mRNA_H-elongata_contig14688.3179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14688.3179.1
Unique NamemRNA_H-elongata_contig14688.3179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 621 bits (1602), Expect = 1.860e-211
Identity = 325/421 (77.20%), Postives = 359/421 (85.27%), Query Frame = 1
Query:    1 MRDMVPKERLASLVASAQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQALDLLSKNIAINRSCEVRFRDD 1263
            M DMV K++L +LV SAQE EENRKRLDE F G  GL K LRVD+S GL+  QVELLRE YG N+FPEIPMK FCMLFAEAF+DTILLVLI AA VSLI+G I+ P  GWI+GVAILIAVLIVALVTA NDYSKELQFRALEK+SEE  R M LRDG   +VHP+ LVVGDVV+MKPGDGIPADG+L AGEGVKSNESGLTGEPDDLTKRAEADCFL+SSC LTEV QSADCKM+V+ VGE SQWG IRATLVSEP QTPLQ KLDNMAKL+GYIGV FAVATF AL+ MIW  HDG+     +++AFIIGVTI+V     GLPLAVTISLAYSTRKMY DQNLIRVLAACETMGNATNICSDKTGTLTENQMTAV+GWF+D+I+ G  IKRA SLSP +LDL+S+NIAINRSC VRF+D+
Sbjct:   44 MSDMVAKDKLLALVGSAQEQEENRKRLDETFNGTTGLAKSLRVDLSQGLATEQVELLREAYGANAFPEIPMKSFCMLFAEAFNDTILLVLIAAAVVSLIIGIIDHPDVGWIDGVAILIAVLIVALVTAGNDYSKELQFRALEKTSEEGIRVMVLRDGASQLVHPEALVVGDVVIMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVGQSADCKMMVHSVGEQSQWGLIRATLVSEPQQTPLQEKLDNMAKLIGYIGVAFAVATFTALVVMIWAKHDGDEVLERVVEAFIIGVTIVV-----GLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIVRGADIKRAQSLSPSSLDLVSQNIAINRSCTVRFKDE 459          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 524 bits (1350), Expect = 4.280e-173
Identity = 277/418 (66.27%), Postives = 329/418 (78.71%), Query Frame = 1
Query:   13 VPKERLASLVASAQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAE-ADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQALDLLSKNIAINRSCEVRFRDD 1263
            V  +RL SLV+SAQE++EN++RLD+ FGG   L  GL VD+  GLS  QV   RE +G N FPE PMKGF  LF E+F+DTIL VLI AA VSLI+G I +P  GWIEG AILIAV IVA+VTA+NDYSKELQFRALEK+SEE +RA+ LR+GE   +HP +LV+GDVV++K GD IPADGI+  GEGVK NESGLTGEPDDL KR + ++ FLFSSC +TEV  S+D K+VV  VG +S+WGKIRATL SEP +TPLQ KLD MA L+GY+GV FAVATF+ L+ MIW  H G +     +DAFII VTIIVVAIPEGLPLAVTISLAYSTRKMY DQNLIRVLAACETMGNATNICSDKTGTLT NQMT V+GWF D  +  D+++ A ++ P+ LDL++ N AINRSCEV F+ +
Sbjct:   97 VTPDRLFSLVSSAQEVKENKERLDKQFGGTLQLAAGLGVDLITGLSPDQVIRQRERFGNNCFPEPPMKGFFKLFMESFNDTILQVLIVAAVVSLIIGIITEPGHGWIEGTAILIAVFIVAIVTATNDYSKELQFRALEKTSEESERALVLRNGETLQIHPDELVIGDVVLLKAGDSIPADGIIFEGEGVKCNESGLTGEPDDLEKRPDGSNPFLFSSCLVTEVGNSSDAKIVVTGVGTHSEWGKIRATLTSEPSETPLQQKLDVMATLIGYVGVGFAVATFIVLVIMIWARHGGQDILQGFVDAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTMNQMTVVEGWFGDNHVGPDALRVAGTIPPEVLDLVTHNCAINRSCEVHFKGE 514          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 501 bits (1291), Expect = 4.000e-165
Identity = 266/412 (64.56%), Postives = 315/412 (76.46%), Query Frame = 1
Query:   31 ASLVASAQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEA-DCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQALDLLSKNIAINRSCEVRFRDD 1263
