mRNA_H-elongata_contig14689.3181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14689.3181.1
Unique NamemRNA_H-elongata_contig14689.3181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 1.720e-128
Identity = 201/313 (64.22%), Postives = 244/313 (77.96%), Query Frame = 3
Query:  441 SARGKAPSTTQVPANGFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDS--GFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDACPQVSTW 1373
            +AR ++   ++V   GFWK FPLFR Y PDPAAVVPR  G                +A +RE  ESRLRFFRAAGR+IA+S++  +PLGVVMPEA W+VLLG TPTWE+ CGRD QYL+SM KVLAH+FG GE GNG+EL+FS+SER  +GKV ++PLLAGGE KRVTDKNK++FVNLATRR  LGGAE+A+AA+RSG+ DVIPKNLLS+LLP EVA+IVSGPQG V+L+ L+ NVWYV+S  GF   H+ ++W W+W ++L E  +R+LLLFWSGSSRVPPFGFEDDALNEDHRWAI KG   + CP  STW
Sbjct:  920 AARDRSRKVSEV--AGFWKQFPLFRRYEPDPAAVVPRAAG-----------EAGVNSANDREGMESRLRFFRAAGRIIAMSVVSGSPLGVVMPEAVWSVLLGSTPTWEDCCGRDTQYLESMRKVLAHEFGKGEGGNGMELYFSVSERGIDGKVTDVPLLAGGENKRVTDKNKQEFVNLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSIRWFWEWTNELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAANVCPTASTW 1219          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.340e-125
Identity = 199/297 (67.00%), Postives = 233/297 (78.45%), Query Frame = 3
Query:  486 GFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYV--DSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDACPQVST 1370
            GFWK FPLFR Y PDPAAVVPR  G                +A +RE  ESRLRFFRAAGR+IA+S++  +PLGVVMPEA W+VLLG TPTWEE CGRD QYL+SM KVLAH+FG GE GNG+EL+FS+SER  +GKV ++PLLAGGE KRVTD NK++FVNLATRR  LGGAE+AIAA+RSG+ DVIPKNLLS+LLP EVA+IVSGPQG V+L+ L+ NVWYV  D GF   HR ++W W+WA++L E  +R+LLLFWSGSSRVPPFGFEDDALNEDH WAI KG   + CP  ST
Sbjct: 1112 GFWKQFPLFRRYEPDPAAVVPRAAG-----------EAGVNSANDREGMESRLRFFRAAGRIIAMSVVSGSPLGVVMPEAIWSVLLGSTPTWEECCGRDTQYLESMRKVLAHEFGKGEGGNGMELYFSVSERGVDGKVADVPLLAGGENKRVTDNNKQEFVNLATRRRALGGAEKAIAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSKLRTNVWYVEGDEGFGCSHRSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHSWAIDKGPAANVCPTAST 1397          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A6G0XGS7_9STRA (HECT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGS7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.770e-32
Identity = 91/250 (36.40%), Postives = 134/250 (53.60%), Query Frame = 3
Query:  651 FRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFF------SISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDA----CPQVST 1370
            +R  GRL+ L+L +  PLGV+ P AFW V+ G   TWE+Y   +  Y +S+  +L H F   +    LE++F      ++SE  S+    EI L   G+TKRVT+ NKK FV+L+  R+    +   + A + G+ DVI K  L    P E+ ++V GP  ++DL  L+ +V Y       QH  +   W   ++++E + RRLLLFWSGSS  P FGF+    N    W+I     +D+    CPQ  T
