mRNA_H-elongata_contig103808.321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103808.321.1
Unique NamemRNA_H-elongata_contig103808.321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 5.160e-76
Identity = 122/299 (40.80%), Postives = 191/299 (63.88%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  L + H D  QAF  A L+E++++RL +GC + S K+V+  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKM +  V        D I+V+G  D C +  + L + FP K  GE   +  CA ERD + G + I+Q  + ++++ ++ + + S+IPASPG+D+GP+ + E+GG       R  +GS+MW+S   RPDI+ A+RA  RH+H P   HWKA+++I AY+  T+++G+ + RGSGL L+V+ D
Sbjct:   66 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPV---REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVD 360          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.620e-74
Identity = 119/299 (39.80%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S +I +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+  E + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPASPG+DLGP+ + E GG       R  +GS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct:  357 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPV---REAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 651          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 1.260e-73
Identity = 121/299 (40.47%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S KI +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct:  803 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 1097          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 2.290e-73
Identity = 121/299 (40.47%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S KI +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct: 1182 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 1476          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 2.320e-73
Identity = 121/299 (40.47%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S KI +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct: 1202 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 1496          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 2.360e-73
Identity = 121/299 (40.47%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S KI +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct: 1345 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 1639          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 4.810e-71
Identity = 119/299 (39.80%), Postives = 191/299 (63.88%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  + + H D  QA   A L+EE++++L +GC   S KIV+     Y LKQ+ R+W  L    L E  G E+ KA+ C+FRKMV+  V +++ ++ DDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP  E E GG       R  +GS+MWMS   RPD++ A+RA  RH+H+P   HW A+  +  Y+  T+++G+ + RGSGL L+V+ D
Sbjct:  689 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVEN-GFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGEWPV---REAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQRGSGLGLAVYVD 983          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 6.810e-71
Identity = 121/299 (40.47%), Postives = 191/299 (63.88%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA + ++   AN+  + + H D  QA   A L+EE++ RL +GC   S +IV+  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD + G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S   RPD++ A RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL  SV+ D
Sbjct:  912 ARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---RKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGPSVYVD 1206          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 2.680e-69
Identity = 116/299 (38.80%), Postives = 190/299 (63.55%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R VA+ F+Q+ ++    ++SP P+SA +K++   AN+  + + H D  QA+  A L+EE++++L +GC   S KI +  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKMV+  V +++ ++VDDI+V+G  + C++  + L ++FP K+ GE + +  CA ERD   G + I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E + GG       R  VGS+MW+S   RPD++ A+RA  RH+H P   HW A+ +I  Y+  T+++G+ + RGSGL L+V+ D
