mRNA_H-elongata_contig103781.319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103781.319.1
Unique NamemRNA_H-elongata_contig103781.319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.440e-63
Identity = 105/110 (95.45%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITRN 330
            +VLIFSQFIGMLDMVQEFL+LRGH+HERLDGRTTGNERQKSIDRFNR+PNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR+
Sbjct: 2345 KVLIFSQFIGMLDMVQEFLSLRGHKHERLDGRTTGNERQKSIDRFNRDPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITRD 2454
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A836CJJ2_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.920e-53
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            +VL+FSQFIGMLD++ E+ +L G  HERLDGR TGNERQ++IDRFNR+P SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQAMARCHRIGQTK V +YRLITR
Sbjct:  383 KVLLFSQFIGMLDIIGEYASLSGIPHERLDGRITGNERQRAIDRFNRDPASFLFLLSTRAGGVGINLTAADVCIIFDSDWNPQNDVQAMARCHRIGQTKQVAIYRLITR 491
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: K0TFF6_THAOC (Helicase C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFF6_THAOC)

HSP 1 Score: 172 bits (435), Expect = 2.300e-50
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324
            +VLIFSQF+ MLD++ ++   R  RHERLDGR  G ERQK+IDRF  E +SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRL+T
Sbjct:   22 KVLIFSQFVKMLDLISDYCTFRDFRHERLDGRVRGTERQKAIDRFETEEDSFIFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLVT 129
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S3UZC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZC9_HETAK)

HSP 1 Score: 174 bits (442), Expect = 5.220e-50
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            +VL FSQ + +LD+++EF   RG+  ERLDGR TGN RQ+SIDRFNR+P+SFVFLLSTRAGGVGINLTAADT II+DSDWNPQNDVQA ARCHRIGQTK VMVYRLITR
Sbjct:  391 RVLFFSQMVRVLDLLEEFCEYRGYPCERLDGRITGNARQESIDRFNRDPDSFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAQARCHRIGQTKDVMVYRLITR 499
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A812VYK8_SYMMI (Chd6 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYK8_SYMMI)

HSP 1 Score: 172 bits (436), Expect = 8.390e-49
Identity = 81/109 (74.31%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            +VLIFSQ + M+D + E+  +RG+  ERLDGR  GN+RQK+IDRFN +P SF+FLLSTRAGGVGINLTAADT II+DSDWNPQNDVQAMARCHRIGQ+K+V VYRLITR
Sbjct:  209 KVLIFSQMVKMIDFIDEYCLIRGYNRERLDGRVRGNDRQKAIDRFNMDPASFIFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAMARCHRIGQSKNVTVYRLITR 317
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S2DNW9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNW9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.000e-48
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            +VLIFSQ + MLD+++E+   + +  ERLDG+ TG ERQK++DRFN+  +SFVFLLSTRAGGVGINLTAADTCII+DSDWNPQNDVQAMARCHRIGQ K VM+YRL+TR
Sbjct:  232 KVLIFSQMVRMLDLLEEYCLKKLYSVERLDGKVTGKERQKAMDRFNQNADSFVFLLSTRAGGVGINLTAADTCIIFDSDWNPQNDVQAMARCHRIGQKKKVMIYRLVTR 340
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S2EV94_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV94_9STRA)

HSP 1 Score: 173 bits (438), Expect = 7.800e-48
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324
            +VLIFSQ + MLD++ ++   RG RHERLDGR  GNERQK+IDRF  E +SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRLIT
Sbjct: 1420 KVLIFSQMVKMLDLISDYCDFRGFRHERLDGRVRGNERQKAIDRFETEHDSFLFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLIT 1527
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: B8LC70_THAPS (Chromodomain-helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC70_THAPS)