Sbjct:  858 YRCLGRLMGLALRHQAPLGVLFPLAFWKVVFGERVTWEDYTAHNPDYQKSLRMILDHDF---DADPTLEMYFETCGSITVSESNSKIYTAEIELELNGKTKRVTNANKKRFVDLSAARY-FCNSMPLLNAFQKGVLDVIYKKDLKWFSPEELQSVVQGPV-TIDLKALQKHVHYTRPAHS-QHPTIAHFWAVVEEIDESTLRRLLLFWSGSSLPPLFGFDSLGSN----WSIKLMSRDDSTQWPCPQAVT 1097          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A7S3UXC4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXC4_HETAK)

HSP 1 Score: 130 bits (326), Expect = 2.430e-30
Identity = 102/304 (33.55%), Postives = 149/304 (49.01%), Query Frame = 3
Query:  477 PANGFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREEAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQ----HRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAIT--KGDPEDACPQVST 1370
            P + FW   P F         V+PR  G                     ++ +   R+F+ AGR++ LS+  A PLGV +P+A WA++LG  PT EE    D    +S+ +VLA +    E+   L+L F++   +  GK  E  L  GG    VT  ++ ++  L  RR    GAE+ +AA+R G+ DV+P  LL+VL P+E+   V+GP  +VDLA L+    YV +G   +    H + +  W+ A  L   + R LL FWSGS+  PPF   D    E+  W IT    D     PQ +T
Sbjct:   34 PESDFWTFAPFFEKVDSRSPLVIPRAYG---------------------DDFDQVSRYFQTAGRVLGLSIKQAAPLGVRIPKAVWAIILGREPTIEECLAEDPVTARSLRQVLALENE--EELAALDLTFAVP--LPGGKEAE--LKPGGAAAPVTLASRGEYARLFARRAATRGAEREVAALRLGLTDVVPPGLLAVLHPAEIYEAVAGPD-TVDLARLERATEYVINGEVNRGSGAHPLARAFWEVAAALAPPALRALLRFWSGSAH-PPFAGAD---REEEVWTITFDHSDNPSNLPQATT 305          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A7S2RXL3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXL3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.930e-27
Identity = 86/258 (33.33%), Postives = 122/258 (47.29%), Query Frame = 3
Query:  660 AGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLA----HKFGPGEDGNGLE-------LFFSISERIS-EGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWAD-DLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDP--------EDACPQVST 1370
            AGRL+  S+ +  PLGV +P A WA LLG   +W +YC  D +Y + +  VL     +    G  G G E       L FS +E+    G + E+ L+  G    V   N   +  LA RR  L G +  +  MR+G+  VIP +LLS+   SE++ + +G   SVD+   +    Y D  +  +H  +Q  W     DL E  +R+LLLFWSG S    FGF    L  D  W I +           +D CP+  T
Sbjct:   12 AGRLLGFSIRHNVPLGVALPPAIWAELLGQRASWSDYCLYDEEYRRHISSVLTLAQQYMRDGGVPGVGTEDPVAALYLRFSATEKDPVSGALSEVDLVPRGRDLEVHSGNIHAYAFLACRRRLLRGTDDRLQVMRTGLMSVIPNSLLSIFDASELSHVTAGSL-SVDVRLWREGTVY-DRPYHDKHPTIQHFWHVVQHDLTEPQRRKLLLFWSGISVPSSFGFTTSDLAGDEPWRIERAFVPYHASSFRDDWCPEAVT 267          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A1V9ZEA6_9STRA (Hect domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEA6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.060e-22
