mRNA_H-elongata_contig14689.3181.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 1.720e-128 Identity = 201/313 (64.22%), Postives = 244/313 (77.96%), Query Frame = 3
Query: 441 SARGKAPSTTQVPANGFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDS--GFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDACPQVSTW 1373
+AR ++ ++V GFWK FPLFR Y PDPAAVVPR G +A +RE ESRLRFFRAAGR+IA+S++ +PLGVVMPEA W+VLLG TPTWE+ CGRD QYL+SM KVLAH+FG GE GNG+EL+FS+SER +GKV ++PLLAGGE KRVTDKNK++FVNLATRR LGGAE+A+AA+RSG+ DVIPKNLLS+LLP EVA+IVSGPQG V+L+ L+ NVWYV+S GF H+ ++W W+W ++L E +R+LLLFWSGSSRVPPFGFEDDALNEDHRWAI KG + CP STW
Sbjct: 920 AARDRSRKVSEV--AGFWKQFPLFRRYEPDPAAVVPRAAG-----------EAGVNSANDREGMESRLRFFRAAGRIIAMSVVSGSPLGVVMPEAVWSVLLGSTPTWEDCCGRDTQYLESMRKVLAHEFGKGEGGNGMELYFSVSERGIDGKVTDVPLLAGGENKRVTDKNKQEFVNLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSIRWFWEWTNELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAANVCPTASTW 1219
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 2.340e-125 Identity = 199/297 (67.00%), Postives = 233/297 (78.45%), Query Frame = 3
Query: 486 GFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYV--DSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDACPQVST 1370
GFWK FPLFR Y PDPAAVVPR G +A +RE ESRLRFFRAAGR+IA+S++ +PLGVVMPEA W+VLLG TPTWEE CGRD QYL+SM KVLAH+FG GE GNG+EL+FS+SER +GKV ++PLLAGGE KRVTD NK++FVNLATRR LGGAE+AIAA+RSG+ DVIPKNLLS+LLP EVA+IVSGPQG V+L+ L+ NVWYV D GF HR ++W W+WA++L E +R+LLLFWSGSSRVPPFGFEDDALNEDH WAI KG + CP ST
Sbjct: 1112 GFWKQFPLFRRYEPDPAAVVPRAAG-----------EAGVNSANDREGMESRLRFFRAAGRIIAMSVVSGSPLGVVMPEAIWSVLLGSTPTWEECCGRDTQYLESMRKVLAHEFGKGEGGNGMELYFSVSERGVDGKVADVPLLAGGENKRVTDNNKQEFVNLATRRRALGGAEKAIAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSKLRTNVWYVEGDEGFGCSHRSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHSWAIDKGPAANVCPTAST 1397
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A6G0XGS7_9STRA (HECT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGS7_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.770e-32 Identity = 91/250 (36.40%), Postives = 134/250 (53.60%), Query Frame = 3
Query: 651 FRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFF------SISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDA----CPQVST 1370
+R GRL+ L+L + PLGV+ P AFW V+ G TWE+Y + Y +S+ +L H F + LE++F ++SE S+ EI L G+TKRVT+ NKK FV+L+ R+ + + A + G+ DVI K L P E+ ++V GP ++DL L+ +V Y QH + W ++++E + RRLLLFWSGSS P FGF+ N W+I +D+ CPQ T
Sbjct: 858 YRCLGRLMGLALRHQAPLGVLFPLAFWKVVFGERVTWEDYTAHNPDYQKSLRMILDHDF---DADPTLEMYFETCGSITVSESNSKIYTAEIELELNGKTKRVTNANKKRFVDLSAARY-FCNSMPLLNAFQKGVLDVIYKKDLKWFSPEELQSVVQGPV-TIDLKALQKHVHYTRPAHS-QHPTIAHFWAVVEEIDESTLRRLLLFWSGSSLPPLFGFDSLGSN----WSIKLMSRDDSTQWPCPQAVT 1097
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A7S3UXC4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXC4_HETAK) HSP 1 Score: 130 bits (326), Expect = 2.430e-30 Identity = 102/304 (33.55%), Postives = 149/304 (49.01%), Query Frame = 3
Query: 477 PANGFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQ----HRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAIT--KGDPEDACPQVST 1370
