mRNA_H-elongata_contig147201.3200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147201.3200.1
Unique NamemRNA_H-elongata_contig147201.3200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: D7FI93_ECTSI (DNA replication licensing factor MCM7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI93_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.070e-41
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQDAKNGD 229
            ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEP+VPEELTSYIVEAYVALRA+SGQDAKNGD
Sbjct:  533 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPHVPEELTSYIVEAYVALRAQSGQDAKNGD 608          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A835YVG8_9STRA (DNA replication licensing factor MCM7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.510e-22
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALR 196
            ADME+D ALARHVT+VHQ   NPELDF P DP F+K YISQAR +EPY+P EL  Y+VEAYV LR
Sbjct:  533 ADMETDTALARHVTYVHQHGANPELDFVPLDPTFIKHYISQARTVEPYIPAELAPYVVEAYVELR 597          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A812Y919_9DINO (DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Y919_9DINO)

HSP 1 Score: 92.4 bits (228), Expect = 5.570e-21
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 2
Query:    5 DMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQDAKNG 226
            D ++D+ALARH+T+VHQ++ +PELDF+P      ++++ +AR LEPYVP+ LTSYIVE YVALR E  + A +G
Sbjct:   83 DADNDLALARHITYVHQYEHHPELDFDPVASGVFRVFVEKARQLEPYVPKSLTSYIVEQYVALRTEEAKQASSG 156          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A7J7IG98_9RHOD (DNA helicase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG98_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 1.510e-18
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    5 DMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQ 211
            D + D+ALARHVT+VH+  + P+L F+P  P  L+ YI+QAR   P VP ELTSYIVE YVALRA+  Q
Sbjct:   20 DQDKDMALARHVTYVHRTGEAPDLGFQPVSPDLLRAYIAQARQSTPVVPSELTSYIVEHYVALRADDTQ 88          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: M1V6T0_CYAM1 (DNA replication licensing factor MCM7 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6T0_CYAM1)

HSP 1 Score: 83.6 bits (205), Expect = 4.850e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    5 DMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQ 211
            D + D+ALARHVT+VH+  + PEL FEP  P  L+ Y++QAR   P VP ELT+Y+VE YVALRA+  Q
Sbjct:  628 DQDKDLALARHVTYVHRTGEAPELGFEPASPDLLRAYVAQARQCVPVVPSELTAYVVEHYVALRADDKQ 696          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A8K1FIE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIE6_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-16
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQD 214
            A+ E D ALARHVT+VH+F KNP++ FEP  P+ L+ +I+ A+  +P +PE L SYIVEAYV+LR +   +
Sbjct:  580 ANYEKDEALARHVTYVHRFSKNPDMTFEPVRPEVLRYFIAIAKQYQPTIPEHLCSYIVEAYVSLRQQDANE 650          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A7S0JYJ4_CAFRO (DNA replication licensing factor MCM7 n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JYJ4_CAFRO)

HSP 1 Score: 81.6 bits (200), Expect = 2.300e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 2
Query:    5 DMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQDAKNG 226
            DM++D+ALA+H+T+VHQ  ++P LDFEP +P  L+ Y+  AR+LEP VP  L  +I EAYV +R      A  G
Sbjct:  621 DMDNDLALAKHITYVHQNAQHPPLDFEPVEPSVLRSYVQAARVLEPAVPRSLQGFIAEAYVGMRQREAAGAAKG 694          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A2K1JVY1_PHYPA (DNA replication licensing factor MCM7 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JVY1_PHYPA)

HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALRAESGQ 211
            ADM+SD+A+ARHV  VHQ    P LDF P D   L+ YIS AR + PYVP +LT Y+  AY ALR E  Q
Sbjct:  521 ADMDSDLAMARHVLHVHQHSAPPSLDFTPLDSSTLRAYISSARQVIPYVPRDLTEYMASAYSALRQEEAQ 590          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A2D4CAX7_PYTIN (DNA replication licensing factor MCM7 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAX7_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALR 196
            A+ E D ALARHVT+VH+F KNPE+ FEP  P+ L+ +I+ A+  +P +PE L SYIVEAYV+LR
Sbjct:  498 ANYEKDEALARHVTYVHRFCKNPEIGFEPVRPEVLRYFIAIAKQYQPSIPEHLCSYIVEAYVSLR 562          
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Match: A0A2D4BFW7_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFW7_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 3.140e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:    2 ADMESDIALARHVTFVHQFKKNPELDFEPFDPKFLKLYISQARMLEPYVPEELTSYIVEAYVALR 196
            A+ E D ALARHVT+VH+F KNPE+ FEP  P+ L+ +I+ A+  +P +PE L SYIVEAYV+LR
Sbjct:  583 ANYEKDEALARHVTYVHRFCKNPEIGFEPVRPEVLRYFIAIAKQYQPSIPEHLCSYIVEAYVSLR 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147201.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI93_ECTSI4.070e-4197.37DNA replication licensing factor MCM7 n=2 Tax=Ecto... [more]
A0A835YVG8_9STRA3.510e-2270.77DNA replication licensing factor MCM7 n=1 Tax=Trib... [more]
A0A812Y919_9DINO5.570e-2154.05DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7J7IG98_9RHOD1.510e-1857.97DNA helicase n=1 Tax=Cyanidiococcus yangmingshanen... [more]
M1V6T0_CYAM14.850e-1756.52DNA replication licensing factor MCM7 n=1 Tax=Cyan... [more]
A0A8K1FIE6_PYTOL1.690e-1652.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0JYJ4_CAFRO2.300e-1648.65DNA replication licensing factor MCM7 n=3 Tax=Cafe... [more]
A0A2K1JVY1_PHYPA3.130e-1655.71DNA replication licensing factor MCM7 n=2 Tax=Phys... [more]
A0A2D4CAX7_PYTIN3.130e-1658.46DNA replication licensing factor MCM7 n=1 Tax=Pyth... [more]
A0A2D4BFW7_PYTIN3.140e-1658.46DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147201contigH-elongata_contig147201:123..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147201.3200.1prot_H-elongata_contig147201.3200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147201 123..658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.6327934-CDS-H-elongata_contig147201:122..2461622929873.6327934-CDS-H-elongata_contig147201:122..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147201 123..246 +
1691679190.7810442-CDS-H-elongata_contig147201:122..2461691679190.7810442-CDS-H-elongata_contig147201:122..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147201 123..246 +
1622929873.6481483-CDS-H-elongata_contig147201:581..6581622929873.6481483-CDS-H-elongata_contig147201:581..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147201 582..658 +
1691679190.7944264-CDS-H-elongata_contig147201:581..6581691679190.7944264-CDS-H-elongata_contig147201:581..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147201 582..658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.6663485-UTR-H-elongata_contig147201:658..6861622929873.6663485-UTR-H-elongata_contig147201:658..686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147201 659..686 +
1691679190.80214-UTR-H-elongata_contig147201:658..6861691679190.80214-UTR-H-elongata_contig147201:658..686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147201 659..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147201.3200.1

>prot_H-elongata_contig147201.3200.1 ID=prot_H-elongata_contig147201.3200.1|Name=mRNA_H-elongata_contig147201.3200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GRHGKRYRACKTRDIRAPVQEEPRARLRAFRPEVPQAIYLSGAHARTVRP
RGADELYRGGVRSAEG*
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mRNA from alignment at H-elongata_contig147201:123..686+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147201.3200.1 ID=mRNA_H-elongata_contig147201.3200.1|Name=mRNA_H-elongata_contig147201.3200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at H-elongata_contig147201:123..686+ (Himanthalia elongata Himel1 dioecious)
GGCCGACATGGAAAGCGATATCGCGCTTGCAAGACACGTGACATTCGTGC ACCAGTTCAAGAAGAACCCCGAGCTAGACTTCGAGCCTTTCGACCCGAAG TTCCTCAAGCTATATATCTCTCAGGTTGGAAGCCCCTGTTTTATGTTTTG TTTGTTTCGTGTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTTTTAATTGCTGTTTTGGGACATTTCTTGACGATATATGCC ATCTCATTTTACCCCCTCCTCCTCCTAACGATGAAACTTTATCTGCCTCC TATCTTGAAACTTTATCTGCCTCCTATCTTGAAACTTTATATGCCTTCTT CCTATCGTAGCCTAAAACGAAAAATAAGGCTGCTTGTTAGTATCCATGGA GCTGTCCCTCGACCCCCAACGCGACCACTGCACTTAATCCCGCCTCGCCA CGTATCCAGGCGCGCATGCTAGAACCGTACGTCCCCGAGGAGCTGACGAG CTATATCGTGGAGGCGTACGTAGCGCTGAGGGCTGAGTCCGGCCAGGACG CTAAGAACGGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig147201:123..686+

>mRNA_H-elongata_contig147201.3200.1 ID=mRNA_H-elongata_contig147201.3200.1|Name=mRNA_H-elongata_contig147201.3200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig147201:123..686+ (Himanthalia elongata Himel1 dioecious)
GGCCGACATGGAAAGCGATATCGCGCTTGCAAGACACGTGACATTCGTGC
ACCAGTTCAAGAAGAACCCCGAGCTAGACTTCGAGCCTTTCGACCCGAAG
TTCCTCAAGCTATATATCTCTCAGGGCCGACATGGAAAGCGATATCGCGC
TTGCAAGACACGTGACATTCGTGCACCAGTTCAAGAAGAACCCCGAGCTA
GACTTCGAGCCTTTCGACCCGAAGTTCCTCAAGCTATATATCTCTCAGGC
GCGCATGCTAGAACCGTACGTCCCCGAGGAGCTGACGAGCTATATCGTGG
AGGCGTACGTAGCGCTGAGGGCTGAGCGCGCATGCTAGAACCGTACGTCC
CCGAGGAGCTGACGAGCTATATCGTGGAGGCGTACGTAGCGCTGAGGGCT
GA
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