Identity = 80/231 (34.63%), Postives = 115/231 (49.78%), Query Frame = 3
Query:  645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERIS-EGKVV--EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAI 1328
            R F   GRL+ L++ +   LG   P AFW +L G    W   CG +    +S+  +LA       D    EL F    R+   G +V  ++ L   G    VT++NK  FV L   RH  G    A+AA+R G   V+P   L+VL  +E+A++V+GP+  +DLA L+A+V Y       +H  +   W     L      +LLLFWSGS R PPFGF  +  ++   W+I
Sbjct:  739 RLFMCLGRLLGLAVRHGMVLGARFPAAFWPLLRGEAVPWSALCGSNAVLRRSLEALLATDV----DAAPGELVFETCARVQWSGAMVAAQVELQPNGFATPVTNQNKAAFVRLLAERHACG-CPVALAAVRKGFYHVLPPTELAVLRSTELASLVAGPE-IIDLAQLQASVAYGRLA-SPKHPTIVAFWAVVHGLLPGDVEKLLLFWSGSGRPPPFGFAPEHADQ-VAWSI 961          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A067BRP0_SAPPC (HECT domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRP0_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 1.970e-21
Identity = 75/232 (32.33%), Postives = 121/232 (52.16%), Query Frame = 3
Query:  645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTP-TWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVV---EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAI 1328
            + +R  GRL  LS+ +   LG   P  FW VLL  +  +W +    D    +S+  VLAH F   E  + LEL F   +R+    V+   ++ L   G    VT+ NK+++V LA   H       A+ A+R G+ DV+PK  +++L P E+  ++ G + ++D+  L+A+  Y   G   +H  ++  W   + L   ++R LL+FWSGSS  P FGF   A +++  W+I
Sbjct:  746 KLYRCLGRLFGLSVRHGIVLGARFPLVFWHVLLQTSSMSWTDLVADDPVLRRSLDAVLAHDF---ERTSSLELAFETCDRVEYNGVILTAQVELTPHGFETPVTNANKEEYV-LALAMHHFCSNCDALDALRDGLFDVVPKREMALLRPDELQRLLGGDE-ALDMTALQASTTYGRLG-SAEHPTIRHFWAVVEALPLATQRELLVFWSGSSLPPLFGF---AHSDEVAWSI 968          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A0A261BYA1_9PELO (HECT-type E3 ubiquitin transferase (Fragment) n=3 Tax=Caenorhabditis TaxID=6237 RepID=A0A261BYA1_9PELO)

HSP 1 Score: 103 bits (258), Expect = 5.720e-20
Identity = 70/249 (28.11%), Postives = 129/249 (51.81%), Query Frame = 3
Query:  627 EAESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGFEDDALNED-HRWAITKGDPEDACPQVST 1370
            E+E   ++ +  GR++AL++++   + V     F+  L   +    +Y   D ++ +SM  +L +      D +GLE+ F  S  ++ GK+ E+ LL+GGE++ VT+ NK +F+ L  ++  + G E+ +  +      ++  +LLS L  SE+  I+SG    +DL   + N  Y   G+   H V++W W+  + +  + +  LLLF +GSS VP  GF     N++  ++ I K     + P+  T
Sbjct:  545 ESEKEKKWLKLCGRVLALAIIHRCYIDVFFSNIFYKFLQKKSIDLLDYKESDAEFYKSMHWLLEN------DVDGLEMSFVYSSMVN-GKLTELELLSGGESRNVTNSNKTEFIELMCQKKAIRGIEKPLEILLEAFNQILTLDLLSSLHASELKRILSGSL-ELDLNDWRTNTIY-KGGYSDCHIVIEWFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSALRGNDEISKFCIEKWGDATSLPRYCT 784          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: T0PVX2_SAPDV (HECT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PVX2_SAPDV)

