325 SEGDDDNMSDESDGEGGTLGLCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            S+ DDD+M       G   G+CAPGTEQTGRWTK EHDLFLKAL  +GKEWKRVA MV TR
Sbjct:    7 SDDDDDDMG------GSVQGVCAPGTEQTGRWTKGEHDLFLKALGVYGKEWKRVAAMVGTR 61
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 8.120e-16
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:  352 DESDGEGGTLGLCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            +ESDGE  + GLC PGTEQTGRWTK EH+LFL+ALKK+GKEWKRVACMV+TR
Sbjct:  730 EESDGED-SEGLCLPGTEQTGRWTKAEHELFLRALKKYGKEWKRVACMVRTR 780
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A7S3HM63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM63_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.620e-8
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  382 GLCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            G    G E TGRWT+ EH+LFL+ALKK+GKEWK+VA MVKTR
Sbjct:    9 GTVPSGHESTGRWTRPEHELFLQALKKYGKEWKKVAGMVKTR 50
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: W7TIJ3_9STRA (SANT/Myb domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIJ3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.590e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  385 LCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            +CAPG E TGRW++ EHD F+  LKK+GKEWKRVA  V TR
Sbjct:   53 VCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTR 93
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.700e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  385 LCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            L   G EQTGRWTKDEH+ FL  +K +GKEWK+VA  VKTR
Sbjct:   99 LVETGQEQTGRWTKDEHEAFLIGIKMYGKEWKKVAAKVKTR 139
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A4D9CLC8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLC8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.840e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  385 LCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            +CAPG E TGRW++ EHD F+  LKK+GKEWKRVA  V TR
Sbjct:  219 VCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTR 259
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: D8LE34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE34_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.310e-7
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  382 GLCAPGTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            G+C PG E TGRWT DEH LFL+ L+  GK WK++A +++TR
Sbjct:   22 GVCQPGNENTGRWTSDEHRLFLRGLELHGKGWKQIATLIQTR 63
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A6S8HTR1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8HTR1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.180e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  397 GTEQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            G EQTGRWT++EH+ FL ALK +GKEWK+VA  VKTR
Sbjct:  116 GQEQTGRWTREEHEAFLDALKVYGKEWKKVAAKVKTR 152
[Close]
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Match: A0A836C952_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C952_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.600e-6
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  403 EQTGRWTKDEHDLFLKALKKFGKEWKRVACMVKTR 507
            E TGRWTK EHDLF+KAL  +G+EW+ +A MV TR
Sbjct:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTR 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147306.3209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K5H7_9PHAE2.230e-1663.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHT8_9STRA3.360e-1667.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LG60_ECTSI8.120e-1678.85Histone deactylase of possible bacterial origin wi... [more]
A0A7S3HM63_9STRA2.620e-869.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TIJ3_9STRA2.590e-765.85SANT/Myb domain protein n=1 Tax=Nannochloropsis ga... [more]
A0A448YY97_9STRA3.700e-765.85Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A4D9CLC8_9STRA4.840e-765.85Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8LE34_ECTSI6.310e-757.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S8HTR1_9STRA9.180e-770.27Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A836C952_9STRA1.600e-665.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147306contigH-elongata_contig147306:296..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog2880.D8LG60
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.36806-CDS-H-elongata_contig147306:295..7451622929874.36806-CDS-H-elongata_contig147306:295..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147306 296..745 +
1691679191.0778356-CDS-H-elongata_contig147306:295..7451691679191.0778356-CDS-H-elongata_contig147306:295..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147306 296..745 +
1622929874.3860986-CDS-H-elongata_contig147306:1564..16211622929874.3860986-CDS-H-elongata_contig147306:1564..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147306 1565..1621 +
1691679191.0900576-CDS-H-elongata_contig147306:1564..16211691679191.0900576-CDS-H-elongata_contig147306:1564..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147306 1565..1621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147306.3209.1prot_H-elongata_contig147306.3209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147306 296..1621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147306.3209.1

>prot_H-elongata_contig147306.3209.1 ID=prot_H-elongata_contig147306.3209.1|Name=mRNA_H-elongata_contig147306.3209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
AKETARATLGQLAAKVQAEEKSRRSRATVVDGPVGDGEDSVGPAGPGASG
GGPGGGGGEGGGSGGGSSGGGGGSGAGGGEGGDGGGGSSGGGAADGGSGG
REAASAEDSEGDDDNMSDESDGEGGTLGLCAPGTEQTGRWTKDEHDLFLK
ALKKFGKEWKRVACMVKTR
back to top

