mRNA_H-elongata_contig14721.3202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14721.3202.1
Unique NamemRNA_H-elongata_contig14721.3202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A433PUW4_9FUNG (TPR repeat-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PUW4_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 6.120e-11
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 GQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            G+YD A PLY+RALEIREK+LG+EHPD A SLN+LA +  +Q
Sbjct:   21 GKYDMAAPLYERALEIREKELGSEHPDTATSLNNLALVYNNQ 62
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BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A6M0ALV0_9CYAN (Tetratricopeptide repeat protein n=1 Tax=Moorena sp. SIO4G2 TaxID=2607820 RepID=A0A6M0ALV0_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.990e-10
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            QG+Y +A+PL +RALEIR++ LG EHPDVAISLN+LA   +SQ
Sbjct:   30 QGKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQ 72
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A1U7N198_9CYAN (Uncharacterized protein n=3 Tax=Moorena TaxID=1155738 RepID=A0A1U7N198_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 8.320e-10
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            QG+Y +A+PL +RALEIR++ LG EHPDVAISLN+LA   +SQ
Sbjct:   74 QGKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQ 116
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A3M0WY91_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M0WY91_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARL 117
            QG YD A PLYKR+LEI EK LG EHPDVA+SLN+LA L
Sbjct:    5 QGLYDKAEPLYKRSLEIYEKTLGQEHPDVALSLNNLALL 43
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A1D8TRT8_9CYAN (Uncharacterized protein n=1 Tax=Moorena producens PAL-8-15-08-1 TaxID=1458985 RepID=A0A1D8TRT8_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.970e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            QG+Y +A+PL +RALEIR++ LG EHPDVA SLN+LA L +SQ
Sbjct:   69 QGKYSEAIPLAERALEIRQEILGEEHPDVAESLNNLALLYKSQ 111
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A150RT80_SORCE (CHAT domain-containing protein (Fragment) n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RT80_SORCE)

HSP 1 Score: 60.5 bits (145), Expect = 1.230e-8
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 GQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            G+YD+A+PL +RAL++REK LG EHP VAI+LN LA LLQ++
Sbjct:    7 GRYDEAIPLARRALDLREKALGPEHPGVAINLNSLAGLLQTK 48
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: UPI001FE419B8 (tetratricopeptide repeat protein n=1 Tax=Sodalinema gerasimenkoae TaxID=2862348 RepID=UPI001FE419B8)

HSP 1 Score: 60.1 bits (144), Expect = 1.650e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            +G+Y+DAMPL ++ALEIRE  LG  HPDVA SLN+LARL  +Q
Sbjct:  180 EGRYEDAMPLAQQALEIRETTLGESHPDVAQSLNNLARLYWNQ 222
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: UPI001F556F41 (tetratricopeptide repeat-containing protein n=1 Tax=Calothrix sp. FACHB-156 TaxID=2692779 RepID=UPI001F556F41)

HSP 1 Score: 59.7 bits (143), Expect = 1.860e-8
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQS 126
            QG+Y +A+PL +RAL IREK LG EHPDVA +LN+LA L QS
Sbjct:  103 QGKYSEAIPLAERALAIREKVLGKEHPDVATNLNNLAALYQS 144
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: UPI000A03459B (CHAT domain-containing protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI000A03459B)

HSP 1 Score: 59.7 bits (143), Expect = 2.240e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            QG+YD+A PLY++ALE+R++ LG +HP VA SLN+LA L +SQ
Sbjct:    2 QGRYDEAEPLYRQALEMRKRLLGEQHPSVASSLNNLAALYESQ 44
[Close]
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Match: A0A0J9EWN6_9CYAN (Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0J9EWN6_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.500e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGQYDDAMPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQ 129
            QG+Y++A PLY+R+L IREK LG  HPDVA+SLN+LA    SQ
Sbjct:   19 QGRYNEAEPLYQRSLAIREKVLGENHPDVALSLNNLASFYLSQ 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14721.3202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433PUW4_9FUNG6.120e-1166.67TPR repeat-containing protein (Fragment) n=1 Tax=J... [more]
A0A6M0ALV0_9CYAN2.990e-1065.12Tetratricopeptide repeat protein n=1 Tax=Moorena s... [more]
A0A1U7N198_9CYAN8.320e-1065.12Uncharacterized protein n=3 Tax=Moorena TaxID=1155... [more]
A0A3M0WY91_9BACT1.020e-974.36Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A1D8TRT8_9CYAN2.970e-965.12Uncharacterized protein n=1 Tax=Moorena producens ... [more]
A0A150RT80_SORCE1.230e-864.29CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001FE419B81.650e-865.12tetratricopeptide repeat protein n=1 Tax=Sodalinem... [more]
UPI001F556F411.860e-866.67tetratricopeptide repeat-containing protein n=1 Ta... [more]
UPI000A03459B2.240e-860.47CHAT domain-containing protein n=1 Tax=Geitlerinem... [more]
A0A0J9EWN6_9CYAN2.500e-862.79Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14721contigH-elongata_contig14721:7058..7633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14721.3202.1prot_H-elongata_contig14721.3202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14721 7058..7612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.7158623-CDS-H-elongata_contig14721:7057..72041622929873.7158623-CDS-H-elongata_contig14721:7057..7204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 7058..7204 -
1691679190.809951-CDS-H-elongata_contig14721:7057..72041691679190.809951-CDS-H-elongata_contig14721:7057..7204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 7058..7204 -
1622929873.7284708-CDS-H-elongata_contig14721:7504..76121622929873.7284708-CDS-H-elongata_contig14721:7504..7612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 7505..7612 -
1691679190.8176277-CDS-H-elongata_contig14721:7504..76121691679190.8176277-CDS-H-elongata_contig14721:7504..7612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 7505..7612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.7436883-UTR-H-elongata_contig14721:7612..76331622929873.7436883-UTR-H-elongata_contig14721:7612..7633Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 7613..7633 -
1691679190.8251343-UTR-H-elongata_contig14721:7612..76331691679190.8251343-UTR-H-elongata_contig14721:7612..7633Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 7613..7633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14721.3202.1