HSP 1 Score: 103 bits (257), Expect = 8.730e-20
Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 3
Query:  645 RFFRAAGRLIALSLMYATPLGVVMPEAFWAVLL-GMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVV---EIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGF 1289
            + +R  GRL  L++ +   LG   P  FW VL+   T  W +    D    +S+   LAH F    D     L F + + +     +   ++ L   G    VT+ NK+ +V LA   H       A+ A+R G+ DV+PK  +++L P E+  +++G Q ++D+A L+A+V Y   G   +H  ++  W   D + E ++R LL+FWSGSS  P FGF
Sbjct:  787 KLYRCLGRLFGLAVRHGIVLGARFPLVFWQVLMEAPTVQWTDLVSDDPALRRSLEATLAHDFATPWD-----LTFEMCDHVEYNGAMLTAQVELQPRGFETPVTNDNKEAYV-LALAMHHFCSNRDALDAVRVGLYDVVPKREIALLRPDELQRVLAGDQ-ALDMAALQAHVTYGRHG-SAEHPTIRHFWAVVDGMAEPTQRELLVFWSGSSLPPLFGF 997          
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Match: A4S6X1_OSTLU (HECT domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6X1_OSTLU)

HSP 1 Score: 100 bits (249), Expect = 1.990e-19
Identity = 67/216 (31.02%), Postives = 108/216 (50.00%), Query Frame = 3
Query:  642 LRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGRDVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGETKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLPSEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEESKRRLLLFWSGSSRVPPFGF 1289
            L +FR  GRL+  +L     L        +  LLG   T+E+  G D  Y +S+  +L +      +G     F   +    E +V +  L   G    VTD NK ++VNL T        +  +AA+  G  +V+P+  +S+L  SE+  ++SG    +D+  L+AN  Y  +GF +  + +QW WD   ++N+E   RLL+F +G+S+VP  GF
Sbjct:  137 LSYFRFVGRLVGKALFDDILLNAYFTRPIYKHLLGQQLTYEDMEGVDPDYYKSLKWMLENSV----EGVMEYTFSDTTSYFGETQVHD--LTENGRNIAVTDANKFEYVNLITAHRMTNAVKDQLAALVKGFEEVVPRETISILNASELELLISGTP-DIDVEDLRANTEY--TGFTVGSKQIQWFWDVVREMNKEDLARLLMFCTGTSKVPLDGF 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14689.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKA6_ECTSI1.720e-12864.22HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JX10_9PHAE2.340e-12567.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6G0XGS7_9STRA2.770e-3236.40HECT domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A7S3UXC4_HETAK2.430e-3033.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RXL3_9STRA8.930e-2733.33HECT-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A1V9ZEA6_9STRA1.060e-2234.63Hect domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A067BRP0_SAPPC1.970e-2132.33HECT domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A261BYA1_9PELO5.720e-2028.11HECT-type E3 ubiquitin transferase (Fragment) n=3 ... [more]
