mRNA_H-elongata_contig146916.3183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146916.3183.1
Unique NamemRNA_H-elongata_contig146916.3183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.670e-30
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            + +  LTVI+ISDHHTRV+ GGGAQEAGGRVIGLLFGSQ+G DVSI+DA+EVACTAVG +G+ELNE L+EKQKDL
Sbjct:   36 IMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKDL 110
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.670e-28
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            + +  LTVI+ISDHHTRV+ GGGAQEAGGRVIGLLFGSQ+G DVSI+DA+EVACTAVG +G+ELNE L+EKQK+L
Sbjct:   36 IMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKNL 110
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A7S4A6I1_9STRA (COP9 signalosome complex subunit 6 (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6I1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.220e-8
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            + +  L ++ +SDH TRV++GG  Q AG  V+GLLFG Q GL+V + DAIEV  T    +  +++   +E+ K L
Sbjct:   45 VALHPLAIVGVSDHFTRVSVGGSRQGAGSPVVGLLFGMQRGLEVDVVDAIEVHLT----EATKVDAQFLEQSKAL 115
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A8J2WWX0_9STRA (Trehalase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWX0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.030e-7
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            + +  L ++ +SDH TRV++GG  Q AG  V+GLLFG Q GL+V + DAIEV  T    +  +++   +E+ K L
Sbjct:  704 VALHPLAIVGVSDHFTRVSVGGSRQGAGSPVVGLLFGMQRGLEVDVVDAIEVHLT----EATKVDAQFLEQSKAL 774
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN)

HSP 1 Score: 57.0 bits (136), Expect = 2.230e-6
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  287 IRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            +  L ++ +SDH TRV +GG        V+GLLFG Q GLDV++FDAIE++      DG +L+   ++KQ +L
Sbjct:  844 LHPLAIVGVSDHFTRVKLGGARVAPDSPVLGLLFGKQVGLDVAVFDAIELSMA----DG-KLDHDFLKKQAEL 911
[Close]
BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A7S4T8J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8J8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.610e-6
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEV 436
            L +  L +I ISDHHTRV  GG A      V+GLLFG Q GL VSI DA E+
Sbjct:   32 LKVHPLAIIGISDHHTRVMTGGSALPPNSPVVGLLFGYQEGLVVSILDAEEM 83
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BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.340e-6
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2 
Query:  287 IRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVE-LNEGLIEKQKDL 505
            +  L +I+ISDH T +  G   +  G +V+GLL+G Q GL+VSI DA E+  T +G DGV  +    +  QKDL
Sbjct:   28 LHPLAIITISDHFTCIESGASVKPRGSKVLGLLWGKQQGLEVSIMDAQELHYT-LGDDGVPVITAEKVNSQKDL 100
[Close]
BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A7S2HK81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK81_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.360e-6
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEV 436
            L +  L +I ISDHHTRV  GG A      V+GLLFG Q GL +SI DA E+
Sbjct:   33 LKVHPLAIIGISDHHTRVLTGGSALPPNSPVVGLLFGYQDGLTISILDAEEM 84
[Close]
BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: W7TEK2_9STRA (COP9 signalosome complex subunit 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.130e-5
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 2 
Query:  281 LTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTAVGKDGVELNEGLIEKQKDL 505
            + +  L +++I DH TRV +GG       R++G+LFG Q+GL VSI DA E+         V++  G + ++K+L
Sbjct:   56 VALHPLALVTICDHCTRVKVGGSLLPVTSRILGILFGVQNGLQVSITDAFELQYEITENGSVKIPAGYVNEKKEL 130
[Close]
BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Match: A0A7R9ZAP9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAP9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.570e-5
Identity = 36/91 (39.56%), Postives = 45/91 (49.45%), Query Frame = 2 
Query:  164 LSIIQDLPVSLNSRAPTSQTHASPNDVDHLHTDVVNYSPLTIRKLTVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEV 436
            ++I+ D+       A TS+T A                 L +  L +I ISDHHTRV  GG A      V+GLLFG Q GL VSI DA E+
Sbjct:    1 MTIMMDVDPPSRDAAATSETGAGGGSQQE--------KTLKVHPLAIIGISDHHTRVVTGGSALPKTAPVMGLLFGYQDGLTVSIVDAEEM 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146916.3183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KLY7_9PHAE1.670e-3077.33JAB_MPN domain-containing protein n=1 Tax=Ectocarp... [more]
D8LBH4_ECTSI1.670e-2876.00COP9 signalosome complex subunit 6 n=1 Tax=Ectocar... [more]
A0A7S4A6I1_9STRA6.220e-841.33COP9 signalosome complex subunit 6 (Fragment) n=1 ... [more]
A0A8J2WWX0_9STRA1.030e-741.33Trehalase n=1 Tax=Pelagomonas calceolata TaxID=356... [more]
F0Y0C1_AURAN2.230e-642.47Trehalase n=1 Tax=Aureococcus anophagefferens TaxI... [more]
A0A7S4T8J8_9STRA4.610e-655.77Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2B7N9_9STRA7.340e-643.24COP9 signalosome complex subunit 6 n=1 Tax=Dictyoc... [more]
A0A7S2HK81_9STRA7.360e-653.85Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
W7TEK2_9STRA1.130e-536.00COP9 signalosome complex subunit 6 n=2 Tax=Monodop... [more]
A0A7R9ZAP9_9STRA1.570e-539.56Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146916contigH-elongata_contig146916:943..1447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog2880.D8LBH4
Preferred nameCOPS6
KEGG rclassRC00049
KEGG koko:K01194,ko:K01410,ko:K12179
KEGG ReactionR00010
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0008150,GO:0008152,GO:0008180,GO:0009056,GO:0009057,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030163,GO:0030582,GO:0030584,GO:0030718,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0046983,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048608,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051603,GO:0051704,GO:0051716,GO:0060429,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0090304,GO:0098727,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG1310@1,KOG3050@2759
EC3.2.1.28,3.4.24.59
COG Functional cat.V
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03029,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.5050926-UTR-H-elongata_contig146916:942..10901622929872.5050926-UTR-H-elongata_contig146916:942..1090Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146916 943..1090 +
1691679190.2204432-UTR-H-elongata_contig146916:942..10901691679190.2204432-UTR-H-elongata_contig146916:942..1090Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146916 943..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.5161448-CDS-H-elongata_contig146916:1090..14471622929872.5161448-CDS-H-elongata_contig146916:1090..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146916 1091..1447 +
1691679190.2370627-CDS-H-elongata_contig146916:1090..14471691679190.2370627-CDS-H-elongata_contig146916:1090..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146916 1091..1447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146916.3183.1prot_H-elongata_contig146916.3183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146916 1091..1447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146916.3183.1

