prot_H-elongata_contig147242.3203.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig147242.3203.1
Unique Name	prot_H-elongata_contig147242.3203.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	254

Homology

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BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.830e-55
Identity = 105/265 (39.62%), Postives = 161/265 (60.75%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            +VDSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  421 LVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684

[Close]

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 8.000e-55
Identity = 105/265 (39.62%), Postives = 161/265 (60.75%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            +VDSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  421 LVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684

[Close]

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 8.720e-51
Identity = 102/266 (38.35%), Postives = 156/266 (58.65%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQ-ALQSLQLF 253
            + DSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D  GPFT   +GG+KY +K  D++TKW  V L+  K   ++  L+LF
Sbjct:  326 LEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELF 590

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BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 4.250e-49
Identity = 98/265 (36.98%), Postives = 146/265 (55.09%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYG------AKELAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            +VDSGA+ NY D  +   L+  ++D   L  P  I+ AG  +L G   G + G VT+DNG+   V   +++VPG+G NLFSV  A  KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G      A +     V +A +WHRR+G ++ +SL +LRK+    + + G V DC VC +GK+ Q  H K A + V RPFQ      + PFTP  +GG+K  +K  D+ TKW  + L+  K  ++ SL LF
Sbjct:  600 VVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATKFVDQQTKWAKIVLMKDKTCSVDSLALF 864

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BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.170e-47
Identity = 97/252 (38.49%), Postives = 142/252 (56.35%), Query Frame = 0

Query:    4 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYGAKEL--AMNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 243
            SGA+ NY D  +   L+  ++D   L  P  I+ AG  +L G   G + G VT+DNG+   V   +++VPG+G NLFSV  A  KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G   L  A +A+A    +A +WHRR+GH++ ++L +LRK    G+ + G V  C VC +GK+ Q  H K A + V RPFQ    D + PFTP A+GG KY +K  D+ TKW  + L+  K
Sbjct:  350 SGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATKFVDQQTKWAEIVLMKDK 598

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BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 9.460e-45
Identity = 102/272 (37.50%), Postives = 146/272 (53.68%), Query Frame = 0

Query:    4 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLE-------GFNVTVPLRSESGNLYSFVLDLSADGYGAK----ELAMNAVANAQV----------WHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFV 254
            SGASG+Y D  ++ +L++ L D+  + TP KI+ AGG  L GT+ G++     ++ G+   VR    VVPG+GR+LFS  TA KKG  TI   + PR+E       G  + + LR E G LY   + L  +    +    E  MN   N+ V          WHRRL H H   +    +   TG+     +  C+ C + K+ Q  H KTA H   +P Q  Y DL+GP +P A GG+ YVSK TDEY++   VYL+ TKD+A+ +L+ F+
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFI 580

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BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.530e-42
Identity = 91/283 (32.16%), Postives = 145/283 (51.24%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMN------------------------------AVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            ++D+GAS N  DD +I  LK  +++  +LA P+ +   GG  L+G A G++   V + NG++  V +  LVVPG+GRN+FS     K G+  + +  NP L     T+PL+ +  ++    +D+       +  A                                A  NA  WHR L HL+ +S+ +LRK+   G+ F  +++ CD+CA+ K++QLAH +  N +   P QL Y D MG  TP+A GG+ YVSK TD Y+    +YLL    + +++L  +
Sbjct:  137 LIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAY 419

[Close]

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.570e-41
Identity = 100/273 (36.63%), Postives = 144/273 (52.75%), Query Frame = 0

Query:    2 VDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            V++GAS    D+ +I +    L DY Q  +P+ +  AGG  L GTA G+L   V ++ G Q+ VRI   +VPG+GRN+FS  +  KKG+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +A  WHRRLGHL+A+SL ILRK  GTG+ +  ++S C VC + K +Q  H K +  +++RP QL     MGP  P A    G + YV KITD+YTK   VYLL  K    +++  +
Sbjct:  175 VNTGASETMLDNRLIPD--GNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTY 445

[Close]

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.060e-41
Identity = 99/274 (36.13%), Postives = 145/274 (52.92%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            +VD+GAS   FD+ +I +    L DY Q  +P+ +  AG   L GTA G+L   V ++ G Q+ VRI  L+VPG+GRN+FS  +  K+G+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +A  WHRRLGHL+A+SL ILRK  GT + +  ++S C VC + K +Q  H K +  +++RP QL   D MGP  P A    G + Y  K+TD+YTK   VYLL  K    +++  +
Sbjct:  209 LVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTY 480

[Close]

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.190e-39
Identity = 109/386 (28.24%), Postives = 160/386 (41.45%), Query Frame = 0

Query:    1 MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVP--------------------------------------LRSESGNLY--------------------------SFVLDLSA----DGYGAKELAMNA-----------------------------------------------------------------VANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 253
            ++DSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F   NPRLE  N  VP                                      LR E+ +L+                            V D SA     G G    ++ A                                                                 V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  421 LMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPGNPRLESANAVVPMKIQGVNNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGHVQDCSACPLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 806

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot

BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J842_9PHAE	4.830e-55	39.62	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJN3_9PHAE	8.000e-55	39.62	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JYB5_9PHAE	8.720e-51	38.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVF6_9PHAE	4.250e-49	36.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9Q7_9PHAE	5.170e-47	38.49	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5KY84_9PHAE	9.460e-45	37.50	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYD3_9PHAE	4.530e-42	32.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMG5_9PHAE	5.570e-41	36.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVF6_9PHAE	9.060e-41	36.13	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJH6_9PHAE	1.190e-39	28.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 192..254 e-value: 2.5E-7 score: 32.1
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 138..185 e-value: 6.2E-7 score: 29.2
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 57..243
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 57..243
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 197..246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig147242	contig	H-elongata_contig147242:829..1590 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig147242.3203.1	mRNA_H-elongata_contig147242.3203.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig147242 802..1590 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig147242.3203.1 ID=prot_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGV
LQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPR
LEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMNAVANAQVWHRRLG
HLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNR
PFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSL
QLFV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf