mRNA_H-elongata_contig147104.3195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147104.3195.1
Unique NamemRNA_H-elongata_contig147104.3195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: D7G7C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C9_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.220e-61
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLRETVDNLIDG 321
            VCDGILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEELVLPLV QVL++ GGQ TL STL MLRETVDNL+DG
Sbjct:   15 VCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDG 121          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.050e-59
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLRETVDNLIDG 321
            VCDGILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEELVLPLV QVL++ GGQ TL STL MLRETVDNL+DG
Sbjct:  119 VCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDG 225          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC)

HSP 1 Score: 134 bits (337), Expect = 2.290e-34
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQL--TLLSTLSMLRETVDNLIDG 321
            CD ILDRFE+ A+PLA EYGALPVVG+GHSCGALL LLI+CLFP TPRA N LISFNNKP ++A+P FEE+V+P+ +Q++  +   +   L   +  LR +VD+  + 
Sbjct:  455 CDSILDRFEKIAIPLAREYGALPVVGVGHSCGALLHLLISCLFPGTPRAGNVLISFNNKPAAEAIPFFEEVVVPIASQLMNSRTQSVPGNLRELVRFLRTSVDDFAEA 562          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A4D9DB40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB40_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.640e-34
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKG 255
            VCD +L+RFER A+PLA EYGALPVVGIGHSCGALLQ+LITCLFPDTPR ANALISFNN+    A+P FEELV+PL   ++ + G
Sbjct:  269 VCDTVLERFERVAIPLAKEYGALPVVGIGHSCGALLQVLITCLFPDTPRLANALISFNNQMAQKAIPAFEELVVPLSLSLMGEDG 353          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A8J9SXH5_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SXH5_PHATR)

HSP 1 Score: 122 bits (305), Expect = 4.250e-33
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
            CD IL RFE  A  LA +YGALPVVG+GHSCG++LQLLIT LFPDTPR ANALISFNNKPV++A+P FEE+V P  T V
Sbjct:   60 CDTILSRFEMVAATLARQYGALPVVGLGHSCGSVLQLLITSLFPDTPRGANALISFNNKPVTEAIPVFEEVVAPFFTYV 138          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: B7FPC9_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPC9_PHATC)

HSP 1 Score: 122 bits (305), Expect = 2.410e-32
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
            CD IL RFE  A  LA +YGALPVVG+GHSCG++LQLLIT LFPDTPR ANALISFNNKPV++A+P FEE+V P  T V
Sbjct:   60 CDTILSRFEMVAATLARQYGALPVVGLGHSCGSVLQLLITSLFPDTPRGANALISFNNKPVTEAIPVFEEVVAPFFTYV 138          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S0CE30_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE30_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.110e-31
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLR 294
            CD I+D+FER A  LA +YGA+PVVG+G SCGALLQLLIT LFPDTPRAAN L+SFNNK VS+AVP FEE+  PL   +    GG   L S L + R
Sbjct:   95 CDSIIDKFERIAPMLARQYGAVPVVGVGQSCGALLQLLITSLFPDTPRAANVLLSFNNKEVSEAVPFFEEVFAPLFVGISEGVGGTAKLESLLDLAR 191          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A1E7FSL7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSL7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.350e-31
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQ--------LTLLSTLSMLRETVDNL 312
            CD +L +FE  A  LA +YGALPVVGIGHSCGALLQ+LI+CLFPDTPRAANAL+SFNNKPVS+AVP FE+   P+ +++ RD   +        LT +  L ++ ET+  L
Sbjct:  164 CDDVLTKFENVAPTLARQYGALPVVGIGHSCGALLQVLISCLFPDTPRAANALLSFNNKPVSEAVPFFEDFFAPIPSEI-RDTYAKWAEPAVAALTEVGLLPVIHETIVTL 273          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S1V4F8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4F8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.160e-31
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   13 ILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKG 255
            IL  FER A  LA +YGA+PVVG+GHSCGALL LLIT LFPDTPRAANAL+SFNNKPV +AVP FEE+  PL T + +  G
Sbjct:    2 ILASFERIAPMLARQYGAIPVVGVGHSCGALLHLLITSLFPDTPRAANALLSFNNKPVKEAVPFFEEVFAPLFTTLSQTNG 82          
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S4AIW9_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIW9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.880e-30
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
            CDG+L +FE  A  LA EYGALPVVGIGHSCGALLQ+LI+ LFPDTPR ANAL+SFNNKPVSDAVP FEE   P+ + +
Sbjct:  254 CDGVLTKFEAVAPTLAREYGALPVVGIGHSCGALLQVLISSLFPDTPRLANALLSFNNKPVSDAVPFFEEFFAPVFSSL 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C9_ECTSI6.220e-6189.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE48_9PHAE1.050e-5989.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4G6R9_VITBC2.290e-3457.41Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9DB40_9STRA2.640e-3471.76Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J9SXH5_PHATR4.250e-3372.15Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FPC9_PHATC2.410e-3272.15Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S0CE30_9STRA1.110e-3162.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FSL7_9STRA1.350e-3156.76Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1V4F8_9STRA4.160e-3169.14Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4AIW9_9STRA2.880e-3072.15Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147104contigH-elongata_contig147104:401..1170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D7G7C9
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QU9N@2759,COG1084@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.357364-CDS-H-elongata_contig147104:400..4871622929873.357364-CDS-H-elongata_contig147104:400..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147104 401..487 -
1691679190.639851-CDS-H-elongata_contig147104:400..4871691679190.639851-CDS-H-elongata_contig147104:400..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147104 401..487 -
1622929873.3742108-CDS-H-elongata_contig147104:933..11701622929873.3742108-CDS-H-elongata_contig147104:933..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147104 934..1170 -
1691679190.6505625-CDS-H-elongata_contig147104:933..11701691679190.6505625-CDS-H-elongata_contig147104:933..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147104 934..1170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147104.3195.1prot_H-elongata_contig147104.3195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147104 401..1170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147104.3195.1

>prot_H-elongata_contig147104.3195.1 ID=prot_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRA
ANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLRET
VDNLIDG*
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mRNA from alignment at H-elongata_contig147104:401..1170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147104.3195.1 ID=mRNA_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig147104:401..1170- (Himanthalia elongata Himel1 dioecious)
GTGTGCGACGGTATCCTGGACCGGTTCGAGCGCGCCGCGGTTCCCCTGGC CGCGGAGTACGGGGCCCTCCCTGTCGTGGGGATCGGGCACTCGTGCGGGG CGCTGCTGCAGCTGCTCATCACCTGCCTCTTTCCGGATACGCCGAGGGCG GCCAACGCGTTAATCTCGTTCAACAACAAGCCCGTTTCGGACGCCGTACC AGGGTTCGAGGAGCTCGTCTTGCCGTTGGTGACGCAGGTAAGGGTCTACT ACAAAGATAAGCATTTTATGATATTATAAACAAGATAAACCAACCGGTGT GTGCAGGTTAGGGTACTCACGGTTTGCATACCTTAGCTGCTATAATAGGC TACATTGACCACGCGGCCTCGGTAGGAGGGAGCATTGGGGAGGGGGTGGG AGGGATAAAGCGTTTCCTTGAAGCCGCGCGTTCCGCTGTCGATTGTTTTC CCCTCTCTCATGTGAACTTAGGTGGACTGTATTTTATTGCATGGTTCCAT ACTTTACCGTTTACCGTTTACCCTTTTTTCTAGGGAGACTTGGCGCTTAC GACGCCGCGAGGTCGCTGTCGTCGATTATCTCTTGATGCACCCACCATCA TCATGTCTGGATCACTCGCGCGGCGCTTGCTCGATCCCCACTCCTTGCTA ATATCATAACATCATAACACGTCGAGGTCACAGGTGCTCAGGGATAAAGG AGGGCAGCTCACCCTACTATCGACGCTCTCGATGTTGAGAGAGACGGTAG ACAACCTCATCGATGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig147104:401..1170-

>mRNA_H-elongata_contig147104.3195.1 ID=mRNA_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig147104:401..1170- (Himanthalia elongata Himel1 dioecious)
GTGTGCGACGGTATCCTGGACCGGTTCGAGCGCGCCGCGGTTCCCCTGGC
CGCGGAGTACGGGGCCCTCCCTGTCGTGGGGATCGGGCACTCGTGCGGGG
CGCTGCTGCAGCTGCTCATCACCTGCCTCTTTCCGGATACGCCGAGGGCG
GCCAACGCGTTAATCTCGTTCAACAACAAGCCCGTTTCGGACGCCGTACC
AGGGTTCGAGGAGCTCGTCTTGCCGTTGGTGACGCAGGTGTGCGACGGTA
TCCTGGACCGGTTCGAGCGCGCCGCGGTTCCCCTGGCCGCGGAGTACGGG
GCCCTCCCTGTCGTGGGGATCGGGCACTCGTGCGGGGCGCTGCTGCAGCT
GCTCATCACCTGCCTCTTTCCGGATACGCCGAGGGCGGCCAACGCGTTAA
TCTCGTTCAACAACAAGCCCGTTTCGGACGCCGTACCAGGGTTCGAGGAG
CTCGTCTTGCCGTTGGTGACGCAGGTGCTCAGGGATAAAGGAGGGCAGCT
CACCCTACTATCGACGCTCTCGATGTTGAGAGAGACGGTAGACAACCTCA
TCGATGGGTAAGTGCTCAGGGATAAAGGAGGGCAGCTCACCCTACTATCG
ACGCTCTCGATGTTGAGAGAGACGGTAGACAACCTCATCGATGGGTAA
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