mRNA_H-elongata_contig147075.3192.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147075.3192.1
Unique NamemRNA_H-elongata_contig147075.3192.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 203 bits (516), Expect = 1.420e-56
Identity = 147/454 (32.38%), Postives = 225/454 (49.56%), Query Frame = 1
Query:    1 GVWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLRFQANPCVFRRILHGAVV----------------------VVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFG------VTKTSIMPKVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVI-----QIGIRRAG*DGKRVAFPTTGQGV-------HDPPIDVA--IKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G W  V+RQ    V+ T+ VF +K  + G I ++K RLVA GF Q+ G+ + E+     +  +IR  LS+  A G+   QLDVD A+L  D+ E++Y+E  E  +    +V +L +A+YGL+ QA    F+ I HGA++                        I +YVDD++V   T+   ++  + + +   IK++G   + LG  I  DR    L  +Q  Y++T+ ERF       VT        LSK+D P+   +  EM + PYR ++G L   A  TRP+I+FA   L++F +NPGP HW AA + L+YL  TRD GI+YGG+   +  +                  G   DD      LV+     NGG ++     Q  +  +  + + +A    GQ V       HD  I++   I++ EDN+GAI +A N     RT+H+DI
Sbjct:   24 GTWTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLK-QAGNAWFKTI-HGALIDLGFKPCGSDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVF-----------CDADWGTSVDDRRSVSGLVIMM---NGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDI 461          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 196 bits (499), Expect = 2.590e-53
Identity = 142/433 (32.79%), Postives = 221/433 (51.04%), Query Frame = 1
Query:    1 GVWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQ-VGQLKEAMYGLRFQANPCVFRRIL------HGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTK-----TSIMPK-VLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDP---------PIDVAIKINEDNEGAIKMAKNRFTSRRTRHVD 1233
            G W +VE   G+  +G++ V++ K   DG I+++K RLVA+GF Q  G  Y E+   T  Q  +R VL++ A      R +D+  A++  D+D EIY+   E +R    + V +L +++YGL+ QA P ++   L      +  V V++ V+VDD+ + S ++   ++ V  L     ++D+G  SY LG  ITR+R    L   Q QYI    E FG+T      T + P  +LSKS SPQT  EVEEM +IPY   VG+L+  AT+TRP+I++ A  LA+FN NPG  HW+A +  L+YL  T D+ + YG +P  + L   +          + L   R       G+ L L S   +    +Q  +  +  + + +A    G+ +                  K+  DN+  IK+AKN     R +H+D
Sbjct:  134 GTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLK-QA-PRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYGPDPTTNDLFVTYC--------DSDLGGNRDNGKSTTGYILKLGSGAVSWSSKLQPMVTLSSTEAEYIAAVAAGKEIKAMRNLLEELGYQSQQPAKLLIDNQSTIKVAKNPEHHGRMKHLD 556          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 9.740e-52
Identity = 136/429 (31.70%), Postives = 212/429 (49.42%), Query Frame = 1
Query:   31 GKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLR---------------------FQANPCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRL-----RHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPID-VAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G+  + ++  F  K  K+G+I  +K RLVA+GF Q+  + Y  S    P+ A+I+ +L++    G      DV  AY    +DEE++++L     D   ++ + + A+YGL+                      +A+PCVFR+++   VV++IV+YVDD+LV + +  D E+ +  L    P K++GE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P        P+   E EE  + P RE +G++M  +T +RP++SFA   +A+    P   HW A QK L YL  TRDLGITY    G    + +          R + G A+   G     G +   +V  S+        +     AG   K   F         P     +IK+ EDN+GAI + +N  +S RT+H+D+
Sbjct:  778 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDV 1196          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.060e-51
Identity = 136/429 (31.70%), Postives = 212/429 (49.42%), Query Frame = 1