mRNA from alignment at H-elongata_contig147306:296..1621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147306.3209.1 ID=mRNA_H-elongata_contig147306.3209.1|Name=mRNA_H-elongata_contig147306.3209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1326bp|location=Sequence derived from alignment at H-elongata_contig147306:296..1621+ (Himanthalia elongata Himel1 dioecious)
GCCAAGGAGACGGCGAGAGCCACCCTAGGACAGCTCGCCGCCAAGGTTCA
GGCAGAAGAGAAAAGCCGCCGCTCGCGTGCGACCGTGGTGGACGGCCCCG
TGGGAGATGGAGAAGACTCCGTCGGTCCCGCCGGCCCGGGGGCTTCAGGG
GGTGGCCCGGGAGGTGGCGGTGGTGAAGGTGGTGGTAGCGGCGGTGGCAG
CAGCGGTGGAGGAGGCGGTAGCGGTGCGGGGGGCGGGGAAGGAGGCGATG
GTGGCGGCGGCAGCAGCGGTGGTGGCGCGGCCGATGGTGGTAGCGGCGGA
AGAGAGGCGGCCTCGGCGGAGGACAGCGAAGGCGACGACGATAACATGTC
GGATGAGTCGGACGGGGAAGGAGGCACATTGGGACTATGTGCGCCGGGGA
CGGAGCAGACAGGCCGCTGGACCAAGGACGAGCATGACCTGTTCCTCAAG
GTGTGTGCTAGGCATTTGTGTGCGAAGGAGTATCGTTGCTTTCTGCTGTG
CTTCTTCTTGGTTTTTTTTTGTTCTCCTTTTGCTTTCTTTTTATTATGCC
ACCGTGCGCACGCTAGCTCAGTTTCTATACATTTCTATACTACCGACGGT
CATGATGAGAATGAATGAAGTTGCATTTTTTTGGAGGGGGGGTGCAAAAT
CATGAGCATTTTTTTTTTATTAAGTTTCTTTTTGGGGATCCGGTTTTAGA
CTAAATGCAGGACGGAAAACTACCTACAAGTAGTACTACTCTTAAGTTTT
TGGTAGACCCGACCCCCTGACCCAAACCGACACCCACACCCAATACTACT
TGTAAGTGATTTCTCCGTCCTGCACAAATACAATTGCAGGTGCGTCCTGC
ATTTAGGGGTTCTCCGGTTTTAAGGGGTTTGTTAGCACTTTTTTTTACCC
GTCTGTGTAGGATACTTCGTGTACGTCGCGTTGCTGCCCCTCATGGTTAA
GAGGGTACGGAGGATGTCGTCAGTTGACAGTCCCGCCGTCGATAGATAAA
CGCTTGCACTGCCAGCCGTCAGGTTTCGTTGGAAAATCTTCTCGCCGCGT
GTGTCAGCGACACGAAGAAGCTGTTGGTTAATTAATCGTGTGAATAGGCC
GAAGAAGATAGAGGAATAGAAAGAGAGAGAGAGAGATCTGGTTGACATTG
CTGCTGCTGCTGCACATCGATCACGCTTTATTTGCTCGGTTTTGACAATG
CCTCCACGCTGCCTGTGATGATAACGCTTCGTGTGTTGTTCGCGCGCGCG
CGCTCGCGCGTGTGAGAAGGCCTTGAAAAAGTTTGGCAAGGAATGGAAGC
GGGTCGCCTGTATGGTGAAGACGCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig147306:296..1621+

>mRNA_H-elongata_contig147306.3209.1 ID=mRNA_H-elongata_contig147306.3209.1|Name=mRNA_H-elongata_contig147306.3209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig147306:296..1621+ (Himanthalia elongata Himel1 dioecious)
GCCAAGGAGACGGCGAGAGCCACCCTAGGACAGCTCGCCGCCAAGGTTCA
GGCAGAAGAGAAAAGCCGCCGCTCGCGTGCGACCGTGGTGGACGGCCCCG
TGGGAGATGGAGAAGACTCCGTCGGTCCCGCCGGCCCGGGGGCTTCAGGG
GGTGGCCCGGGAGGTGGCGGTGGTGAAGGTGGTGGTAGCGGCGGTGGCAG
CAGCGGTGGAGGAGGCGGTAGCGGTGCGGGGGGCGGGGAAGGAGGCGATG
GTGGCGGCGGCAGCAGCGGTGGTGGCGCGGCCGATGGTGGTAGCGGCGGA
AGAGAGGCGGCCTCGGCGGAGGACAGCGAAGGCGACGACGATAACATGTC
GGATGAGTCGGACGGGGAAGGAGGCACATTGGGACTATGTGCGCCGGGGA
CGGAGCAGACAGGCCGCTGGACCAAGGACGAGCATGACCTGTTCCTCAAG
GCCAAGGAGACGGCGAGAGCCACCCTAGGACAGCTCGCCGCCAAGGTTCA
GGCAGAAGAGAAAAGCCGCCGCTCGCGTGCGACCGTGGTGGACGGCCCCG
TGGGAGATGGAGAAGACTCCGTCGGTCCCGCCGGCCCGGGGGCTTCAGGG
GGTGGCCCGGGAGGTGGCGGTGGTGAAGGTGGTGGTAGCGGCGGTGGCAG
CAGCGGTGGAGGAGGCGGTAGCGGTGCGGGGGGCGGGGAAGGAGGCGATG
GTGGCGGCGGCAGCAGCGGTGGTGGCGCGGCCGATGGTGGTAGCGGCGGA
AGAGAGGCGGCCTCGGCGGAGGACAGCGAAGGCGACGACGATAACATGTC
GGATGAGTCGGACGGGGAAGGAGGCACATTGGGACTATGTGCGCCGGGGA
CGGAGCAGACAGGCCGCTGGACCAAGGACGAGCATGACCTGTTCCTCAAG
GCCTTGAAAAAGTTTGGCAAGGAATGGAAGCGGGTCGCCTGTATGGTGAA
GACGCGCGCCTTGAAAAAGTTTGGCAAGGAATGGAAGCGGGTCGCCTGTA
TGGTGAAGACGCGC
back to top