mRNA_H-elongata_contig146971.3187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146971.3187.1
Unique NamemRNA_H-elongata_contig146971.3187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146971.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146971contigH-elongata_contig146971:788..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146971.3187.1prot_H-elongata_contig146971.3187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146971 795..1118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.812524-UTR-H-elongata_contig146971:787..7941622929872.812524-UTR-H-elongata_contig146971:787..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146971 788..794 +
1691679190.3593507-UTR-H-elongata_contig146971:787..7941691679190.3593507-UTR-H-elongata_contig146971:787..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146971 788..794 +
1622929872.8404386-UTR-H-elongata_contig146971:1118..11421622929872.8404386-UTR-H-elongata_contig146971:1118..1142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146971 1119..1142 +
1691679190.37877-UTR-H-elongata_contig146971:1118..11421691679190.37877-UTR-H-elongata_contig146971:1118..1142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146971 1119..1142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.8270018-CDS-H-elongata_contig146971:794..11181622929872.8270018-CDS-H-elongata_contig146971:794..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146971 795..1118 +
1691679190.3693247-CDS-H-elongata_contig146971:794..11181691679190.3693247-CDS-H-elongata_contig146971:794..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146971 795..1118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146971.3187.1

>prot_H-elongata_contig146971.3187.1 ID=prot_H-elongata_contig146971.3187.1|Name=mRNA_H-elongata_contig146971.3187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MSSGVPSACGYRETYFPLSMRAPENFVSRDGFDPSFPALARLFSQPRLNL
ERTSGILSFSATASIPTVNRHRANHKFHQITQLRTDGVYYYHRESTADTE
PAVLKVA*
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mRNA from alignment at H-elongata_contig146971:788..1142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146971.3187.1 ID=mRNA_H-elongata_contig146971.3187.1|Name=mRNA_H-elongata_contig146971.3187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=355bp|location=Sequence derived from alignment at H-elongata_contig146971:788..1142+ (Himanthalia elongata Himel1 dioecious)
CTGTGGGATGAGTTCGGGCGTCCCGTCCGCATGTGGTTACAGGGAAACAT
ATTTTCCCCTGTCCATGCGCGCGCCTGAGAATTTCGTCTCGCGAGACGGG
TTCGACCCGTCTTTTCCCGCGTTAGCCCGCTTATTCTCTCAACCCAGACT
AAATCTGGAGCGTACTTCCGGGATCCTCTCGTTTTCCGCAACGGCATCCA
TCCCCACCGTCAATCGCCATCGGGCCAATCATAAATTTCATCAGATCACG
CAATTGCGTACCGATGGCGTTTACTATTACCACCGAGAGTCCACCGCCGA
CACTGAGCCAGCAGTCCTCAAGGTAGCTTGAGTAACGTGTGCAGCCTTTT
TCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig146971:788..1142+

>mRNA_H-elongata_contig146971.3187.1 ID=mRNA_H-elongata_contig146971.3187.1|Name=mRNA_H-elongata_contig146971.3187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig146971:788..1142+ (Himanthalia elongata Himel1 dioecious)
ATGAGTTCGGGCGTCCCGTCCGCATGTGGTTACAGGGAAACATATTTTCC
CCTGTCCATGCGCGCGCCTGAGAATTTCGTCTCGCGAGACGGGTTCGACC
CGTCTTTTCCCGCGTTAGCCCGCTTATTCTCTCAACCCAGACTAAATCTG
GAGCGTACTTCCGGGATCCTCTCGTTTTCCGCAACGGCATCCATCCCCAC
CGTCAATCGCCATCGGGCCAATCATAAATTTCATCAGATCACGCAATTGC
GTACCGATGGCGTTTACTATTACCACCGAGAGTCCACCGCCGACACTGAG
CCAGCAGTCCTCAAGGTAGCTTGAATGAGTTCGGGCGTCCCGTCCGCATG
TGGTTACAGGGAAACATATTTTCCCCTGTCCATGCGCGCGCCTGAGAATT
TCGTCTCGCGAGACGGGTTCGACCCGTCTTTTCCCGCGTTAGCCCGCTTA
TTCTCTCAACCCAGACTAAATCTGGAGCGTACTTCCGGGATCCTCTCGTT
TTCCGCAACGGCATCCATCCCCACCGTCAATCGCCATCGGGCCAATCATA
AATTTCATCAGATCACGCAATTGCGTACCGATGGCGTTTACTATTACCAC
CGAGAGTCCACCGCCGACACTGAGCCAGCAGTCCTCAAGGTAGCTTGA
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