Query:   31 GKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLR---------------------FQANPCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRL-----RHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPID-VAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G+  + ++  F  K  K+G+I  +K RLVA+GF Q+  + Y  S    P+ A+I+ +L++    G      DV  AY    +DEE++++L     D   ++ + + A+YGL+                      +A+PCVFR+++   VV++IV+YVDD+LV + +  D E+ +  L    P K++GE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P        P+   E EE  + P RE +G++M  +T +RP++SFA   +A+    P   HW A QK L YL  TRDLGITY    G    + +          R + G A+   G     G +   +V  S+        +     AG   K   F         P     +IK+ EDN+GAI + +N  +S RT+H+D+
Sbjct: 1157 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDV 1575          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.080e-51
Identity = 136/429 (31.70%), Postives = 212/429 (49.42%), Query Frame = 1
Query:   31 GKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLR---------------------FQANPCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRL-----RHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPID-VAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G+  + ++  F  K  K+G+I  +K RLVA+GF Q+  + Y  S    P+ A+I+ +L++    G      DV  AY    +DEE++++L     D   ++ + + A+YGL+                      +A+PCVFR+++   VV++IV+YVDD+LV + +  D E+ +  L    P K++GE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P        P+   E EE  + P RE +G++M  +T +RP++SFA   +A+    P   HW A QK L YL  TRDLGITY    G    + +          R + G A+   G     G +   +V  S+        +     AG   K   F         P     +IK+ EDN+GAI + +N  +S RT+H+D+
Sbjct: 1177 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDV 1595          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.090e-51
Identity = 136/429 (31.70%), Postives = 212/429 (49.42%), Query Frame = 1
Query:   31 GKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLR---------------------FQANPCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEPGGDQLICMHRRRL-----RHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPID-VAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G+  + ++  F  K  K+G+I  +K RLVA+GF Q+  + Y  S    P+ A+I+ +L++    G      DV  AY    +DEE++++L     D   ++ + + A+YGL+                      +A+PCVFR+++   VV++IV+YVDD+LV + +  D E+ +  L    P K++GE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P        P+   E EE  + P RE +G++M  +T +RP++SFA   +A+    P   HW A QK L YL  TRDLGITY    G    + +          R + G A+   G     G +   +V  S+        +     AG   K   F         P     +IK+ EDN+GAI + +N  +S RT+H+D+
Sbjct: 1320 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDV 1738          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 193 bits (491), Expect = 1.550e-50
Identity = 144/448 (32.14%), Postives = 218/448 (48.66%), Query Frame = 1
Query:    1 GVWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVEL--SEAYRDFRKQVGQLKEAMYGL---------------------RFQANPCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KTSIMP----KVLSKSDSPQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGGEP-------GGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPIDVAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            G W++V R     V+ ++ V + K    G I KYK RLVA+GF QV G+ Y ++       ++IR +L++ A  GW A   D + AYL   +DE++Y+E     A+ D +  V +L++A+YGL                     R +A+  VF +   G  ++V+ V+VDD L+  +++R  +     + +   I D+G  S+ LG  I+ D  AGTL   QH YI+ +  RF  T  K   MP    ++LSK+  P++ AEV  MR++PYRE +G LM AA  TRP+I+FA   LA+F  NPG  HW A ++  +YL  TR L + YGG+          D     HRR +    G+  L  G  G   W      L +         +     A    K   +     G    P+  A  +  DN+ AI + K+     RT+H+D+
