mRNA_H-elongata_contig147269.3207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147269.3207.1
Unique NamemRNA_H-elongata_contig147269.3207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A835Z0K1_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.880e-30
Identity = 65/122 (53.28%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETT----GEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            R R       +   G+G+QGGDLD AC+A LD+ G+GLLVP+SRGIS A DPAAAA EFRD IN AR               E + PYQ+ F++F+L   VL F   TLKSGR+SPYFFNAG
Sbjct:  218 RARAAAPGLWILAPGIGAQGGDLDAACAAGLDANGLGLLVPISRGISAAKDPAAAAREFRDNINKARTAAAAASADQVCEQAEGMAPYQKDFIDFALSQNVLRFGSFTLKSGRQSPYFFNAG 339          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A6T5PNF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PNF4_HETAK)

HSP 1 Score: 122 bits (305), Expect = 3.090e-30
Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRET----TGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            R R    A  +   GVG QGGDL+ AC A LD++G GLLVPVSRGIS A D AAAA  FR++IN+AR  +K + +T     GE ILPYQ +F++F+L+ +VL F   TLKSGR SPYFFNAG
Sbjct:  201 RARAAAPAVWILAPGVGFQGGDLEAACLAGLDAEGGGLLVPVSRGISRAPDKAAAAEGFREQINAAR--RKKIAQTQECAAGEAILPYQEEFIQFALKQEVLRFGQFTLKSGRVSPYFFNAG 320          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: D8LJU0_ECTSI (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU0_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.830e-30
Identity = 71/134 (52.99%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGEM--------ILPYQRKFVEFSLEYQVLGF--------KLVTLKSGRESPYFFNAG 354
            R R       +   GVG+QGGDLDEACSAALD +GMGLLVPVSRGIS ADDPAA A   +DRIN+AR R    R+             +LPYQR+F+EFS+ ++VL F            LKS R+SPYFFNAG
Sbjct:  205 RVRAAAPDLWILAPGVGAQGGDLDEACSAALDERGMGLLVPVSRGISRADDPAAEAVALKDRINAARKRCTDQRKEPAXXXXXXXXXALLPYQREFIEFSMSHKVLKFGDFSEGGEAFFELKSKRQSPYFFNAG 338          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S1WFW6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WFW6_ALECA)

HSP 1 Score: 112 bits (279), Expect = 5.470e-27
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    4 QRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGE-------MILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            +R  +TA+ L P GVG+QGGDL+  C AA+ + G GLL+P+SRGIS A DP  AA +FRD IN  R   +   +  G        M+ P+QR F++ +L  QVL F   TLKSGR SPYFFNAG
Sbjct:   93 RRANSTAWILAP-GVGAQGGDLEACCRAAISADGYGLLLPISRGISAAADPGKAAQDFRDAINKVRASLRAEAKDAGADKAAAALMLKPFQRDFIDLALASQVLKFGTFTLKSGRSSPYFFNAG 215          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: K0T5J1_THAOC (Orotidine-5'-phosphate decarboxylase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5J1_THAOC)