>prot_H-elongata_contig14721.3202.1 ID=prot_H-elongata_contig14721.3202.1|Name=mRNA_H-elongata_contig14721.3202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MPLYKRALEIREKKLGNEHPDVAISLNDLARLLQSQGDFVDAESFYERAL
DIRKTNLGAEHPDVAKSLNNLANLLREMVMIEGY*
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mRNA from alignment at H-elongata_contig14721:7058..7633-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14721.3202.1 ID=mRNA_H-elongata_contig14721.3202.1|Name=mRNA_H-elongata_contig14721.3202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig14721:7058..7633- (Himanthalia elongata Himel1 dioecious)
CAGGGCCAGTATGACGATGCCATGCCACTCTACAAGCGCGCCTTGGAAAT
CCGCGAGAAAAAGTTAGGCAATGAACACCCGGATGTTGCTATAAGTCTAA
ACGATCTGGCGAGATTGTTACAGTCACAGGTGAGGTTCATGAGTATCCCT
TCAATAGATATTTGACCAACTTCGAGGCAACGTATTTTTTGTAAATAATT
ATTTTCATTATAATGGCGATCCTCAGTAAGAAGGGCGGATGTTTGTGCCG
AGCAATCCAAAAGCATGACGTTTCTACTCCTCCTGCTCTTTGAACTGATG
GGATAGGTCTGGGGAAAACTCTACAGCTATTACATACATTAATGCGGCTA
TCCTGTATTGATTCGGATTACGCGGGCCGTCGTCAATTGTTCTAACAACA
TCTACGCCCCGTTTTCCTTCATATTTCAGGGAGATTTTGTCGACGCGGAG
TCTTTCTATGAGCGTGCCCTCGATATCCGCAAAACAAACCTAGGCGCTGA
ACACCCGGACGTGGCAAAGAGTCTAAACAACCTGGCAAATCTATTAAGAG
AAATGGTGATGATCGAAGGGTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14721:7058..7633-

>mRNA_H-elongata_contig14721.3202.1 ID=mRNA_H-elongata_contig14721.3202.1|Name=mRNA_H-elongata_contig14721.3202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig14721:7058..7633- (Himanthalia elongata Himel1 dioecious)
ATGCCACTCTACAAGCGCGCCTTGGAAATCCGCGAGAAAAAGTTAGGCAA
TGAACACCCGGATGTTGCTATAAGTCTAAACGATCTGGCGAGATTGTTAC
AGTCACAGATGCCACTCTACAAGCGCGCCTTGGAAATCCGCGAGAAAAAG
TTAGGCAATGAACACCCGGATGTTGCTATAAGTCTAAACGATCTGGCGAG
ATTGTTACAGTCACAGGGAGATTTTGTCGACGCGGAGTCTTTCTATGAGC
GTGCCCTCGATATCCGCAAAACAAACCTAGGCGCTGAACACCCGGACGTG
GCAAAGAGTCTAAACAACCTGGCAAATCTATTAAGAGAAATGGTGATGAT
CGAAGGGTATTAAGGAGATTTTGTCGACGCGGAGTCTTTCTATGAGCGTG
CCCTCGATATCCGCAAAACAAACCTAGGCGCTGAACACCCGGACGTGGCA
AAGAGTCTAAACAACCTGGCAAATCTATTAAGAGAAATGGTGATGATCGA
AGGGTATTAA
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