Sbjct:  394 ARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPV---REAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD 688          
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.470e-68
Identity = 122/300 (40.67%), Postives = 190/300 (63.33%), Query Frame = 1
Query:    1 SRMVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAFVQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLTEMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSELKERFPVKHQGELKMYTDCAFERDWKNGI-IEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALRACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD 897
            +R+VA+ F+Q+PNVDY  ++SP P+SA +K++   AN+  L + H D  QAF  A L+E++++RL +GC + S K+V+  +  Y LKQ+GR+W       L E  G EQ KA+PC+FRKM +  V        D I+V+G  D C +  + L + FP K  GE   +  CA ERD + G+ + I+Q  + + ++ ++ + + S+IPASPG+D+GP+ + E+GG       R  +GS+MW+S   RPDI+ A+RA  RH+H P   HWKA+++I AY+  T+++G+ + RGSGL L V+ D
Sbjct: 1455 ARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPV---REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVD 1749          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103808.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE5.160e-7640.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.620e-7439.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.260e-7340.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.290e-7340.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.320e-7340.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.360e-7340.47Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JJY0_9PHAE4.810e-7139.80CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JQW4_9PHAE6.810e-7140.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.680e-6938.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE1.470e-6840.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103808contigH-elongata_contig103808:67..1360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score144.8
Seed ortholog evalue6.4e-32
Seed eggNOG ortholog946362.XP_004989293.1
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1294
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103808.321.1prot_H-elongata_contig103808.321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103808 461..1354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.7771325-UTR-H-elongata_contig103808:66..4601622929572.7771325-UTR-H-elongata_contig103808:66..460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103808 67..460 -
1691679075.7607858-UTR-H-elongata_contig103808:66..4601691679075.7607858-UTR-H-elongata_contig103808:66..460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103808 67..460 -
1622929572.8037555-UTR-H-elongata_contig103808:1354..13601622929572.8037555-UTR-H-elongata_contig103808:1354..1360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103808 1355..1360 -
1691679075.7772257-UTR-H-elongata_contig103808:1354..13601691679075.7772257-UTR-H-elongata_contig103808:1354..1360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103808 1355..1360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.789119-CDS-H-elongata_contig103808:460..13541622929572.789119-CDS-H-elongata_contig103808:460..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103808 461..1354 -
1691679075.7695696-CDS-H-elongata_contig103808:460..13541691679075.7695696-CDS-H-elongata_contig103808:460..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103808 461..1354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103808.321.1

>prot_H-elongata_contig103808.321.1 ID=prot_H-elongata_contig103808.321.1|Name=mRNA_H-elongata_contig103808.321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MVAKLFTQMPNVDYHETTSPTPASAPVKIIAVAANKLRLLVFHLDESQAF
VQAPLEEEIYMRLLSGCSKLSGKIVRLLKCQYDLKQAGREWHLLLVRWLT
EMMGMEQSKAEPCIFRKMVNGKVSLMVGVHVDDIIVSGESDVCDDFFSEL
KERFPVKHQGELKMYTDCAFERDWKNGIIEINQKTFAENMITQYGITAVS
NIPASPGMDLGPRVEGETGGNEEFGDYRAIVGSLMWMSVMKRPDIANALR