HSP 1 Score: 171 bits (433), Expect = 9.480e-48
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324
            +VLIFSQF+ MLD++ ++   R  R+ERLDGR  GNERQK+IDRF  E +SFVFLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRL+T
Sbjct:  440 KVLIFSQFVKMLDLISDYCDFREFRYERLDGRVRGNERQKAIDRFETEKDSFVFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLVT 547
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: W7TC43_9STRA (Chromodomain-helicase-dna-binding protein 7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC43_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.980e-47
Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            ++LIFSQ I +LD+++EF   RG   ERLDGR TGN+RQ++IDRFN +P+SFVFLLSTRAGGVGINLTAADT II+DSDWNPQNDVQAMARCHRIGQTK V VYRLITR
Sbjct: 1586 RLLIFSQMIKVLDLLEEFCERRGFPVERLDGRVTGNQRQQAIDRFNTDPDSFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAMARCHRIGQTKEVQVYRLITR 1694
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BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7R9YC09_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC09_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.950e-47
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327
            +VLIFSQ + MLD++Q+F   RG   ERLDG  TGN+RQK+IDRFN   +SFVFLLSTRAGGVGINLTAADT IIYDSDWNPQNDVQAMARCHRIGQTK V VYRLITR
Sbjct:  625 KVLIFSQMVRMLDLLQDFCGHRGFSCERLDGAITGNDRQKAIDRFNTREDSFVFLLSTRAGGVGINLTAADTVIIYDSDWNPQNDVQAMARCHRIGQTKDVRVYRLITR 733
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G873_ECTSI3.440e-6395.45Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
A0A836CJJ2_9STRA1.920e-5379.82SNF2 family N-terminal domain-containing protein (... [more]
K0TFF6_THAOC2.300e-5074.07Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S3UZC9_HETAK5.220e-5077.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812VYK8_SYMMI8.390e-4974.31Chd6 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S2DNW9_9STRA1.000e-4872.48Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S2EV94_9STRA7.800e-4875.93Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B8LC70_THAPS9.480e-4875.00Chromodomain-helicase (Fragment) n=1 Tax=Thalassio... [more]
W7TC43_9STRA1.980e-4777.06Chromodomain-helicase-dna-binding protein 7 n=2 Ta... [more]
A0A7R9YC09_9STRA4.950e-4777.98Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103781contigH-elongata_contig103781:1092..1878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.6e-49
Seed eggNOG ortholog2880.D7G873
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103781.319.1prot_H-elongata_contig103781.319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103781 1092..1848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.5934575-CDS-H-elongata_contig103781:1091..11781622929572.5934575-CDS-H-elongata_contig103781:1091..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103781 1092..1178 -
1691679075.6995833-CDS-H-elongata_contig103781:1091..11781691679075.6995833-CDS-H-elongata_contig103781:1091..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103781 1092..1178 -
1622929572.6206722-CDS-H-elongata_contig103781:1629..18481622929572.6206722-CDS-H-elongata_contig103781:1629..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103781 1630..1848 -
1691679075.713719-CDS-H-elongata_contig103781:1629..18481691679075.713719-CDS-H-elongata_contig103781:1629..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103781 1630..1848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.6373603-UTR-H-elongata_contig103781:1848..18781622929572.6373603-UTR-H-elongata_contig103781:1848..1878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103781 1849..1878 -
1691679075.725523-UTR-H-elongata_contig103781:1848..18781691679075.725523-UTR-H-elongata_contig103781:1848..1878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103781 1849..1878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103781.319.1

>prot_H-elongata_contig103781.319.1 ID=prot_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRA
GGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITRN
W*
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mRNA from alignment at H-elongata_contig103781:1092..1878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103781.319.1 ID=mRNA_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig103781:1092..1878- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGATCTTCAGTCAGTTCATCGGCATGTTGGACATGGTCCAGGA
GTTCCTAGCCCTCCGAGGTCATCGCCACGAGCGCCTCGATGGGCGCACCA
CCGGCAACGAGCGCCAGAAGTCCATAGATCGCTTCAACCGAGAGCCCAAC
AGCTTCGTCTTCCTTCTGTCCACGAGGGCAGGTGGCGTCGGCATCAATCT
CACCGCCGCAGACACGTGCATCATCTACGATAGCGACTGGAACCCTCAGG
TAGAGAGGTTTCTTTCGCTTGTCCCATCCATGTTCTATCGTGTTGCCTGT
CGTGTCGTATCGAACGAGTGGACGTAGACACGGTATGGAATTTCACCGCT
CGCGGGATGTGTTTTTTTGCAGAATCTGCGAGCGGGCAGGGCAACAGCAC
CGTGATGGGCTCCCGAGGGCAAGAGAGGCGACGTCATATCCAGTTGTTTA
TTATTGTTAAAAAATAAATCGAAAAGTAATTTTCCCGTGATCTTTTCCAC
CACAATCGGGTGTCGGGGCTCGGCATTTTCCACGTGTCCATGCCGCAGAG
TGATTCCCTGGCGCCGCGGTCGCTTCGACTGAAAACTTTCCGCCTTTGTT
CTTTTTGGCTGACCTTGTGGGCTTGGCTGGTTGGTTTTGCGCTTTGCCAT
ATTGTGGTGTATCGACGACGACGACCCCGCTTGTGCCTCGTGATTCTCAG
AACGATGTCCAAGCCATGGCTCGCTGTCACCGCATCGGTCAGACGAAGAG
CGTCATGGTGTACCGTCTCATAACGAGGAATTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig103781:1092..1878-

>mRNA_H-elongata_contig103781.319.1 ID=mRNA_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig103781:1092..1878- (Himanthalia elongata Himel1 dioecious)
ATGTTGGACATGGTCCAGGAGTTCCTAGCCCTCCGAGGTCATCGCCACGA
GCGCCTCGATGGGCGCACCACCGGCAACGAGCGCCAGAAGTCCATAGATC
GCTTCAACCGAGAGCCCAACAGCTTCGTCTTCCTTCTGTCCACGAGGGCA
GGTGGCGTCGGCATCAATCTCACCGCCGCAGACACGTGCATCATCTACGA
TAGCGACTGGAACCCTCAGATGTTGGACATGGTCCAGGAGTTCCTAGCCC
TCCGAGGTCATCGCCACGAGCGCCTCGATGGGCGCACCACCGGCAACGAG
CGCCAGAAGTCCATAGATCGCTTCAACCGAGAGCCCAACAGCTTCGTCTT
CCTTCTGTCCACGAGGGCAGGTGGCGTCGGCATCAATCTCACCGCCGCAG
ACACGTGCATCATCTACGATAGCGACTGGAACCCTCAGAACGATGTCCAA
GCCATGGCTCGCTGTCACCGCATCGGTCAGACGAAGAGCGTCATGGTGTA
CCGTCTCATAACGAGGAATTGGTGAAACGATGTCCAAGCCATGGCTCGCT
GTCACCGCATCGGTCAGACGAAGAGCGTCATGGTGTACCGTCTCATAACG
AGGAATTGGTGA
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