            A+L   A E +EN++RL++ FGG   L  GL VD+  GL+  QV   RE +G N FPE PMKGF  LF EAF+DTIL+VLI AA VSLI+G +E+P  GWIEG AILIAVLIVA VTA NDYSKELQFRALEKSSEE +RA+ LR GE    HP +LVVGDVV++K GD IPADGI+  GEGV+SNESGLTGEPDDL KR +  + F+FSSC +TEV  S+D K++V  VGE S+WGKIRATL SEP +TPLQ+KLD MA ++GY+GV FAV TF+ L+ MIW  H G +    I++AFII VTIIVVAIPEGLPLAVTISLAYSTRKMY DQNLIRVLAACETMGNATNICSDKTGTLT NQMT V+GWF D+               Q LDL+++N +INRSC++ F+D+
Sbjct:   83 ATLSPRAHEAKENKERLEKQFGGTLKLAAGLGVDLITGLTPDQVISQREKFGNNCFPEPPMKGFLKLFLEAFNDTILMVLIAAAVVSLIIGIVEEPGHGWIEGTAILIAVLIVAFVTAGNDYSKELQFRALEKSSEESERALVLRHGETLQCHPDELVVGDVVMLKAGDSIPADGIIFEGEGVRSNESGLTGEPDDLDKRPDGKNPFVFSSCLITEVGNSSDAKILVTAVGERSEWGKIRATLTSEPTETPLQVKLDAMATMIGYVGVGFAVCTFVVLVIMIWARHGGQDVLQRIVEAFIICVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTMNQMTVVEGWFGDK---------------QVLDLVTQNCSINRSCKLHFKDE 479          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 419 bits (1077), Expect = 4.290e-133
Identity = 227/410 (55.37%), Postives = 288/410 (70.24%), Query Frame = 1
Query:   49 AQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWL-------HHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQALDLLSKNIAINRSCEVRFR 1257
            AQE E N+  LD   GG+ GL K L VD+  GL   QV  LR  +G NSFPE P+  +  LF  A  D I++VLI A  +SL+VG IEDP +GWIEG AI++A++IVA VTASN+Y+KELQFR+LE +S++++R    R G +H V+P+++VVGD++ +K GDGIPADGIL+ G+GVK NES LTGEP+DL K+ + D FL SS  LT+   S +  + V  VG  SQWGKIRA LV +   TPLQ KL++ A ++G +G F +VATFLAL+ MI+        H DG      +++AFII VTIIVVAIPEGLPLAVTISLAYSTRKMY DQNLIRVLAACETMGNATNICSDKTGTLTEN+MT V+ W   ++   D       L P+   ++S N+A+N S  V F+
Sbjct:   52 AQEAESNKTALDA-LGGLSGLAKELEVDLKHGLKDRQVSELRARFGANSFPEAPIASWLELFVNALKDPIIVVLIFACIISLVVGLIEDPHDGWIEGTAIMVAIMIVATVTASNNYNKELQFRSLEATSKKDERVFIKRSGALHFVNPEEIVVGDLIKLKAGDGIPADGILVDGDGVKVNESSLTGEPEDLLKKVDKDPFLLSSSLLTDQGSSPEIFIFVIAVGPRSQWGKIRANLVQDSTPTPLQEKLEHAATVIGKVGTFVSVATFLALVVMIFKPPGQPARHPDGQKITSELINAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENRMTVVELWAGGQVYM-DMKAAGSELKPKLKSMISINVAVNSSANVLFK 459          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 412 bits (1058), Expect = 3.010e-130
Identity = 213/369 (57.72%), Postives = 273/369 (73.98%), Query Frame = 1
Query:   61 EENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDS 1167
            E+N+K L+E  GGV+G+   + +++  GL+  QVE +R  +GPN FPE PM  F   F E+F+D  L++LI AA VSLI+G IEDP +GWIEG AIL+AV +VA+VTA+NDY KELQFR LEK+SE  +R   +R+G    ++P  LVVGDVV +K GDGIPADG++  G GVK NES LTGEPDDL K  + D F  SS  +T+   S D K++   +G+NSQWGKI+A LV E   TPLQ +L+ M  L+GY G   A+ TF+ALLAMIWL HDG++  H++++AFII VTIIVVAIPEGLPLAV ISL+YS+R+M  D NLIR L ACETMGNATNIC+DKTGTLTEN+MT V+G+FA + +  D+
Sbjct:   72 EDNKKHLEE-LGGVEGIASRIDLNLKMGLTDAQVEAMRSKFGPNEFPEKPMTTFLQYFIESFNDLTLMILIAAAIVSLIIGSIEDPDKGWIEGCAILLAVFLVAIVTATNDYQKELQFRNLEKNSEGMERCSVIRNGSTVRINPSQLVVGDVVSLKSGDGIPADGVMFEGGGVKCNESALTGEPDDLKKDLKNDPFFLSSTVVTDTGTSGDAKVICVGIGKNSQWGKIKANLVVEEVNTPLQERLEEMVTLIGYGGAGSALLTFIALLAMIWLRHDGDDVLHYVIEAFIIAVTIIVVAIPEGLPLAVAISLSYSSRQMLMDGNLIRKLEACETMGNATNICTDKTGTLTENRMTVVEGFFAGKHIDQDA 439          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK)