P + FW P F V+PR G ++ + R+F+ AGR++ LS+ A PLGV +P+A WA++LG PT EE D +S+ +VLA + E+ L+L F++ + GK E L GG VT ++ ++ L RR GAE+ +AA+R G+ DV+P LL+VL P+E+ V+GP +VDLA L+ YV +G + H + + W+ A L + R LL FWSGS+ PPF D E+ W IT D PQ +T
Sbjct: 34 PESDFWTFAPFFEKVDSRSPLVIPRAYG---------------------DDFDQVSRYFQTAGRVLGLSIKQAAPLGVRIPKAVWAIILGREPTIEECLAEDPVTARSLRQVLALENE--EELAALDLTFAVP--LPGGKEAE--LKPGGAAAPVTLASRGEYARLFARRAATRGAEREVAALRLGLTDVVPPGLLAVLHPAEIYEAVAGPD-TVDLARLERATEYVINGEVNRGSGAHPLARAFWEVAAALAPPALRALLRFWSGSAH-PPFAGAD---REEEVWTITFDHSDNPSNLPQATT 305
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A7S2RXL3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXL3_9STRA) HSP 1 Score: 119 bits (298), Expect = 8.930e-27 Identity = 86/258 (33.33%), Postives = 122/258 (47.29%), Query Frame = 3
Query: 660 AGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLA----HKFGPGEDGNGLE-------LFFSISERIS-EGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWAD-DLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDP--------EDACPQVST 1370
AGRL+ S+ + PLGV +P A WA LLG +W +YC D +Y + + VL + G G G E L FS +E+ G + E+ L+ G V N + LA RR L G + + MR+G+ VIP +LLS+ SE++ + +G SVD+ + Y D + +H +Q W DL E +R+LLLFWSG S FGF L D W I + +D CP+ T
Sbjct: 12 AGRLLGFSIRHNVPLGVALPPAIWAELLGQRASWSDYCLYDEEYRRHISSVLTLAQQYMRDGGVPGVGTEDPVAALYLRFSATEKDPVSGALSEVDLVPRGRDLEVHSGNIHAYAFLACRRRLLRGTDDRLQVMRTGLMSVIPNSLLSIFDASELSHVTAGSL-SVDVRLWREGTVY-DRPYHDKHPTIQHFWHVVQHDLTEPQRRKLLLFWSGISVPSSFGFTTSDLAGDEPWRIERAFVPYHASSFRDDWCPEAVT 267
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A1V9ZEA6_9STRA (Hect domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEA6_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.060e-22 Identity = 80/231 (34.63%), Postives = 115/231 (49.78%), Query Frame = 3
Query: 645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERIS-EGKVV--EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAI 1328
R F GRL+ L++ + LG P AFW +L G W CG + +S+ +LA D EL F R+ G +V ++ L G VT++NK FV L RH G A+AA+R G V+P L+VL +E+A++V+GP+ +DLA L+A+V Y +H + W L +LLLFWSGS R PPFGF + ++ W+I
Sbjct: 739 RLFMCLGRLLGLAVRHGMVLGARFPAAFWPLLRGEAVPWSALCGSNAVLRRSLEALLATDV----DAAPGELVFETCARVQWSGAMVAAQVELQPNGFATPVTNQNKAAFVRLLAERHACG-CPVALAAVRKGFYHVLPPTELAVLRSTELASLVAGPE-IIDLAQLQASVAYGRLA-SPKHPTIVAFWAVVHGLLPGDVEKLLLFWSGSGRPPPFGFAPEHADQ-VAWSI 961
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A067BRP0_SAPPC (HECT domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRP0_SAPPC) HSP 1 Score: 108 bits (270), Expect = 1.970e-21 Identity = 75/232 (32.33%), Postives = 121/232 (52.16%), Query Frame = 3
Query: 645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTP-TWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVV---EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAI 1328
+ +R GRL LS+ + LG P FW VLL + +W + D +S+ VLAH F E + LEL F +R+ V+ ++ L G VT+ NK+++V LA H A+ A+R G+ DV+PK +++L P E+ ++ G + ++D+ L+A+ Y G +H ++ W + L ++R LL+FWSGSS P FGF A +++ W+I
Sbjct: 746 KLYRCLGRLFGLSVRHGIVLGARFPLVFWHVLLQTSSMSWTDLVADDPVLRRSLDAVLAHDF---ERTSSLELAFETCDRVEYNGVILTAQVELTPHGFETPVTNANKEEYV-LALAMHHFCSNCDALDALRDGLFDVVPKREMALLRPDELQRLLGGDE-ALDMTALQASTTYGRLG-SAEHPTIRHFWAVVEALPLATQRELLVFWSGSSLPPLFGF---AHSDEVAWSI 968