T0PVX2_SAPDV8.730e-2031.96HECT domain-containing protein n=1 Tax=Saprolegnia... [more]
A4S6X1_OSTLU1.990e-1931.02HECT domain-containing protein n=1 Tax=Ostreococcu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14689contigH-elongata_contig14689:2296..5387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.8
Seed ortholog evalue4.2e-112
Seed eggNOG ortholog2880.D8LKA6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size1376
Cds size1347
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.292804-UTR-H-elongata_contig14689:2295..23241622929872.292804-UTR-H-elongata_contig14689:2295..2324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14689 2296..2324 +
1691679190.1369174-UTR-H-elongata_contig14689:2295..23241691679190.1369174-UTR-H-elongata_contig14689:2295..2324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14689 2296..2324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.307146-CDS-H-elongata_contig14689:2324..29421622929872.307146-CDS-H-elongata_contig14689:2324..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 2325..2942 +
1691679190.1460392-CDS-H-elongata_contig14689:2324..29421691679190.1460392-CDS-H-elongata_contig14689:2324..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 2325..2942 +
1622929872.3235161-CDS-H-elongata_contig14689:3268..33641622929872.3235161-CDS-H-elongata_contig14689:3268..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 3269..3364 +
1691679190.15363-CDS-H-elongata_contig14689:3268..33641691679190.15363-CDS-H-elongata_contig14689:3268..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 3269..3364 +
1622929872.338386-CDS-H-elongata_contig14689:3758..39111622929872.338386-CDS-H-elongata_contig14689:3758..3911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 3759..3911 +
1691679190.1612475-CDS-H-elongata_contig14689:3758..39111691679190.1612475-CDS-H-elongata_contig14689:3758..3911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 3759..3911 +
1622929872.354687-CDS-H-elongata_contig14689:4340..45291622929872.354687-CDS-H-elongata_contig14689:4340..4529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 4341..4529 +
1691679190.1715024-CDS-H-elongata_contig14689:4340..45291691679190.1715024-CDS-H-elongata_contig14689:4340..4529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 4341..4529 +
1622929872.3751388-CDS-H-elongata_contig14689:4861..49261622929872.3751388-CDS-H-elongata_contig14689:4861..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 4862..4926 +