ACVRHSHNPTAWHWKALLQIAAYINATKEIGLRFVRGSGLRLSVFAD*
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mRNA from alignment at H-elongata_contig103808:67..1360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103808.321.1 ID=mRNA_H-elongata_contig103808.321.1|Name=mRNA_H-elongata_contig103808.321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1294bp|location=Sequence derived from alignment at H-elongata_contig103808:67..1360- (Himanthalia elongata Himel1 dioecious)
TCACGGATGGTTGCGAAATTGTTTACTCAGATGCCGAACGTGGATTATCA TGAGACAACATCTCCCACACCCGCATCGGCCCCTGTGAAGATTATTGCAG TTGCTGCGAACAAGCTTCGTTTGCTGGTTTTCCATTTGGATGAATCTCAG GCATTCGTGCAAGCACCTTTGGAAGAGGAGATATACATGCGTCTTCTCTC GGGGTGTAGTAAGCTTTCGGGTAAGATCGTTAGGCTTCTCAAATGTCAGT ATGATCTGAAGCAAGCTGGTAGAGAATGGCATTTGTTACTCGTAAGGTGG TTGACTGAAATGATGGGGATGGAACAAAGTAAGGCAGAGCCGTGTATTTT TCGTAAGATGGTCAATGGCAAGGTTTCACTGATGGTTGGAGTACATGTCG ATGATATAATTGTATCGGGAGAGAGCGATGTTTGTGATGACTTCTTTAGT GAGTTGAAAGAGAGATTTCCTGTGAAACACCAAGGGGAGCTGAAGATGTA CACCGACTGTGCATTCGAACGTGATTGGAAGAACGGGATCATAGAAATAA ACCAAAAGACGTTTGCGGAAAATATGATTACGCAGTACGGAATCACCGCT GTTTCCAATATTCCAGCGAGTCCTGGAATGGATCTCGGTCCTAGAGTTGA AGGGGAAACTGGCGGCAATGAAGAGTTTGGGGATTACCGTGCCATTGTAG GGAGCCTGATGTGGATGTCGGTAATGAAGAGACCGGACATTGCGAATGCT CTTCGAGCTTGTGTGCGTCATAGCCATAACCCTACCGCGTGGCATTGGAA GGCACTTCTGCAAATAGCCGCGTACATAAATGCAACGAAAGAGATTGGTT TACGGTTCGTGCGTGGTTCTGGTCTGAGACTTTCTGTGTTTGCAGACTGA TTACGCGGCGGCATCGAATGATAGGCGGTCCGTATCTGGTGTAGCAGTAC TTCTGGGTGACACAGCAATAAGCTGGAAAAATAGTACGCAGAAATGCGTG AAGACTGCAACCTGTGAGGCTGAGTATGTTGCCCTTTGTGATGCAGCAAA AGAGGCGATATTTGACAGAGCGGTTTTGGTTTTTCAGCAGCCGCAACTGG CCGGGATGTGTGTTGATATTTTTGGTGACAATGAGGGTGCGATGGCGATC GCAAACAACCCAAGCGGTGCGTCGAGAAGCAAGCATATTGATGTAAAGTT CCACTTTATTCAGGGACTCGTGCGTTCAGGAGATATTCGGATCCTTCATG TAGGAACGAAGGACCAACACGCGGACAATCTAACTAAGGCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig103808:67..1360-

>mRNA_H-elongata_contig103808.321.1 ID=mRNA_H-elongata_contig103808.321.1|Name=mRNA_H-elongata_contig103808.321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig103808:67..1360- (Himanthalia elongata Himel1 dioecious)
ATGGTTGCGAAATTGTTTACTCAGATGCCGAACGTGGATTATCATGAGAC
AACATCTCCCACACCCGCATCGGCCCCTGTGAAGATTATTGCAGTTGCTG
CGAACAAGCTTCGTTTGCTGGTTTTCCATTTGGATGAATCTCAGGCATTC
GTGCAAGCACCTTTGGAAGAGGAGATATACATGCGTCTTCTCTCGGGGTG
TAGTAAGCTTTCGGGTAAGATCGTTAGGCTTCTCAAATGTCAGTATGATC
TGAAGCAAGCTGGTAGAGAATGGCATTTGTTACTCGTAAGGTGGTTGACT
GAAATGATGGGGATGGAACAAAGTAAGGCAGAGCCGTGTATTTTTCGTAA
GATGGTCAATGGCAAGGTTTCACTGATGGTTGGAGTACATGTCGATGATA
TAATTGTATCGGGAGAGAGCGATGTTTGTGATGACTTCTTTAGTGAGTTG
AAAGAGAGATTTCCTGTGAAACACCAAGGGGAGCTGAAGATGTACACCGA
CTGTGCATTCGAACGTGATTGGAAGAACGGGATCATAGAAATAAACCAAA
AGACGTTTGCGGAAAATATGATTACGCAGTACGGAATCACCGCTGTTTCC
AATATTCCAGCGAGTCCTGGAATGGATCTCGGTCCTAGAGTTGAAGGGGA
AACTGGCGGCAATGAAGAGTTTGGGGATTACCGTGCCATTGTAGGGAGCC
TGATGTGGATGTCGGTAATGAAGAGACCGGACATTGCGAATGCTCTTCGA
GCTTGTGTGCGTCATAGCCATAACCCTACCGCGTGGCATTGGAAGGCACT
TCTGCAAATAGCCGCGTACATAAATGCAACGAAAGAGATTGGTTTACGGT
TCGTGCGTGGTTCTGGTCTGAGACTTTCTGTGTTTGCAGACTGAATGGTT
GCGAAATTGTTTACTCAGATGCCGAACGTGGATTATCATGAGACAACATC
TCCCACACCCGCATCGGCCCCTGTGAAGATTATTGCAGTTGCTGCGAACA
AGCTTCGTTTGCTGGTTTTCCATTTGGATGAATCTCAGGCATTCGTGCAA
GCACCTTTGGAAGAGGAGATATACATGCGTCTTCTCTCGGGGTGTAGTAA
GCTTTCGGGTAAGATCGTTAGGCTTCTCAAATGTCAGTATGATCTGAAGC
AAGCTGGTAGAGAATGGCATTTGTTACTCGTAAGGTGGTTGACTGAAATG
ATGGGGATGGAACAAAGTAAGGCAGAGCCGTGTATTTTTCGTAAGATGGT
CAATGGCAAGGTTTCACTGATGGTTGGAGTACATGTCGATGATATAATTG
TATCGGGAGAGAGCGATGTTTGTGATGACTTCTTTAGTGAGTTGAAAGAG
AGATTTCCTGTGAAACACCAAGGGGAGCTGAAGATGTACACCGACTGTGC
ATTCGAACGTGATTGGAAGAACGGGATCATAGAAATAAACCAAAAGACGT
TTGCGGAAAATATGATTACGCAGTACGGAATCACCGCTGTTTCCAATATT
CCAGCGAGTCCTGGAATGGATCTCGGTCCTAGAGTTGAAGGGGAAACTGG
CGGCAATGAAGAGTTTGGGGATTACCGTGCCATTGTAGGGAGCCTGATGT
GGATGTCGGTAATGAAGAGACCGGACATTGCGAATGCTCTTCGAGCTTGT
GTGCGTCATAGCCATAACCCTACCGCGTGGCATTGGAAGGCACTTCTGCA
AATAGCCGCGTACATAAATGCAACGAAAGAGATTGGTTTACGGTTCGTGC
GTGGTTCTGGTCTGAGACTTTCTGTGTTTGCAGACTGA
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