mRNA_H-elongata_contig147060.3191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147060.3191.1
Unique NamemRNA_H-elongata_contig147060.3191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147060.3191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147060contigH-elongata_contig147060:219..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.1251078-CDS-H-elongata_contig147060:218..6171622929873.1251078-CDS-H-elongata_contig147060:218..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147060 219..617 +
1691679190.528452-CDS-H-elongata_contig147060:218..6171691679190.528452-CDS-H-elongata_contig147060:218..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147060 219..617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.135801-UTR-H-elongata_contig147060:617..7841622929873.135801-UTR-H-elongata_contig147060:617..784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147060 618..784 +
1691679190.5359066-UTR-H-elongata_contig147060:617..7841691679190.5359066-UTR-H-elongata_contig147060:617..784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147060 618..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147060.3191.1prot_H-elongata_contig147060.3191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147060 219..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147060.3191.1

>prot_H-elongata_contig147060.3191.1 ID=prot_H-elongata_contig147060.3191.1|Name=mRNA_H-elongata_contig147060.3191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
TATALLPAPAAPPLDATLCGVGVSNAATAPPLSIPSSVEASILFPIWWIF
VACGADAIATIVTDAAASTTTVATGVRASTAPAPSLTATKSALSAPPSLN
SYNLSNLDSVRQRRYRCHRNHVGPCLPHYHFN*
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mRNA from alignment at H-elongata_contig147060:219..784+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147060.3191.1 ID=mRNA_H-elongata_contig147060.3191.1|Name=mRNA_H-elongata_contig147060.3191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=566bp|location=Sequence derived from alignment at H-elongata_contig147060:219..784+ (Himanthalia elongata Himel1 dioecious)
ACCGCTACCGCTCTCCTTCCTGCCCCCGCCGCCCCACCTTTGGACGCAAC
TCTCTGTGGCGTTGGTGTTTCAAATGCCGCCACGGCCCCGCCCCTTTCGA
TCCCCAGTTCGGTTGAGGCCTCCATCTTGTTTCCGATCTGGTGGATTTTC
GTTGCTTGCGGGGCGGATGCCATCGCCACCATCGTCACCGATGCCGCCGC
GTCCACCACTACTGTGGCAACTGGTGTTCGCGCCTCAACCGCTCCCGCCC
CCTCTCTCACGGCTACAAAGTCGGCGCTCAGCGCACCCCCTTCCCTCAAT
TCCTACAACCTGAGTAATCTTGACAGCGTGCGCCAGCGGCGGTATCGCTG
CCACCGCAACCACGTCGGTCCCTGCTTGCCGCACTATCACTTCAACTGAT
CGTGCGACTGCTGCCGGTGCGTTCGGTTCCTCGCACTCGGTCAGTAAAGG
TGGTGCGAGATTTCCTTCAACTTCTTTCACCACCTTCATCGCCGCGCCAG
CGACCACTGCAAGCGGTGCGGTTCCCTCTTCGACTCCCCTCTCCTCCTCC
TTCGTAACTACCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig147060:219..784+

>mRNA_H-elongata_contig147060.3191.1 ID=mRNA_H-elongata_contig147060.3191.1|Name=mRNA_H-elongata_contig147060.3191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig147060:219..784+ (Himanthalia elongata Himel1 dioecious)
ACCGCTACCGCTCTCCTTCCTGCCCCCGCCGCCCCACCTTTGGACGCAAC
TCTCTGTGGCGTTGGTGTTTCAAATGCCGCCACGGCCCCGCCCCTTTCGA
TCCCCAGTTCGGTTGAGGCCTCCATCTTGTTTCCGATCTGGTGGATTTTC
GTTGCTTGCGGGGCGGATGCCATCGCCACCATCGTCACCGATGCCGCCGC
GTCCACCACTACTGTGGCAACTGGTGTTCGCGCCTCAACCGCTCCCGCCC
CCTCTCTCACGGCTACAAAGTCGGCGCTCAGCGCACCCCCTTCCCTCAAT
TCCTACAACCTGAGTAATCTTGACAGCGTGCGCCAGCGGCGGTATCGCTG
CCACCGCAACCACGTCGGTCCCTGCTTGCCGCACTATCACTTCAACTGAA
CCGCTACCGCTCTCCTTCCTGCCCCCGCCGCCCCACCTTTGGACGCAACT
CTCTGTGGCGTTGGTGTTTCAAATGCCGCCACGGCCCCGCCCCTTTCGAT
CCCCAGTTCGGTTGAGGCCTCCATCTTGTTTCCGATCTGGTGGATTTTCG
TTGCTTGCGGGGCGGATGCCATCGCCACCATCGTCACCGATGCCGCCGCG
TCCACCACTACTGTGGCAACTGGTGTTCGCGCCTCAACCGCTCCCGCCCC
CTCTCTCACGGCTACAAAGTCGGCGCTCAGCGCACCCCCTTCCCTCAATT
CCTACAACCTGAGTAATCTTGACAGCGTGCGCCAGCGGCGGTATCGCTGC
CACCGCAACCACGTCGGTCCCTGCTTGCCGCACTATCACTTCAACTGA
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