HSP 1 Score: 389 bits (1000), Expect = 3.670e-122
Identity = 228/406 (56.16%), Postives = 278/406 (68.47%), Query Frame = 1
Query:   61 EENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFI--EDPAE-GWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWH---HILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFA----DEILSGDSIKRADSLSPQALDLLSKNIAINRSCEV 1248
            EEN +RL +  GG+Q +   L VD+S GL+  Q+E + + +G N  P  PMKG   LF EAF+DT LLVL+ AA VSL VG    ED  E GWIEG AIL+A  IV+ VTA NDY+KE QFRALE++S  ++ A+ LR G+   V   DLVVGDVV++K G G+PADG+L  GEG+K++ES LTGEP+   K    D FL SS TL+++    +  M V  VG  SQWGKIR  LVSEP  TPLQ KLD MAK++GYIG FFA  T  AL+AMIW+ HD          ++ AFI+ VTI+VVAIPEGLPLAVTI+LAYS+RKMY DQNLIR LAACETMGNAT ICSDKTGTLTENQMT V GWFA    DE+    ++  A  L  +  DL++ N+A N S  V
Sbjct:   36 EENLQRL-KGLGGLQQIAANLGVDLSHGLTEEQLEKMEQRFGKNFLPSPPMKGLLRLFIEAFNDTTLLVLMVAAIVSLFVGVFGEEDGREKGWIEGTAILMACFIVSWVTAINDYTKEKQFRALEENSRGDEEALVLRGGQPVAVKVDDLVVGDVVILKAGGGVPADGLLALGEGIKADESSLTGEPEPRLK-GPGDPFLISSSTLSDLGHFPEVHMFVIGVGGQSQWGKIREKLVSEPTNTPLQDKLDYMAKVIGYIGCFFATLTLAALMAMIWVEHDSPTTSQISSGVIHAFIMAVTIVVVAIPEGLPLAVTIALAYSSRKMYEDQNLIRTLAACETMGNATTICSDKTGTLTENQMTVVAGWFAGAEADELEGVRALGAA--LPAEVRDLIADNVATNNSTSV 437          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA)

HSP 1 Score: 389 bits (998), Expect = 9.550e-122
Identity = 209/400 (52.25%), Postives = 273/400 (68.25%), Query Frame = 1
Query:   61 EENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQALDLLSKNIAINRSCEVRFRD 1260
            E+N+  LD   GGV+ L K + V+ + GL+  QV   RE +G N FPE PM  +  L   A  DT LL+L  AA VSL++G + +P  GWIEG AI IAV +V+ ++A NDYSK+LQF+ALE SS +++R   LR+G I  V+P DLVVGD++V++ GD IPAD IL   + V +NES LTGEPDDL K    DCFL SSC +TE     +C+ +V  +G +SQWGKI+A LVSE   TPLQ KL+ M K VGYIG+  A  TF+AL+  IW    G +P +  ++AFI+ +TI+VVAIPEGLPLAVTISLAYST+KMY DQ  IRVLAACETMGNATNICSDKTGTLT+N+MT V+G+F D +   +     + +      ++ +  +INRS  +  +D
Sbjct:   42 EDNKANLDA-LGGVEKLIKMIGVNPATGLTSAQVAAQREQFGDNCFPESPMDSYLALLIAALSDTTLLILTAAAAVSLVIGIVTEPENGWIEGTAIFIAVFLVSNISAGNDYSKQLQFKALEHSSAKDERTSVLREGVIERVNPIDLVVGDILVLQAGDAIPADSILFTKDFVLANESSLTGEPDDLKKNHAKDCFLLSSCLVTE---GEECRALVIGIGMHSQWGKIKANLVSEAVNTPLQDKLEEMTKQVGYIGMMSAFGTFVALIISIWARDGGKDPLNGFINAFIVCITIVVVAIPEGLPLAVTISLAYSTKKMYQDQCFIRVLAACETMGNATNICSDKTGTLTQNRMTVVEGYFGDVVYEQEEFA-GNPIPDSVKHVIVEQCSINRSAYLVHKD 436          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S2STW0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STW0_9STRA)

HSP 1 Score: 368 bits (945), Expect = 4.130e-118
Identity = 210/409 (51.34%), Postives = 283/409 (69.19%), Query Frame = 1