1691679190.1794295-CDS-H-elongata_contig14689:4861..49261691679190.1794295-CDS-H-elongata_contig14689:4861..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 4862..4926 +
1622929872.392803-CDS-H-elongata_contig14689:5161..53871622929872.392803-CDS-H-elongata_contig14689:5161..5387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 5162..5387 +
1691679190.1871552-CDS-H-elongata_contig14689:5161..53871691679190.1871552-CDS-H-elongata_contig14689:5161..5387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 5162..5387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14689.3181.1prot_H-elongata_contig14689.3181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14689 2325..5387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14689.3181.1

>prot_H-elongata_contig14689.3181.1 ID=prot_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=449bp
MLAAVFSTQRSPYDPSNNDAVLSSSQPGVGSADAPTSQEDTASRKVATAP
ASASAPAPGRCAPAKLNPMASPFTAPGLSSMNSNATHKAACNRGGGSSSS
GVHGQSAVSMGRDGSAAVPLPSAQTSRPPPASAPALRSARGKAPSTTQVP
ANGFWKCFPLFRVYAPDPAAVVPREEGLRRAMVTGSGRSGSQETAAEREE
AESRLRFFRAAGRLIALSLMYATPLGVVMPEAFWAVLLGMTPTWEEYCGR
DVQYLQSMGKVLAHKFGPGEDGNGLELFFSISERISEGKVVEIPLLAGGE
TKRVTDKNKKDFVNLATRRHGLGGAEQAIAAMRSGIGDVIPKNLLSVLLP
SEVAAIVSGPQGSVDLATLKANVWYVDSGFDMQHRVLQWLWDWADDLNEE
SKRRLLLFWSGSSRVPPFGFEDDALNEDHRWAITKGDPEDACPQVSTW*
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mRNA from alignment at H-elongata_contig14689:2296..5387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14689.3181.1 ID=mRNA_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3092bp|location=Sequence derived from alignment at H-elongata_contig14689:2296..5387+ (Himanthalia elongata Himel1 dioecious)
GAGACGGCCCGTTGCGCGAGCTGATCGACATGCTGGCTGCCGTGTTTAGC ACTCAACGTTCTCCTTATGACCCCTCGAACAATGACGCTGTGCTGAGCTC GAGTCAGCCCGGAGTGGGCAGCGCCGACGCCCCCACCTCACAAGAGGATA CAGCTTCGCGAAAGGTGGCAACAGCTCCGGCATCTGCCTCCGCCCCCGCC CCCGGCAGATGCGCCCCAGCGAAGCTGAACCCTATGGCCTCGCCCTTCAC CGCACCGGGATTATCATCGATGAACAGTAACGCTACACACAAGGCGGCAT GCAACCGTGGCGGCGGCAGCAGCAGCAGCGGTGTTCATGGGCAGTCGGCG GTGTCCATGGGTAGGGATGGTTCGGCCGCAGTACCGCTCCCTAGCGCACA GACCTCTAGGCCACCCCCGGCGTCAGCGCCAGCGCTTCGATCCGCAAGAG GGAAGGCCCCGTCAACGACACAAGTGCCGGCCAACGGCTTCTGGAAGTGC TTTCCGCTGTTTAGGGTATACGCACCGGATCCTGCCGCGGTCGTGCCGCG TGAGGAGGGGTTGAGAAGGGCGATGGTGACGGGCAGTGGTAGAAGCGGGA GTCAAGAAACGGCGGCTGAGAGGGAAGAAGCCGAGAGCCGTCTAAGGGTA GGTTGTATCTTACACAGCACTGATAAGAATTATGTACTGTGTGGCTTCCG TGATGCGGTTTTCCGATACTTTTCCCTTTAGTGTCACTTACTACAGTATG TAATAAATCAAACGATGCATGTCATGAGCAAAGCTTGAATATTTTACGCG CGGATACCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCNNNNNNNNNNACAGCCCATCCAGCCAATGCTGAAACTTTT TCTCCCTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCTCTCCCT CCCTTCCTATAATCGGCGCGAAGTTCTTCCGCGCCGCGGGCCGTCTGATA GCGCTCAGCTTGATGTACGCCACCCCGCTTGGCGTGGTAATGCCGGAGGC GTTCTGGGCCGTGCTCTTGGTGAGATATTATTTCTTCCACTCGCTCACGA GGTCTATTAATAGATAAAGCTATCATGCTGCCTGGTAGATGACTCGCTAG ATGATAATATTCGTCCGTGACAACGAAGAGCGTACGTGGCCACGCGATCT TGTTTCGGGCTTATGTTTTATGGGTAAGCGTTACGTTTTCGCGCGCGCGC ACGGGCGGTATACAACCCGGAGCTTCGGATTGATATTTTGTGGTGCAGCG TAATTCTTTGCATCTTCCGGGTGTGATGACACTGGGCAATAGTAAAAACA CCGTTGAGCAACTCGGGGAAAGAAAGGTGTCGGTGCGGATTGATTCGATG AGTGCAGCCTTCTTGGCGGAACCGAATGAAATCCGATATGTTCGATGATC CCGTGGTCTCCAGGGGATGACACCGACATGGGAGGAATACTGCGGGCGCG ACGTGCAGTACCTTCAGTCAATGGGGAAGGTGCTGGCGCATAAGTTTGGC CCCGGCGAGGACGGTAACGGATTGGAGCTGTTCTTCAGCATTTCTGAGAG GATATCGGAAGGAAAGGTAATAGAAAAATGTCACCACTGCCTATAATCAA AAGTGTGTGGAACTCTCTTGTAAGAGGACCGAGGGAGAGGGGGGCTCGTA GTCATCTGCTTGTGTATCGGTTACATCCCGCCGTCCTCTACCCCTTCCTT TGCCTCCTAGTGTACGTGTACGGCTGCATAATTATTGCCGTGGGTGGTCT GTCGCCGCACGATCTCGGTGGACTTTCGCTTTCCCTCTCTGGTTTCGTGT TCCCACTGCGGGGGTGGTCTTTTTGCAGTTCATGGAACGCCGCGGTCTAT TTGCGCATCTCCAAGAAGGTATAATATGACGACACGCAATGTGATGCGAT ACAATGCTGCTATTCCATCTCGTGAACACGCGATTATTCTTCCTATCCTC CCTGTCCCCCCCCCGCCCACCGGTCTGGGACGACGCCGTGTAAAGGTTGT GGAAATCCCGCTGCTTGCGGGGGGCGAAACAAAGCGCGTCACAGACAAAA ACAAGAAGGACTTCGTTAACCTGGCCACGAGGAGGCACGGCCTCGGTGGG GCTGAACAGGCGATCGCGGCAATGCGTTCGGGGATCGGGGACGTGATACC CAAAAACCTACTTTCAGTGCTGCTCCCCTCCGAGGTTGGTAGACTCATGT GAATGGTAGACGGGATGCATATCTGTTACGAAGAAGATACAATGAAGTGC TAAGTGGTGGAGAGGGCATGAAGAAGTTGCGCAGCGACCGATGCCTTAGG CGGCAACATTATTTCGTGCGTATCCAGTGCCAAGGGCATCTTCAAGTCCT ACTTCGCGAGTGTTTCGGCTGTCTCCGCGGGCGCGGTCCCGGGGAGTATT ACATGTTTGGCCTAGGTGGCAGTGTCCCCCAGGTTTTCATCTCTCCTCGT TGCTTCGAATCTCTCGTGTCCTTATTAATCCAGTAATATTTCTCTGGTCG TTGTTGCCTTGTGAAGGTTGCGGCGATCGTGTCCGGACCTCAAGGAAGTG TGGACCTAGCCACCCTCAAAGCCAATGTCTGGTAAGTGAACGCTTGTATC GGTTTTAAAAGAGTTCCCGTGCCAGGTAGATATACTCGAAATACGATGTG TTATTTTTTAACGGTTGGACTTTAACGAAGTTTTATCCGTGTGCTCCTCG ATGAATCCATCGGCCGCTGGCCCCGCTCTCGTTGAGTCATTATTCCGCCC CCGACCAAGTTCTCCGGGGCGTGATAGTCTTAAACGCGCACGCGTTTTTT TTAATGTGTCTGCTAGGTATGTAGACTCAGGGTTCGACATGCAACATCGA GTGCTGCAATGGCTGTGGGATTGGGCCGACGACCTCAACGAGGAGTCGAA GCGCAGGTTGCTACTTTTCTGGAGTGGCAGCAGCCGCGTGCCGCCGTTCG GATTTGAAGACGACGCTCTAAACGAAGACCACCGTTGGGCGATCACAAAG GGAGATCCTGAAGACGCTTGCCCCCAGGTTTCGACCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14689:2296..5387+

>mRNA_H-elongata_contig14689.3181.1 ID=mRNA_H-elongata_contig14689.3181.1|Name=mRNA_H-elongata_contig14689.3181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at H-elongata_contig14689:2296..5387+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCTGCCGTGTTTAGCACTCAACGTTCTCCTTATGACCCCTCGAA
CAATGACGCTGTGCTGAGCTCGAGTCAGCCCGGAGTGGGCAGCGCCGACG
CCCCCACCTCACAAGAGGATACAGCTTCGCGAAAGGTGGCAACAGCTCCG
