mRNA_H-elongata_contig147292.3208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147292.3208.1
Unique NamemRNA_H-elongata_contig147292.3208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.710e-56
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 1
Query:    1 SYEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMA--AFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            SYE+DAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMA  AFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMA  FE   Q MFPELFEAHPDLLMQLV
Sbjct:  713 SYEEDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAFSAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAEKFETTVQLMFPELFEAHPDLLMQLV 813          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A1B6EX47_9HEMI (JmjC domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EX47_9HEMI)

HSP 1 Score: 126 bits (316), Expect = 1.520e-35
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y +  WNLN +P  DGS+L  +G  I G+ +PW+YVGM  +AFCWHNEDH+ YSINYLH G  K WYGVPG  A  FE   +   PELF++ PDLL QLV
Sbjct:   19 YVKSTWNLNNIPIDDGSVLGHIGGDISGMKIPWMYVGMCFSAFCWHNEDHWSYSINYLHWGEAKTWYGVPGDCAEKFEEVMREEAPELFDSQPDLLHQLV 118          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A6H5G5E0_9HEMI ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5G5E0_9HEMI)

HSP 1 Score: 137 bits (345), Expect = 1.560e-35
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y +  WNLN LP  D S+L+F+   I G+ +PW+Y GM  A FCWHNEDH+ YSINYLH G PK WYGVPGS A +FEAA Q   PELFE+ PDLL QLV
Sbjct:  416 YAKSPWNLNNLPVLDDSVLRFISADISGMKIPWMYAGMCFATFCWHNEDHWSYSINYLHRGDPKTWYGVPGSYAEEFEAAMQEAAPELFESQPDLLHQLV 515          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A6A4K8U8_APOLU (JmjC domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4K8U8_APOLU)

HSP 1 Score: 131 bits (329), Expect = 1.710e-35
Identity = 60/100 (60.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y    WNLN LP  D S+L+ +   I G+ +PW+Y GM  A FCWHNEDH+ YSINYLH G  K WYGVPGS A  FEAA Q+  PELFE+ PDLL QLV
Sbjct:  114 YANSPWNLNNLPVLDDSVLRHISADISGMKIPWMYAGMCFATFCWHNEDHWSYSINYLHLGEAKTWYGVPGSYAEQFEAAMQKAAPELFESQPDLLHQLV 213          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A0U9HKA4_KLENI (Transcription factor jumonji n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKA4_KLENI)

HSP 1 Score: 136 bits (343), Expect = 2.920e-35
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 SYEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            +Y + +WNLN +P  D S+L  +  QI GVMVPWLY+GM  ++FCWH EDH LYSINY H G PK+WYGVPGS A +FE   QR FP++F A PDLL QLV
Sbjct:  391 AYARSSWNLNNMPRDDASVLNRIDDQIPGVMVPWLYIGMMFSSFCWHYEDHCLYSINYCHWGEPKKWYGVPGSCASEFEEVMQRSFPDMFAAQPDLLFQLV 491          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A367J6G6_RHIST (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J6G6_RHIST)

HSP 1 Score: 135 bits (339), Expect = 9.760e-35
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   13 DAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            D WNLN LP +  SL   + T I G+MVPWLY+GM  +AFCWHNEDHY YSINY+H G  K WYG+PGS    FEA  +R  PELF+ HPDLL QLV
Sbjct:   15 DPWNLNVLPVAPQSLFTHINTDISGMMVPWLYIGMCFSAFCWHNEDHYTYSINYMHWGETKTWYGIPGSDTAKFEATMKRAMPELFDQHPDLLFQLV 111          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A6P7H0R2_DIAVI (lysine-specific demethylase lid-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H0R2_DIAVI)

HSP 1 Score: 127 bits (318), Expect = 1.650e-34
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y +  WNLN LP   GS+L  +  ++ G+ VPW+YVGM  + FCWHNEDH+ YSINYLH G PK WYGV G  A DFE   + + PELF+A PDLL QLV
Sbjct:   89 YAESGWNLNNLPVLPGSVLGHINAEVSGMKVPWMYVGMCFSTFCWHNEDHWSYSINYLHWGEPKTWYGVAGRQAEDFEETMKSVAPELFQAQPDLLHQLV 188          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A6A0H5G7_HYAAZ (JmjC domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H5G7_HYAAZ)

HSP 1 Score: 134 bits (336), Expect = 2.500e-34
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y  D+WNLN LP  +GS+L  +G  I G+ VPW+YVGM  + FCWHNEDH+ YSINYLH G PK WYGVPG  A  FEA  +   PELFE+ PDLL QLV
Sbjct:   12 YANDSWNLNNLPVQEGSVLAHIGCDISGMKVPWMYVGMCFSTFCWHNEDHWSYSINYLHWGEPKTWYGVPGGEAEKFEACMKSAAPELFESQPDLLHQLV 111          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A2N1JEA6_9BASI (Uncharacterized protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1JEA6_9BASI)

HSP 1 Score: 134 bits (336), Expect = 2.560e-34
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y +  WNLN +P +  SLL+++ ++I G+  PW+Y+GM  +AFCWHNEDHY YSINY H G+ K WYGVPG  A  FEAA QR+ PELF+++PDLL+QLV
Sbjct:  483 YARSGWNLNNMPIAPASLLRYIKSEISGMTAPWIYIGMMFSAFCWHNEDHYTYSINYQHVGATKTWYGVPGEDAEKFEAAMQRIAPELFDSNPDLLLQLV 582          
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Match: A0A8B7N359_HYAAZ ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7N359_HYAAZ)

HSP 1 Score: 134 bits (336), Expect = 2.560e-34
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    4 YEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGM--AAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV 297
            Y  D+WNLN LP  +GS+L  +G  I G+ VPW+YVGM  + FCWHNEDH+ YSINYLH G PK WYGVPG  A  FEA  +   PELFE+ PDLL QLV
Sbjct:  422 YANDSWNLNNLPVQEGSVLAHIGCDISGMKVPWMYVGMCFSTFCWHNEDHWSYSINYLHWGEPKTWYGVPGGEAEKFEACMKSAAPELFESQPDLLHQLV 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147292.3208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES6_ECTSI2.710e-5691.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1B6EX47_9HEMI1.520e-3557.00JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5G5E0_9HEMI1.560e-3562.00[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A6A4K8U8_APOLU1.710e-3560.00JmjC domain-containing protein n=1 Tax=Apolygus lu... [more]
A0A0U9HKA4_KLENI2.920e-3560.40Transcription factor jumonji n=1 Tax=Klebsormidium... [more]
A0A367J6G6_RHIST9.760e-3561.86Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
A0A6P7H0R2_DIAVI1.650e-3457.00lysine-specific demethylase lid-like n=1 Tax=Diabr... [more]
A0A6A0H5G7_HYAAZ2.500e-3461.00JmjC domain-containing protein n=1 Tax=Hyalella az... [more]
A0A2N1JEA6_9BASI2.560e-3458.00Uncharacterized protein n=1 Tax=Malassezia vespert... [more]
A0A8B7N359_HYAAZ2.560e-3461.00[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147292contigH-elongata_contig147292:175..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue4.7e-48
Seed eggNOG ortholog2880.D8LES6
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.2710068-CDS-H-elongata_contig147292:174..3521622929874.2710068-CDS-H-elongata_contig147292:174..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147292 175..352 -
1691679191.0448303-CDS-H-elongata_contig147292:174..3521691679191.0448303-CDS-H-elongata_contig147292:174..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147292 175..352 -
1622929874.2920957-CDS-H-elongata_contig147292:1098..12171622929874.2920957-CDS-H-elongata_contig147292:1098..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147292 1099..1217 -
1691679191.0658152-CDS-H-elongata_contig147292:1098..12171691679191.0658152-CDS-H-elongata_contig147292:1098..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147292 1099..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147292.3208.1prot_H-elongata_contig147292.3208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147292 175..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147292.3208.1

>prot_H-elongata_contig147292.3208.1 ID=prot_H-elongata_contig147292.3208.1|Name=mRNA_H-elongata_contig147292.3208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
SYEQDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAAFCWHNEDHY
LYSINYLHAGSPKRWYGVPGSMAGDFEAAAQRMFPELFEAHPDLLMQLV
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mRNA from alignment at H-elongata_contig147292:175..1217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147292.3208.1 ID=mRNA_H-elongata_contig147292.3208.1|Name=mRNA_H-elongata_contig147292.3208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig147292:175..1217- (Himanthalia elongata Himel1 dioecious)
TCGTACGAGCAGGACGCGTGGAACTTGAACTGCCTGCCGACGTCAGACGG TTCGCTACTCCAGTTCTTGGGGACACAGATTCAAGGGGTTATGGTACCTT GGCTCTACGTGGGTATGGCGTTCAGGCAAGAAAAAGGGAAAGACTATGAC AGACGCAGCCATATATATAATGAGTGGCAGAGAGAGAGAGAGAGAGAAAT AGAAAGAGAGGCTTTACCATTGATTATGGATGCAGGCGTTTTCCATCGTT GAAGCCATCATCAGCAGTCGTGTTTGTCCGGGTAGAGATTTGTACACATG GTGTGGTTTGACGTCGTGTGGTGTTTGCCATGCCGTATGAACTGATGGCA CACACCATATGCCGTACGGAATGTGGTGCGGAAGAGGGAAGAAAAACAAG CGCTGATTGGACGAGGAGAGAGGAGGATCCCCAAGGGCGAGTCGGAGGCA AACAAAAAGAATACTTGGGACATTTCGTAGGGAGGGTCGCCATCCCACCC TACGAGAATGAGGCCACATGACGCGCCGCATGGCTTCAACAAAATAATCT TAAGTCTAAGGCAGGGGCACGAGGAAAAAAAAACCCCCCGACAACCCGTG GGGGGAGTATACCGAAAAATTCGGGGCCGGGGTGATGAGACGAACGAACC AACGATAAAAGACCCTCAAATTAACACAGGCGCACACAGGTCCTAATAAT GGAGAAGGGGGGGTATGGACATCAAACGCCTCATTCTCTTCACTCTCTCC CCTCCCCTGCCCTCTTCCATTTTATTCCGTCTCTTCCATTTCATTCCGTC TCTTCTATTTCGTTCCGTTGTACTATAATTTTATTCCTTCCTTGTTTATT TCCTTGCTTCCTTAGCGCCTTCTGCTGGCACAACGAAGACCATTATCTGT ACTCGATCAATTACCTGCACGCGGGGTCTCCCAAGAGGTGGTACGGCGTG CCCGGGTCGATGGCCGGGGATTTCGAGGCGGCGGCGCAGCGCATGTTCCC GGAGCTGTTCGAGGCGCACCCCGACCTACTGATGCAACTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig147292:175..1217-

>mRNA_H-elongata_contig147292.3208.1 ID=mRNA_H-elongata_contig147292.3208.1|Name=mRNA_H-elongata_contig147292.3208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig147292:175..1217- (Himanthalia elongata Himel1 dioecious)
TCGTACGAGCAGGACGCGTGGAACTTGAACTGCCTGCCGACGTCAGACGG
TTCGCTACTCCAGTTCTTGGGGACACAGATTCAAGGGGTTATGGTACCTT
GGCTCTACGTGGGTATGGCTCGTACGAGCAGGACGCGTGGAACTTGAACT
GCCTGCCGACGTCAGACGGTTCGCTACTCCAGTTCTTGGGGACACAGATT
CAAGGGGTTATGGTACCTTGGCTCTACGTGGGTATGGCCGCCTTCTGCTG
GCACAACGAAGACCATTATCTGTACTCGATCAATTACCTGCACGCGGGGT
CTCCCAAGAGGTGGTACGGCGTGCCCGGGTCGATGGCCGGGGATTTCGAG
GCGGCGGCGCAGCGCATGTTCCCGGAGCTGTTCGAGGCGCACCCCGACCT
ACTGATGCAACTGGTGCGCCTTCTGCTGGCACAACGAAGACCATTATCTG
TACTCGATCAATTACCTGCACGCGGGGTCTCCCAAGAGGTGGTACGGCGT
GCCCGGGTCGATGGCCGGGGATTTCGAGGCGGCGGCGCAGCGCATGTTCC
CGGAGCTGTTCGAGGCGCACCCCGACCTACTGATGCAACTGGTG
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