Query:   52 QELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIE-DPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIA---GEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPW-HHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSI-KRADS--LSPQALDLLSKNIAINRSCEVRF 1254
            Q  +EN+ +LD+ +GGVQ L + L+VD+S GL   +V   R+ YG N  PE PMKGF +LF EAF+D++L VL+ AA VS+ +GF+  +   GWIEGVAI +AV IVA+VTA+NDY+KELQFR+LEK+S+E  R    R G+   ++P +LVVGDV+ ++ GD I AD I+ A    EGV ++E+ LTGE + + K +  D FL SS       ++ D + +V  VGE+SQWGKI+ATL  E   TPLQ KL++M  ++GY G   A  TFL  +  I +    +  W + I+DAFII +TIIVVAIPEGLPLAVTISLAYST+KMY ++NLIRVLAACETMGNATNICSDKTGTLTE +M+ V+GWF+D     D + K  D   ++   L +L +NI++N + +V +
Sbjct:   68 QSSKENKAQLDQ-YGGVQVLAQQLQVDLSSGLGPKEVTASRDMYGTNEMPESPMKGFLVLFLEAFNDSVLWVLMAAAAVSIALGFVNTEEQHGWIEGVAIFMAVFIVAIVTATNDYTKELQFRSLEKTSQETQRCSIFRSGKRIQINPNELVVGDVLSIQGGDRIYADAIIFACDLHEGVMTDEAALTGESEAVRKTSSGDPFLLSSTVCNSHGKAEDARALVIAVGEHSQWGKIKATLQQEERPTPLQEKLEDMVSIIGYFGTGAAFLTFLVAVIYIAIDDPSSTEWGNRIVDAFIIAITIIVVAIPEGLPLAVTISLAYSTKKMYKEKNLIRVLAACETMGNATNICSDKTGTLTEGRMSVVEGWFSDIFTIEDDLPKYIDKWIIAGWLLPML-QNISVNSAGDVTY 474          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S1UCA7_9STRA (P-type Ca(2+) transporter (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCA7_9STRA)

HSP 1 Score: 362 bits (929), Expect = 1.480e-114
Identity = 205/410 (50.00%), Postives = 267/410 (65.12%), Query Frame = 1
Query:   49 AQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEA-DCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEIL----SGDSIKRADSLSPQALDLLSKNIAINRSCEVRFRDD 1263
            AQ  E N   L    GG + L + + VD+  GL   QV++LR  YG N FP  PMK FC LF EAF+D +L +LI AA  +   G      E   E VAI +A+LIVALVTA NDYSKELQFR LE+S+  ++     RDGE   ++P D+VVGD+V++  GDG+PADGI+++GEG K++ES LTGEP+D  K  +  D F+ SS ++  +  +++C+M+   VG NSQWGKIRA L +EP  TPLQ KL+ MA  +GY+G   A+ T   +L M + H  G +  H IL+A +I VTI+VVAIPEGLPLAVTISLAYST KM  D NLIR LAACETMGNAT+ICSDKTGTLT+N+MT V  W A   +    + +S+       P   DLL K + +N + ++R   D
Sbjct:   24 AQSTEGNAAAL-RSMGGTEALARRIGVDLQKGLRTDQVDILRAQYGNNHFPSPPMKSFCQLFIEAFNDVVLWILIAAAVANG--GIAVYEGEFPYETVAIGMAILIVALVTAGNDYSKELQFRKLEESARSDETCTVFRDGERCQINPDDIVVGDIVMLGAGDGVPADGIIVSGEGTKTDESALTGEPEDCPKDVDGKDPFMLSSSSVKIIESASECRMMAISVGSNSQWGKIRAGLETEPEDTPLQEKLETMAVQIGYLGFAAAILTGAVMLGMGFSH--GGSADHVILEAIVISVTIVVVAIPEGLPLAVTISLAYSTTKMMKDNNLIRQLAACETMGNATSICSDKTGTLTQNRMTVVHAWAAGGTMGDGEAAESVAGVLQRMPSLTDLLVKGMCLNSTAQIRHNGD 428          
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Match: A0A7S1YV36_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YV36_TRICV)

HSP 1 Score: 344 bits (883), Expect = 4.790e-111
Identity = 206/415 (49.64%), Postives = 271/415 (65.30%), Query Frame = 1
Query:    4 RDMVPKERLASLVASAQELEENRKRLDE-DFGGVQGLTKGLRVDMSFGLSMGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIVGFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDRAMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGLTGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRATLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWL----HHDGNNPWHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIK--RADSLSPQALDLLSKNIA 1227