HSP 1 Score: 109 bits (272), Expect = 3.340e-26
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   31 LFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            +   GVG+QGGDLD AC+A L+  G G+L+PVSRGIS + DPAA A + ++ INSAR   VR++   E   + I  YQR F+EF+L+  VL F    LKSGR SPYFFNAG
Sbjct:  228 ILAPGVGAQGGDLDAACAAGLNDHGSGMLIPVSRGISRSPDPAAEAIKLKEGINSAREAVVRRRKDEEGESQAIESYQRDFLEFALDEGVLKFGSFVLKSGRTSPYFFNAG 338          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S4J266_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J266_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.560e-26
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   16 TTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKGVR-------ETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            T+A+ L P GVG+QGGDLD AC A L++ G GLLVPVSRGIS A D AA + + RD IN AR   ++ K          E TG  + PYQ++F+EFSL   VL F    LKSGR SPYFFNAG
Sbjct:   90 TSAWILAP-GVGAQGGDLDAACRAGLNADGTGLLVPVSRGISRAGDRAAESKKIRDAINDAREAVIKSKSYSSACDADAEPTG--VAPYQKEFLEFSLAEGVLKFGSFVLKSGRTSPYFFNAG 209          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S4MWX1_9STRA (Orotate phosphoribosyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWX1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.040e-25
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   16 TTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKG-------VRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            T+A+ L P GVG+QGGDLD AC A L++ G GLLVPVSRGIS A D AA + + RD IN AR   ++ K        V E TG  + PYQ++F+EFSL   VL F    LKSGR SPYFFNAG
Sbjct:   90 TSAWILAP-GVGAQGGDLDAACRAGLNADGTGLLVPVSRGISRAGDRAAESKKIRDAINDAREAVIKSKSYSSACDAVAEPTG--VAPYQKEFLEFSLAEGVLKFGSFVLKSGRTSPYFFNAG 209          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A2R5GD95_9STRA (Orotate phosphoribosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD95_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.970e-25
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR--------VRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            + R    +  +   GVG QGGDL+ A  A L + GMGLLVPVSRGI+ A+DP AAA +FRD +N  R          K+   E   E + P+Q++F E +L  +VL F   TLKSGRESPYFFNAG
Sbjct:  203 KSRAAAPSLWILAPGVGFQGGDLEAAAKAGLRADGMGLLVPVSRGIARAEDPKAAAEKFRDLLNGVRKAAEDAEPAAKRAKTEGAEEALEPFQKQFFELALRCEVLKFGKFTLKSGRESPYFFNAG 328          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S2QUY9_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUY9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.800e-25
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   31 LFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR--VRK-KGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            +   GVG+QGGDLD AC+  LD +G  +L+PVSRGIS ++D    A E RD IN AR  VRK KG+ E  GE I  +Q +F+ FSLE  VL F   TLKSGRESPYFFNAG
Sbjct:  218 ILSPGVGAQGGDLDAACANGLDDEGGRMLIPVSRGISRSEDRGGKAREIRDNINMAREKVRKAKGI-EGEGEGIESFQSEFINFSLEMGVLKFGTFTLKSGRESPYFFNAG 327          
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A2D4BRP6_PYTIN (Orotidine 5'-phosphate decarboxylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRP6_PYTIN)

HSP 1 Score: 108 bits (271), Expect = 3.070e-25
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
            R R  T    +   G+G+QGG+L+EA SA L + GMG+L+P+SRGIS A DP  AA  FRD IN+ R  K      +   +   QR F++F+L + VL F   TLKSGR+SPYFFNAG
Sbjct:  362 RVRAVTPELWILAPGIGAQGGNLEEAVSAGLSADGMGMLIPISRGISKAADPKQAAENFRDAINAVRAAKVAAAGKSAGALGSTQRDFIKFALSFGVLKFGDFTLKSGRKSPYFFNAG 479          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0K1_9STRA1.880e-3053.28Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribo... [more]
A0A6T5PNF4_HETAK3.090e-3056.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LJU0_ECTSI3.830e-3052.99Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectoc... [more]
A0A7S1WFW6_ALECA5.470e-2750.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
K0T5J1_THAOC3.340e-2654.05Orotidine-5'-phosphate decarboxylase n=1 Tax=Thala... [more]
A0A7S4J266_9STRA3.560e-2654.47Orotidine-5'-phosphate decarboxylase n=1 Tax=Odont... [more]
A0A7S4MWX1_9STRA1.040e-2555.28Orotate phosphoribosyltransferase n=1 Tax=Odontell... [more]
A0A2R5GD95_9STRA1.970e-2548.41Orotate phosphoribosyltransferase n=1 Tax=Hondaea ... [more]
A0A7S2QUY9_9STRA2.800e-2557.66Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A2D4BRP6_PYTIN3.070e-2549.15Orotidine 5'-phosphate decarboxylase n=1 Tax=Pythi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147269contigH-elongata_contig147269:310..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1e-25
Seed eggNOG ortholog2880.D8LJU0
Preferred nameURA5
KEGG rclassRC00063,RC00409,RC00611
KEGG koko:K00762,ko:K01591,ko:K13421,ko:K15334
KEGG ReactionR00965,R01870,R08231
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00051
GOsGO:0003674,GO:0003824,GO:0004588,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019856,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' UMP biosynthetic process
EggNOG OGsCOG0461@1,KOG1377@2759
EC2.1.1.202,2.4.2.10,4.1.1.23
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionorotidine-5'-phosphate decarboxylase
Ec32 orthologEc-23_000110.1
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.2156303-CDS-H-elongata_contig147269:309..4561622929874.2156303-CDS-H-elongata_contig147269:309..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147269 310..456 -
1691679191.0200496-CDS-H-elongata_contig147269:309..4561691679191.0200496-CDS-H-elongata_contig147269:309..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147269 310..456 -
1622929874.2314157-CDS-H-elongata_contig147269:822..10291622929874.2314157-CDS-H-elongata_contig147269:822..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147269 823..1029 -
1691679191.0353885-CDS-H-elongata_contig147269:822..10291691679191.0353885-CDS-H-elongata_contig147269:822..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147269 823..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147269.3207.1prot_H-elongata_contig147269.3207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147269 310..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147269.3207.1

