mRNA_H-elongata_contig147242.3203.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 200 bits (508), Expect = 8.990e-55 Identity = 105/266 (39.47%), Postives = 162/266 (60.90%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
++VDSGA+ NY D A+ ++ ++D L P I+TAG +L+G GVL G VT+D+G V +++VPG+G NLFSV A G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V A +WHRR+GH++ +SL +LR++ +GI + G V DC C +GK+ Q H K A + V+ PFQL + D +GPFTP A+GG+KY +K D++TKW V L+ K ++ +L+LF
Sbjct: 420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 199 bits (506), Expect = 1.490e-54 Identity = 105/266 (39.47%), Postives = 162/266 (60.90%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
++VDSGA+ NY D A+ ++ ++D L P I+TAG +L+G GVL G VT+D+G V +++VPG+G NLFSV A G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V A +WHRR+GH++ +SL +LR++ +GI + G V DC C +GK+ Q H K A + V+ PFQL + D +GPFTP A+GG+KY +K D++TKW V L+ K ++ +L+LF
Sbjct: 420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.610e-50 Identity = 102/267 (38.20%), Postives = 157/267 (58.80%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQ-ALQSLQLF 786
++ DSGA+ NY D A+ ++ ++D L P I+TAG +L+G GVL G VT+D+G V +++VPG+G NLFSV A G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V A +WHRR+GH++ +SL +LR++ +GI + G V DC C +GK+ Q H K A + V+ PFQL + D GPFT +GG+KY +K D++TKW V L+ K ++ L+LF
Sbjct: 325 MLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELF 590
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE) HSP 1 Score: 182 bits (462), Expect = 7.860e-49 Identity = 98/266 (36.84%), Postives = 147/266 (55.26%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYG------AKELAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
++VDSGA+ NY D + L+ ++D L P I+ AG +L G G + G VT+DNG+ V +++VPG+G NLFSV A KG+ T+F +NPRLE +V P+++ +YS + L + G A + V +A +WHRR+G ++ +SL +LRK+ + + G V DC VC +GK+ Q H K A + V RPFQ + PFTP +GG+K +K D+ TKW + L+ K ++ SL LF
Sbjct: 599 MVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATKFVDQQTKWAKIVLMKDKTCSVDSLALF 864
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE) HSP 1 Score: 176 bits (447), Expect = 6.950e-47 Identity = 97/252 (38.49%), Postives = 142/252 (56.35%), Query Frame = 1
Query: 37 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYGAKEL--AMNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 756
SGA+ NY D + L+ ++D L P I+ AG +L G G + G VT+DNG+ V +++VPG+G NLFSV A KG+ T+F +NPRLE +V P+++ +YS + L + G L A +A+A +A +WHRR+GH++ ++L +LRK G+ + G V C VC +GK+ Q H K A + V RPFQ D + PFTP A+GG KY +K D+ TKW + L+ K
Sbjct: 350 SGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATKFVDQQTKWAEIVLMKDK 598
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.270e-44 Identity = 102/272 (37.50%), Postives = 146/272 (53.68%), Query Frame = 1
Query: 37 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLE-------GFNVTVPLRSESGNLYSFVLDLSADGYGAK----ELAMNAVANAQV----------WHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFV 789
SGASG+Y D ++ +L++ L D+ + TP KI+ AGG L GT+ G++ ++ G+ VR VVPG+GR+LFS TA KKG TI + PR+E G + + LR E G LY + L + + E MN N+ V WHRRL H H + + TG+ + C+ C + K+ Q H KTA H +P Q Y DL+GP +P A GG+ YVSK TDEY++ VYL+ TKD+A+ +L+ F+
Sbjct: 311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFI 580
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.730e-42 Identity = 92/286 (32.17%), Postives = 148/286 (51.75%), Query Frame = 1
Query: 19 ATVMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMN------------------------------AVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
A++++D+GAS N DD +I LK +++ +LA P+ + GG L+G A G++ V + NG++ V + LVVPG+GRN+FS K G+ + + NP L T+PL+ + ++ +D+ + A A NA WHR L HL+ +S+ +LRK+ G+ F +++ CD+CA+ K++QLAH + N + P QL Y D MG TP+A GG+ YVSK TD Y+ +YLL + +++L +
Sbjct: 134 ASLLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAY 419
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.020e-40 Identity = 100/273 (36.63%), Postives = 144/273 (52.75%), Query Frame = 1
Query: 31 VDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
V++GAS D+ +I + L DY Q +P+ + AGG L GTA G+L V ++ G Q+ VRI +VPG+GRN+FS + KKG+ + + P L +PL + + LD++ + G K L NAV +A WHRRLGHL+A+SL ILRK GTG+ + ++S C VC + K +Q H K + +++RP QL MGP P A G + YV KITD+YTK VYLL K +++ +
Sbjct: 175 VNTGASETMLDNRLIPD--GNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTY 445
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.660e-40 Identity = 99/275 (36.00%), Postives = 146/275 (53.09%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
++VD+GAS FD+ +I + L DY Q +P+ + AG L GTA G+L V ++ G Q+ VRI L+VPG+GRN+FS + K+G+ + + P L +PL + + LD++ + G K L NAV +A WHRRLGHL+A+SL ILRK GT + + ++S C VC + K +Q H K + +++RP QL D MGP P A G + Y K+TD+YTK VYLL K +++ +
Sbjct: 208 LLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTY 480
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.160e-39 Identity = 109/387 (28.17%), Postives = 161/387 (41.60%), Query Frame = 1
Query: 25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVP--------------------------------------LRSESGNLY--------------------------SFVLDLSA----DGYGAKELAMNA-----------------------------------------------------------------VANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
+++DSGA+ NY D A+ ++ ++D L P I+TAG +L+G GVL G VT+D+G V +++VPG+G NLFSV A G+ ++F NPRLE N VP LR E+ +L+ V D SA G G ++ A V A +WHRR+GH++ +SL +LR++ +GI + G V DC C +GK+ Q H K A + V+ PFQL + D +GPFTP A+GG+KY +K D++TKW V L+ K ++ +L+LF
Sbjct: 420 MLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPGNPRLESANAVVPMKIQGVNNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGHVQDCSACPLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 806 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig147242.3203.1 >prot_H-elongata_contig147242.3203.1 ID=prot_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVback to top mRNA from alignment at H-elongata_contig147242:802..1590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig147242.3203.1 ID=mRNA_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig147242:802..1590+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig147242:802..1590+ >mRNA_H-elongata_contig147242.3203.1 ID=mRNA_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig147242:802..1590+ (Himanthalia elongata Himel1 dioecious)back to top |