            +D    + L   + + Q L  N K L     GG  GL K L  D   G+     EL RE YG NS P  P   F  LF + F D  + +L+ AA VSL VG  EDP  G+IEGVAIL AVLIV++VTA+NDY KE QFRAL + +++    + +R G    +   D+V+GDVV ++ GD IP DG+L+A +G++ +ES LTGEP+D+ K   +D F+ S CT T  S     + V   VG+ SQWG I+A L  E  QTPLQ KLD+MA L+GY+G+  A ATF+A++ +  L    + D  + + H LDAFIIGVTI+VVA+PEGLPLAVTISLA+ST+KM  DQNLIR LAACETMGNATNICSDKTGTLTEN+MT V+G FAD +  GD+ +  +  ++S  A++++ + IA
Sbjct:   68 KDPTAVKELLHSINAPQSLSSNLKNLTSPSVGGQDGLVKLLDTDADAGIDPTTAELRRERYGCNSLPSSPRATFWQLFVDTFDDATVQILMVAALVSLGVGLYEDPTTGYIEGVAILAAVLIVSVVTAANDYGKEKQFRALSEVNDDVP-VVVVRGGRARQIPVADIVLGDVVCVEAGDQIPCDGVLLACDGLEVDESALTGEPEDVDKDLASDPFVLSGCTATHGSA----RFVAVAVGKESQWGVIKAHLEKEQDQTPLQEKLDDMAALIGYVGMAAAAATFVAMMIIKLLVKPAYLDDVSVFSHALDAFIIGVTIVVVAVPEGLPLAVTISLAFSTKKMLADQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFAD-MEDGDTAEPTKKANVSDAAMEIILEGIA 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14688.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE1.860e-21177.20Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZDK6_9STRA4.280e-17366.27Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZLB8_9STRA4.000e-16564.56Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
W7TSK5_9STRA4.290e-13355.37Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]
A0A7S2VWE4_9STRA3.010e-13057.72Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]
A0A7S3Y3V0_HETAK3.670e-12256.16Calcium-transporting ATPase n=5 Tax=Heterosigma ak... [more]
A0A7S3HT93_9STRA9.550e-12252.25Calcium-transporting ATPase n=2 Tax=Spumella elong... [more]
A0A7S2STW0_9STRA4.130e-11851.34Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S1UCA7_9STRA1.480e-11450.00P-type Ca(2+) transporter (Fragment) n=1 Tax=Phaeo... [more]
A0A7S1YV36_TRICV4.790e-11149.64Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14688contigH-elongata_contig14688:2366..7030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score630.2
Seed ortholog evalue7.1e-178
Seed eggNOG ortholog2880.D7G3Y5
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons8
Model size1263
Cds size1263
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14688.3179.1prot_H-elongata_contig14688.3179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14688 2366..7030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.0369732-CDS-H-elongata_contig14688:2365..24191622929872.0369732-CDS-H-elongata_contig14688:2365..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 2366..2419 +
1691679190.0431945-CDS-H-elongata_contig14688:2365..24191691679190.0431945-CDS-H-elongata_contig14688:2365..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 2366..2419 +
1622929872.053425-CDS-H-elongata_contig14688:2874..31441622929872.053425-CDS-H-elongata_contig14688:2874..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 2875..3144 +
1691679190.056857-CDS-H-elongata_contig14688:2874..31441691679190.056857-CDS-H-elongata_contig14688:2874..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 2875..3144 +
1622929872.0706398-CDS-H-elongata_contig14688:3582..37411622929872.0706398-CDS-H-elongata_contig14688:3582..3741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 3583..3741 +
1691679190.0641534-CDS-H-elongata_contig14688:3582..37411691679190.0641534-CDS-H-elongata_contig14688:3582..3741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 3583..3741 +
1622929872.1186643-CDS-H-elongata_contig14688:4232..44081622929872.1186643-CDS-H-elongata_contig14688:4232..4408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 4233..4408 +
1691679190.0718505-CDS-H-elongata_contig14688:4232..44081691679190.0718505-CDS-H-elongata_contig14688:4232..4408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 4233..4408 +
1622929872.1325998-CDS-H-elongata_contig14688:5197..53561622929872.1325998-CDS-H-elongata_contig14688:5197..5356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 5198..5356 +
1691679190.0792737-CDS-H-elongata_contig14688:5197..53561691679190.0792737-CDS-H-elongata_contig14688:5197..5356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 5198..5356 +
1622929872.143281-CDS-H-elongata_contig14688:5722..58671622929872.143281-CDS-H-elongata_contig14688:5722..5867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 5723..5867 +
1691679190.0865471-CDS-H-elongata_contig14688:5722..58671691679190.0865471-CDS-H-elongata_contig14688:5722..5867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 5723..5867 +
1622929872.1533413-CDS-H-elongata_contig14688:6566..66951622929872.1533413-CDS-H-elongata_contig14688:6566..6695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 6567..6695 +
1691679190.0940177-CDS-H-elongata_contig14688:6566..66951691679190.0940177-CDS-H-elongata_contig14688:6566..6695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 6567..6695 +
1622929872.163213-CDS-H-elongata_contig14688:6859..70301622929872.163213-CDS-H-elongata_contig14688:6859..7030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 6860..7030 +
1691679190.1011791-CDS-H-elongata_contig14688:6859..70301691679190.1011791-CDS-H-elongata_contig14688:6859..7030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14688 6860..7030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14688.3179.1

>prot_H-elongata_contig14688.3179.1 ID=prot_H-elongata_contig14688.3179.1|Name=mRNA_H-elongata_contig14688.3179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=421bp
MRDMVPKERLASLVASAQELEENRKRLDEDFGGVQGLTKGLRVDMSFGLS
MGQVELLRETYGPNSFPEIPMKGFCMLFAEAFHDTILLVLIGAATVSLIV
GFIEDPAEGWIEGVAILIAVLIVALVTASNDYSKELQFRALEKSSEEEDR
AMALRDGEIHMVHPKDLVVGDVVVMKPGDGIPADGILIAGEGVKSNESGL
TGEPDDLTKRAEADCFLFSSCTLTEVSQSADCKMVVYCVGENSQWGKIRA