Sbjct:  828 GTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKH-EGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQRELEGYVNADGATQEHRRAIT---GYVFLVDG--GAVSWASKKQELVTLS-----TAESEYVAATHAAKEAIWLRRLIGEVFGPLSNATMLYSDNQAAIALTKDGSYHARTKHIDV 1264          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A2N9GQF3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GQF3_FAGSY)

HSP 1 Score: 190 bits (482), Expect = 1.940e-49
Identity = 143/459 (31.15%), Postives = 218/459 (47.49%), Query Frame = 1
Query:    1 GVWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAYR--DFRKQVGQLKEAMYGLR------------------FQAN---PCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDS------PQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYG--------GEPGGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVH----------DPPIDVAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            GVW +VE   G   +G + VFK K    G I++YK RLVA+GF Q +GI Y E+  L   + ++R +L+++A      +Q+DV  A+L  D++EE+Y++  E +   D  + V +LK+++YGL+                  F  N    C+++++  G+ +  +V+YVDD+L+ +  K    +  + L     +KDMGEASY +G  I RDR  G L   Q  YI  V +RF +   S     + K D       P+   E E+M+ IPY   VG+LM A   TRP+I+FA   L ++  +PG  HWRAA+K ++YL  T+D  + Y         G    D   C+  R+     G+  L     G   WR     LT+        +               F  T  GV              I   ++I  DN  A+ MAKN  +  R++H+DI
Sbjct:  540 GVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSLLSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQLEGFSSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLKRFRMNDCSPSVAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVYTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKS--TSGYIFLMAS--GAVSWRSAKQTLTATSTMEAEFVSC-------------FEATSHGVWLKSFISRLRIMDSISRPLRIYCDNSAAVFMAKNNKSGSRSKHIDI 980          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A438FE96_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FE96_VITVI)

HSP 1 Score: 190 bits (482), Expect = 2.260e-49
Identity = 144/448 (32.14%), Postives = 219/448 (48.88%), Query Frame = 1
Query:    4 VWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAY--RDFRKQVGQLKEAMYGLR------------------FQAN---PCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDS------PQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYG--------GEPGGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPIDVAIKINEDNEGAIKMAKNRFTSRRTRHVDI 1236
            VW +VE   G   +G + VFK K    G IK+YK RLVA+GF Q +GI Y E+      + ++R +L+++A      +Q+DV  A+L  +++EE+Y++  E +   D  + V +LK+++YGL+                  F  N    C++ ++  G+ +  +V+YVDD+L+ +  K    +  + L     +KDMGEASY +G  I RDR  G L   Q  YI  V ERF +   S     + K D       P+   E E+M+ IPY   VG+LM A   TRP+I+FA   L ++  NPG  HW+AA+K ++YL  T+D  + Y         G    D   C+  R+     G+  + VG  G   WR     +T+        I      A   G  +    +G  V D  I   + I  DN  A+ MAKN  +  R++H+DI
Sbjct:  672 VWDLVELPNGAKTIGCKWVFKTKKDSLGNIKRYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFSFVENVMDQCIYLKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDSDFAGCVDSRKS--TSGYIFILVG--GAISWRSIKQTMTATSTMEAEFISC--FEATSHGVWLKSFISGLRVMDS-ISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDI 1111          
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 189 bits (481), Expect = 3.140e-49
Identity = 142/459 (30.94%), Postives = 217/459 (47.28%), Query Frame = 1
Query:    1 GVWQMVERQKGKTVLGTRVVFKRKIGKDGRIKKYKCRLVAQGFRQVKGIHYEESPFLTPAQANIRKVLSMIAALGW*ARQLDVDMAYLEVDVDEEIYVELSEAY--RDFRKQVGQLKEAMYGLR------------------FQAN---PCVFRRILHGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDS------PQTYAEVEEMRQIPYREIVGTLM*AATVTRPNISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYG--------GEPGGDQLICMHRRRLRHLPGHASLSVGRGGDDGWRGH*LVLTSAKGNGGGVIQIGIRRAG*DGKRVAFPTTGQGVHDPPIDVAIKINE----------DNEGAIKMAKNRFTSRRTRHVDI 1236
            GVW +VE   G   +G + VFK K    G I++YK RLVA+GF Q +GI Y E+      + ++R +L+++A      +Q+DV  A+L  D++EE+Y++  E +   D  + V +LK+++YGL+                  F  N    C+++++  G+ +  +V+YVDD+L+ +  K    +  + L     +KDMGEASY +G  I RDR  G L   Q  YI  V ERF +   S     + K D       P+   E E+M+ IPY   VG+LM A   TRP+I+FA   L ++  +PG  HWRAA+K ++YL  T+D  + Y         G    D   C+  R+     G+  L     G   WR     LT+        +               F  T  GV        ++I +          DN  A+ MAKN  +  R++H+DI
Sbjct:  716 GVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKS--TSGYIFLMAS--GAVSWRSAKQTLTATSTMEAEFVSC-------------FEATSHGVWLKSFISGLRIMDSISRPLRMYCDNSAAVFMAKNNKSGSRSKHIDI 1156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147075.3192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CTN1_PYTOL1.420e-5632.38Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
E2LZP6_MONPE2.590e-5332.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE9.740e-5231.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.060e-5131.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.080e-5131.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.090e-5131.70Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A060SPD4_PYCCI1.550e-5032.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GQF3_FAGSY1.940e-4931.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A438FE96_VITVI2.260e-4932.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9EM55_FAGSY3.140e-4930.94Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147075contigH-elongata_contig147075:2..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score95.9
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog6334.EFV57947
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1236
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147075.3192.1prot_H-elongata_contig147075.3192.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147075 485..1061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.1659749-UTR-H-elongata_contig147075:1..4841622929873.1659749-UTR-H-elongata_contig147075:1..484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147075 2..484 -
1691679190.5439074-UTR-H-elongata_contig147075:1..4841691679190.5439074-UTR-H-elongata_contig147075:1..484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147075 2..484 -
1622929873.2214773-UTR-H-elongata_contig147075:1061..13131622929873.2214773-UTR-H-elongata_contig147075:1061..1313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147075 1062..1313 -
1691679190.5809555-UTR-H-elongata_contig147075:1061..13131691679190.5809555-UTR-H-elongata_contig147075:1061..1313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147075 1062..1313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.1813645-CDS-H-elongata_contig147075:484..5811622929873.1813645-CDS-H-elongata_contig147075:484..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 485..581 -
1691679190.5527332-CDS-H-elongata_contig147075:484..5811691679190.5527332-CDS-H-elongata_contig147075:484..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 485..581 -
1622929873.1944716-CDS-H-elongata_contig147075:595..8881622929873.1944716-CDS-H-elongata_contig147075:595..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 596..888 -
1691679190.5617266-CDS-H-elongata_contig147075:595..8881691679190.5617266-CDS-H-elongata_contig147075:595..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 596..888 -
1622929873.2105153-CDS-H-elongata_contig147075:950..10611622929873.2105153-CDS-H-elongata_contig147075:950..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 951..1061 -
1691679190.5712597-CDS-H-elongata_contig147075:950..10611691679190.5712597-CDS-H-elongata_contig147075:950..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147075 951..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147075.3192.1

>prot_H-elongata_contig147075.3192.1 ID=prot_H-elongata_contig147075.3192.1|Name=mRNA_H-elongata_contig147075.3192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MAYLEVDVDEEIYVELSEAYRDFRKQVGQLKEAMYGLRFQANPCVFRRIL
HGAVVVVIVVYVDDLLVLSATKRDEEQAVRDLCSCLPIKDMGEASYYLGC
HITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIMPKVLSKSDSPQTYAEV
EEMRQIPYREIVGTLM*
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mRNA from alignment at H-elongata_contig147075:2..1313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147075.3192.1 ID=mRNA_H-elongata_contig147075.3192.1|Name=mRNA_H-elongata_contig147075.3192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-elongata_contig147075:2..1313- (Himanthalia elongata Himel1 dioecious)
GGCGTGTGGCAGATGGTGGAGCGCCAAAAAGGGAAGACGGTGTTGGGCAC GAGAGTAGTTTTCAAGCGCAAAATCGGCAAGGATGGAAGGATCAAGAAGT ATAAATGTCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACAC TACGAGGAATCCCCCTTTCTGACTCCTGCGCAGGCCAACATTAGAAAGGT ACTGAGCATGATCGCCGCTCTCGGCTGGTAGGCGCGGCAGCTGGACGTCG ACATGGCCTACCTGGAGGTTGATGTAGATGAGGAGATCTATGTTGAACTC TCGGAGGCATACCGTGACTTCAGGAAGCAGGTCGGCCAACTAAAGGAGGC AATGTACGGACTCGTCCACGCCGAGCTGCTGTAGTAAAAAAGTTCGGGAT CGAGCTCGAGCTGAAGGGTTTCCAGAGATTTCAAGCCAACCCATGCGTGT TCCGGCGGATTCTCCACGGGGCAGTGGTAGTCGTCATCGTGGTCTACGTC GACGACCTGCTGGTTCTTAGTGCGACGAAACGTGACGAGGAGCAAGCGGT AAGGGACCTGTGCTCCTGTCTCCCCATCAAGGATATGGGAGAGGCTTCAT ATTACCTGGGATGCCACATCACGCGGGATCGGAACGCCGGGACACTGAAA TTCGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGAC GAAGACCAGCATCATGCCGTCTGCGGCAGAAGGAAAGTCCTTTCGAAATC AGACAGCCCGCAAACGTACGCAGAGGTTGAAGAAATGCGCCAGATTCCCT ACCGAGAAATCGTTGGGACCCTAATGTGAGCAGCGACGGTGACCAGGCCC AATATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCTGG ACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCA CTCGGGACCTCGGGATCACCTACGGAGGGGAACCGGGGGGGGACCAACTT ATCTGCATGCATCGACGCAGACTACGGCACCTGCCCGGACACGCATCGCT CAGTGTCGGGAGGGGCGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTC TCACAAGTGCAAAAGGTAATGGCGGCGGCGTCATCCAAATTGGAATACGT CGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAAGG AGTTCATGACCCCCCAATCGACGTCGCCATCAAGATAAACGAGGACAACG AAGGCGCAATCAAGATGGCGAAAAACCGCTTCACCAGTCGACGAACGAGG CACGTGGACATC
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Coding sequence (CDS) from alignment at H-elongata_contig147075:2..1313-

>mRNA_H-elongata_contig147075.3192.1 ID=mRNA_H-elongata_contig147075.3192.1|Name=mRNA_H-elongata_contig147075.3192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig147075:2..1313- (Himanthalia elongata Himel1 dioecious)
ATGGCCTACCTGGAGGTTGATGTAGATGAGGAGATCTATGTTGAACTCTC
GGAGGCATACCGTGACTTCAGGAAGCAGGTCGGCCAACTAAAGGAGGCAA
TGTACGGACTCATGGCCTACCTGGAGGTTGATGTAGATGAGGAGATCTAT
GTTGAACTCTCGGAGGCATACCGTGACTTCAGGAAGCAGGTCGGCCAACT
AAAGGAGGCAATGTACGGACTCAGATTTCAAGCCAACCCATGCGTGTTCC
GGCGGATTCTCCACGGGGCAGTGGTAGTCGTCATCGTGGTCTACGTCGAC
GACCTGCTGGTTCTTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTAAG
GGACCTGTGCTCCTGTCTCCCCATCAAGGATATGGGAGAGGCTTCATATT
ACCTGGGATGCCACATCACGCGGGATCGGAACGCCGGGACACTGAAATTC
GACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACGAA
GACCAGCATCATGCCAGATTTCAAGCCAACCCATGCGTGTTCCGGCGGAT
TCTCCACGGGGCAGTGGTAGTCGTCATCGTGGTCTACGTCGACGACCTGC
TGGTTCTTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTAAGGGACCTG
TGCTCCTGTCTCCCCATCAAGGATATGGGAGAGGCTTCATATTACCTGGG
ATGCCACATCACGCGGGATCGGAACGCCGGGACACTGAAATTCGACCAGC
ATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACGAAGACCAGC
ATCATGCCGAAAGTCCTTTCGAAATCAGACAGCCCGCAAACGTACGCAGA
GGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGACCCTAA
TGTGAGAAAGTCCTTTCGAAATCAGACAGCCCGCAAACGTACGCAGAGGT
TGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGACCCTAATGT
GA
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