>prot_H-elongata_contig146916.3183.1 ID=prot_H-elongata_contig146916.3183.1|Name=mRNA_H-elongata_contig146916.3183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MPHVVLSIIQDLPVSLNSRAPTSQTHASPNDVDHLHTDVVNYSPLTIRKL
TVISISDHHTRVAMGGGAQEAGGRVIGLLFGSQHGLDVSIFDAIEVACTA
VGKDGVELNEGLIEKQKDL
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mRNA from alignment at H-elongata_contig146916:943..1447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146916.3183.1 ID=mRNA_H-elongata_contig146916.3183.1|Name=mRNA_H-elongata_contig146916.3183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig146916:943..1447+ (Himanthalia elongata Himel1 dioecious)
GTTAGGTTGCAGGGATCGTGGGGATGGTTTGACTCTACGCAAAAGTTGCA
TCTGCCGTTTTGCCTTAGTGCAGATCTTCCACGAGAAGACGTATGCACCA
CGCCCCTGAAACATATACAATTCGCTTGCCAGGAGCATGTATTAATGTAT
GCCCCACGTCGTCCTCTCTATAATTCAAGACCTGCCTGTATCGTTGAATT
CCAGGGCACCAACTTCCCAGACGCACGCTTCCCCAAATGATGTTGATCAT
CTCCACACTGATGTCGTGAATTATTCCCCTCTTACCATCCGAAAGTTGAC
AGTAATCTCGATATCAGACCACCACACAAGAGTGGCTATGGGAGGTGGGG
CTCAAGAGGCGGGGGGACGGGTCATCGGCCTCTTGTTCGGCTCTCAACAT
GGGCTGGACGTGAGCATCTTCGACGCGATTGAGGTTGCATGCACTGCTGT
GGGAAAGGACGGGGTGGAGCTGAACGAGGGGCTAATTGAGAAACAAAAGG
ACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig146916:943..1447+

>mRNA_H-elongata_contig146916.3183.1 ID=mRNA_H-elongata_contig146916.3183.1|Name=mRNA_H-elongata_contig146916.3183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig146916:943..1447+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCACGTCGTCCTCTCTATAATTCAAGACCTGCCTGTATCGTTGAA
TTCCAGGGCACCAACTTCCCAGACGCACGCTTCCCCAAATGATGTTGATC
ATCTCCACACTGATGTCGTGAATTATTCCCCTCTTACCATCCGAAAGTTG
ACAGTAATCTCGATATCAGACCACCACACAAGAGTGGCTATGGGAGGTGG
GGCTCAAGAGGCGGGGGGACGGGTCATCGGCCTCTTGTTCGGCTCTCAAC
ATGGGCTGGACGTGAGCATCTTCGACGCGATTGAGGTTGCATGCACTGCT
GTGGGAAAGGACGGGGTGGAGCTGAACGAGGGGCTAATTGAGAAACAAAA
GGACCTCATGCCCCACGTCGTCCTCTCTATAATTCAAGACCTGCCTGTAT
CGTTGAATTCCAGGGCACCAACTTCCCAGACGCACGCTTCCCCAAATGAT
GTTGATCATCTCCACACTGATGTCGTGAATTATTCCCCTCTTACCATCCG
AAAGTTGACAGTAATCTCGATATCAGACCACCACACAAGAGTGGCTATGG
GAGGTGGGGCTCAAGAGGCGGGGGGACGGGTCATCGGCCTCTTGTTCGGC
TCTCAACATGGGCTGGACGTGAGCATCTTCGACGCGATTGAGGTTGCATG
CACTGCTGTGGGAAAGGACGGGGTGGAGCTGAACGAGGGGCTAATTGAGA
AACAAAAGGACCTC
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