GCATCTGCCTCCGCCCCCGCCCCCGGCAGATGCGCCCCAGCGAAGCTGAA
CCCTATGGCCTCGCCCTTCACCGCACCGGGATTATCATCGATGAACAGTA
ACGCTACACACAAGGCGGCATGCAACCGTGGCGGCGGCAGCAGCAGCAGC
GGTGTTCATGGGCAGTCGGCGGTGTCCATGGGTAGGGATGGTTCGGCCGC
AGTACCGCTCCCTAGCGCACAGACCTCTAGGCCACCCCCGGCGTCAGCGC
CAGCGCTTCGATCCGCAAGAGGGAAGGCCCCGTCAACGACACAAGTGCCG
GCCAACGGCTTCTGGAAGTGCTTTCCGCTGTTTAGGGTATACGCACCGGA
TCCTGCCGCGGTCGTGCCGCGTGAGGAGGGGTTGAGAAGGGCGATGGTGA
CGGGCAGTGGTAGAAGCGGGAGTCAAGAAACGGCGGCTGAGAGGGAAGAA
GCCGAGAGCCGTCTAAGGATGCTGGCTGCCGTGTTTAGCACTCAACGTTC
TCCTTATGACCCCTCGAACAATGACGCTGTGCTGAGCTCGAGTCAGCCCG
GAGTGGGCAGCGCCGACGCCCCCACCTCACAAGAGGATACAGCTTCGCGA
AAGGTGGCAACAGCTCCGGCATCTGCCTCCGCCCCCGCCCCCGGCAGATG
CGCCCCAGCGAAGCTGAACCCTATGGCCTCGCCCTTCACCGCACCGGGAT
TATCATCGATGAACAGTAACGCTACACACAAGGCGGCATGCAACCGTGGC
GGCGGCAGCAGCAGCAGCGGTGTTCATGGGCAGTCGGCGGTGTCCATGGG
TAGGGATGGTTCGGCCGCAGTACCGCTCCCTAGCGCACAGACCTCTAGGC
CACCCCCGGCGTCAGCGCCAGCGCTTCGATCCGCAAGAGGGAAGGCCCCG
TCAACGACACAAGTGCCGGCCAACGGCTTCTGGAAGTGCTTTCCGCTGTT
TAGGGTATACGCACCGGATCCTGCCGCGGTCGTGCCGCGTGAGGAGGGGT
TGAGAAGGGCGATGGTGACGGGCAGTGGTAGAAGCGGGAGTCAAGAAACG
GCGGCTGAGAGGGAAGAAGCCGAGAGCCGTCTAAGGTTCTTCCGCGCCGC
GGGCCGTCTGATAGCGCTCAGCTTGATGTACGCCACCCCGCTTGGCGTGG
TAATGCCGGAGGCGTTCTGGGCCGTGCTCTTGTTCTTCCGCGCCGCGGGC
CGTCTGATAGCGCTCAGCTTGATGTACGCCACCCCGCTTGGCGTGGTAAT
GCCGGAGGCGTTCTGGGCCGTGCTCTTGGGGATGACACCGACATGGGAGG
AATACTGCGGGCGCGACGTGCAGTACCTTCAGTCAATGGGGAAGGTGCTG
GCGCATAAGTTTGGCCCCGGCGAGGACGGTAACGGATTGGAGCTGTTCTT
CAGCATTTCTGAGAGGATATCGGAAGGAAAGGGGATGACACCGACATGGG
AGGAATACTGCGGGCGCGACGTGCAGTACCTTCAGTCAATGGGGAAGGTG
CTGGCGCATAAGTTTGGCCCCGGCGAGGACGGTAACGGATTGGAGCTGTT
CTTCAGCATTTCTGAGAGGATATCGGAAGGAAAGGTTGTGGAAATCCCGC
TGCTTGCGGGGGGCGAAACAAAGCGCGTCACAGACAAAAACAAGAAGGAC
TTCGTTAACCTGGCCACGAGGAGGCACGGCCTCGGTGGGGCTGAACAGGC
GATCGCGGCAATGCGTTCGGGGATCGGGGACGTGATACCCAAAAACCTAC
TTTCAGTGCTGCTCCCCTCCGAGGTTGTGGAAATCCCGCTGCTTGCGGGG
GGCGAAACAAAGCGCGTCACAGACAAAAACAAGAAGGACTTCGTTAACCT
GGCCACGAGGAGGCACGGCCTCGGTGGGGCTGAACAGGCGATCGCGGCAA
TGCGTTCGGGGATCGGGGACGTGATACCCAAAAACCTACTTTCAGTGCTG
CTCCCCTCCGAGGTTGCGGCGATCGTGTCCGGACCTCAAGGAAGTGTGGA
CCTAGCCACCCTCAAAGCCAATGTCTGGTTGCGGCGATCGTGTCCGGACC
TCAAGGAAGTGTGGACCTAGCCACCCTCAAAGCCAATGTCTGGTATGTAG
ACTCAGGGTTCGACATGCAACATCGAGTGCTGCAATGGCTGTGGGATTGG
GCCGACGACCTCAACGAGGAGTCGAAGCGCAGGTTGCTACTTTTCTGGAG
TGGCAGCAGCCGCGTGCCGCCGTTCGGATTTGAAGACGACGCTCTAAACG
AAGACCACCGTTGGGCGATCACAAAGGGAGATCCTGAAGACGCTTGCCCC
CAGGTTTCGACCTGGTGAGTATGTAGACTCAGGGTTCGACATGCAACATC
GAGTGCTGCAATGGCTGTGGGATTGGGCCGACGACCTCAACGAGGAGTCG
AAGCGCAGGTTGCTACTTTTCTGGAGTGGCAGCAGCCGCGTGCCGCCGTT
CGGATTTGAAGACGACGCTCTAAACGAAGACCACCGTTGGGCGATCACAA
AGGGAGATCCTGAAGACGCTTGCCCCCAGGTTTCGACCTGGTGA
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