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A261BYA1_9PELO (HECT-type E3 ubiquitin transferase (Fragment) n=3 Tax=Caenorhabditis TaxID=6237 RepID=A0A261BYA1_9PELO) HSP 1 Score: 103 bits (258), Expect = 5.720e-20 Identity = 70/249 (28.11%), Postives = 129/249 (51.81%), Query Frame = 3
Query: 627 EAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNED-HRWAITKGDPEDACPQVST 1370
E+E ++ + GR++AL++++ + V F+ L + +Y D ++ +SM +L + D +GLE+ F S ++ GK+ E+ LL+GGE++ VT+ NK +F+ L ++ + G E+ + + ++ +LLS L SE+ I+SG +DL + N Y G+ H V++W W+ + + + + LLLF +GSS VP GF N++ ++ I K + P+ T
Sbjct: 545 ESEKEKKWLKLCGRVLALAIIHRCYIDVFFSNIFYKFLQKKSIDLLDYKESDAEFYKSMHWLLEN------DVDGLEMSFVYSSMVN-GKLTELELLSGGESRNVTNSNKTEFIELMCQKKAIRGIEKPLEILLEAFNQILTLDLLSSLHASELKRILSGSL-ELDLNDWRTNTIY-KGGYSDCHIVIEWFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSALRGNDEISKFCIEKWGDATSLPRYCT 784
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: T0PVX2_SAPDV (HECT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PVX2_SAPDV) HSP 1 Score: 103 bits (257), Expect = 8.730e-20 Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 3
Query: 645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLL-GMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVV---EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGF 1289
+ +R GRL L++ + LG P FW VL+ T W + D +S+ LAH F D L F + + + + ++ L G VT+ NK+ +V LA H A+ A+R G+ DV+PK +++L P E+ +++G Q ++D+A L+A+V Y G +H ++ W D + E ++R LL+FWSGSS P FGF
Sbjct: 787 KLYRCLGRLFGLAVRHGIVLGARFPLVFWQVLMEAPTVQWTDLVSDDPALRRSLEATLAHDFATPWD-----LTFEMCDHVEYNGAMLTAQVELQPRGFETPVTNDNKEAYV-LALAMHHFCSNRDALDAVRVGLYDVVPKREIALLRPDELQRVLAGDQ-ALDMAALQAHVTYGRHG-SAEHPTIRHFWAVVDGMAEPTQRELLVFWSGSSLPPLFGF 997
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A4S6X1_OSTLU (HECT domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6X1_OSTLU) HSP 1 Score: 100 bits (249), Expect = 1.990e-19 Identity = 67/216 (31.02%), Postives = 108/216 (50.00%), Query Frame = 3
Query: 642 LRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGF 1289
L +FR GRL+ +L L + LLG T+E+ G D Y +S+ +L + +G F + E +V + L G VTD NK ++VNL T + +AA+ G +V+P+ +S+L SE+ ++SG +D+ L+AN Y +GF + + +QW WD ++N+E RLL+F +G+S+VP GF
Sbjct: 137 LSYFRFVGRLVGKALFDDILLNAYFTRPIYKHLLGQQLTYEDMEGVDPDYYKSLKWMLENSV----EGVMEYTFSDTTSYFGETQVHD--LTENGRNIAVTDANKFEYVNLITAHRMTNAVKDQLAALVKGFEEVVPRETISILNASELELLISGTP-DIDVEDLRANTEY--TGFTVGSKQIQWFWDVVREMNKEDLARLLMFCTGTSKVPLDGF 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14689.3181.1 >prot_H-elongata_contig14689.3181.1 ID=prot_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=449bp MLAAVFSTQRSPYDPSNNDAVLSSSQPGVGSADAPTSQEDTASRKVATAPback to top mRNA from alignment at H-elongata_contig14689:2296..5387+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14689.3181.1 ID=mRNA_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3092bp|location=Sequence derived from alignment at H-elongata_contig14689:2296..5387+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14689:2296..5387+ >mRNA_H-elongata_contig14689.3181.1 ID=mRNA_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at H-elongata_contig14689:2296..5387+ (Himanthalia elongata Himel1 dioecious)back to top |