>prot_H-elongata_contig147269.3207.1 ID=prot_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMAD
DPAAAAAEFRDRINSARVRKKGVRETTGEMILPYQRKFVEFSLEYQVLGF
KLVTLKSGRESPYFFNAG
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mRNA from alignment at H-elongata_contig147269:310..1029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147269.3207.1 ID=mRNA_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig147269:310..1029- (Himanthalia elongata Himel1 dioecious)
CGACAACGGCTGACGACGACTGCTTTTTCCCTTTTCCCTGCAGGCGTGGG ATCCCAGGGCGGTGACCTGGACGAGGCGTGTTCGGCGGCGTTGGACTCCA AGGGGATGGGTCTTTTGGTCCCGGTGTCTCGGGGGATCAGTATGGCCGAT GATCCCGCGGCGGCAGCGGCAGAATTCCGAGACCGCATAAACTCGGCAAG GGTGCGGGTTCGGGTAAGGGCGAAAGAGTTAAGGCCGACATTTGTTTTTA AAAGTGGTCGTGACGCTCTCGCACCGCTTACTCGACCGGCAGCACAGTGG GCAGTGACATGGAGCGCTCGCCTTGTTCTCCCCATGCCTCGAAATTCGTG ACGTCACGTCCCGCTTTCGAAAGAGTCACACGTCTTTTTTCTCCTATGAC CACTCCTTCCCCCGTGGGTGGTTGATACAGTATAATATAATGTGTAATAA TGATAATATATAGATAATAATGATAATATATAGATAATAATGATATGATA TATAATGCTATGATATATAATGCTATATTTATGTCATGGCTGAGGCGAAC AGGAAAGGTGTACCTCTGGGGAGAAGAAAGGAGTGCGGGAAACGACTGGA GAGATGATTTTGCCATACCAACGAAAATTCGTGGAATTTTCGCTGGAGTA TCAAGTGCTGGGGTTCAAACTCGTCACGCTCAAGTCGGGTCGTGAATCTC CCTATTTCTTTAACGCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig147269:310..1029-

>mRNA_H-elongata_contig147269.3207.1 ID=mRNA_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig147269:310..1029- (Himanthalia elongata Himel1 dioecious)
CGACAACGGCTGACGACGACTGCTTTTTCCCTTTTCCCTGCAGGCGTGGG
ATCCCAGGGCGGTGACCTGGACGAGGCGTGTTCGGCGGCGTTGGACTCCA
AGGGGATGGGTCTTTTGGTCCCGGTGTCTCGGGGGATCAGTATGGCCGAT
GATCCCGCGGCGGCAGCGGCAGAATTCCGAGACCGCATAAACTCGGCAAG
GGTGCGGCGACAACGGCTGACGACGACTGCTTTTTCCCTTTTCCCTGCAG
GCGTGGGATCCCAGGGCGGTGACCTGGACGAGGCGTGTTCGGCGGCGTTG
GACTCCAAGGGGATGGGTCTTTTGGTCCCGGTGTCTCGGGGGATCAGTAT
GGCCGATGATCCCGCGGCGGCAGCGGCAGAATTCCGAGACCGCATAAACT
CGGCAAGGGTGCGGAAGAAAGGAGTGCGGGAAACGACTGGAGAGATGATT
TTGCCATACCAACGAAAATTCGTGGAATTTTCGCTGGAGTATCAAGTGCT
GGGGTTCAAACTCGTCACGCTCAAGTCGGGTCGTGAATCTCCCTATTTCT
TTAACGCCGGTAAGAAAGGAGTGCGGGAAACGACTGGAGAGATGATTTTG
CCATACCAACGAAAATTCGTGGAATTTTCGCTGGAGTATCAAGTGCTGGG
GTTCAAACTCGTCACGCTCAAGTCGGGTCGTGAATCTCCCTATTTCTTTA
ACGCCGGT
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