TLVSEPGQTPLQLKLDNMAKLVGYIGVFFAVATFLALLAMIWLHHDGNNP
WHHILDAFIIGVTIIVVAIPEGLPLAVTISLAYSTRKMYNDQNLIRVLAA
CETMGNATNICSDKTGTLTENQMTAVKGWFADEILSGDSIKRADSLSPQA
LDLLSKNIAINRSCEVRFRDD
back to top

mRNA from alignment at H-elongata_contig14688:2366..7030+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14688.3179.1 ID=mRNA_H-elongata_contig14688.3179.1|Name=mRNA_H-elongata_contig14688.3179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4665bp|location=Sequence derived from alignment at H-elongata_contig14688:2366..7030+ (Himanthalia elongata Himel1 dioecious)
ATGCGGGACATGGTTCCCAAGGAAAGACTGGCGTCGCTAGTGGCCTCCGC ACAGGTGGGCGTTCAAAGATATGTCTACAATATCATAGTGTTTTAGTATA CTCTAAACTCTATACTGTATAGTTTTGTGCTCTTGGCTCCCTGTTTCTAT CGCGCACGCGATATTATTGTTTATCGGGGAAGGGGGGTGAGGACTTAAGA GAAAAAGATCGCGCTCGAGATCGTTCTATTGGACAGCAGCTGGTTTCAAT GAAGATCTTCCGGCGCGCAAATAGTCTAGGCTAAAAACCTGTGGAACTCT TCTCCGAATAAAACACGAGTAGAAAGTTTATATTTTTCGCTTATCTCAGT GTTTTTTCTAGTCTTCGTAATTTTAGCACCTCTGGTCCCATTTTTCCAGA TGGAACCATCTTTGATTACGTCGCGCAGTAACTGGGCTGTAACGTTGGAA GGGGTTTCAAAATTAAGCATTTGCTTGTTTTGCCCGGGTTGTTATTTTGT CCACCGCAGGAGCTGGAGGAAAATCGAAAACGATTGGACGAGGACTTCGG TGGAGTCCAGGGTTTGACCAAAGGCCTCCGCGTTGATATGAGCTTCGGGC TTTCCATGGGCCAGGTGGAGTTGCTCCGTGAGACGTACGGCCCGAACTCC TTCCCAGAGATCCCGATGAAGGGTTTCTGCATGCTGTTTGCGGAGGCGTT TCATGACACCATCCTGCTCGTTCTTATCGGCGCGGCTACTGTCTCGCTTA TCGTAGGTTTCATCGAGGACCCTGCTGAGGTGCGTGTGTTCAGCGTGTGA GGGAATATTGCTGGGGGAGAGCAGATGTGTTGGATGTCACTGTTCGCGTC TTGCTTATGGTTGGGTGTTGATTATGATTGTTCGAAAATCTGTTTTGATC GAGCAAATCAATGTCGAGTGTGGAGTTAAACGAGTCTAAAGTGCGCTTCA TGCAGAATACTGTAGGCTAAGGCAACCCTACTCACAGAGTCGAGGGAGCG CGTAGTCAAAAGTGTTTGCTACTTGCTATATATAGTGTCATTTGTCCAAG TCTTCATCGAGGAGCCTTGGTGGCGCGTGATGAGGCGCTCAGACGCGTTC TTGAATAATGCGCAGACTATTTGGTTCTGTGCTTCCGCTTGCTTCTTACC ATAAGCCTAGCAATCCTATCGTGTGTTTCTCTCATCCTCTCCCCGTTAAA ACCTCTGCTCGGCGCAGGGATGGATCGAAGGTGTAGCGATCCTCATAGCT GTGCTCATCGTGGCCCTCGTGACGGCAAGCAATGATTACAGCAAGGAGCT GCAGTTCCGCGCGCTCGAAAAATCCTCCGAGGAGGAAGACCGTGCTATGG CCCTTAGGGACGGCGAAATCCACATGGTAAAAACCTGCACCATACTATAA TATAAGCCAATATAAGCCTTTGAGGCTTACTACCAGCTTGCGGTGGTTAA AATACGGGGGATGTCGTCCTTGTCGCGGGCTTCTCGCTATTTTTTTTTTT AATTCTACCCTTAATTCTTGCCCCTTTATCTCTGCCACGTTTTGTCCTTC TTTCCACGTTGAGAGGGGAGTGGAGGATGCTAACGCCCTTTGTGATTCGA GAGGCGCGTGGATTTCACGGCTTTAAGAGTGTCTCGAGAAAACTAGCGTA ACTAGTCTTTGTTCGACTTTCGCAGACGCTTTTGGGTTCCCTCGATTAAG GATGGGTTTCCACCGTGTGGTGCTGGCGTTATATCGTACTAAATCGTATT TTTTACAGTATAAATAATTTAATATATTTTTTATAGTAGCGCCTGGCCCA TCCGAGTTACGGAAGAAATAATTTATGTATGTATTTGATATATATATATA TATAACCGTCGCCGCAGGTGCATCCAAAAGATCTGGTTGTGGGTGACGTT GTTGTCATGAAGCCTGGTGATGGCATTCCTGCGGATGGTATTCTGATTGC GGGAGAGGGCGTCAAGTCGAACGAATCGGGCCTCACGGGAGAGCCGGACG ACCTCACCAAGAGGGCCGAGGCGGACTGTTTCCTCTTTAGCAGGTTATTC TTGAAGTGACGTATGACGTATGTATTTACACGTTTATCTGCCGCCGCTTT GACTGTCGCACAAGGGAAAGTTGGTATTATAAGTAGCGTGAACAGTCGAC TTTGCCGGGTGATATATAAAAATGTATGTATATATATATATTTCTACTTT GTAACCACGGGCTGGATTTTGACATTAGCTTATGTGAAAATTCAATAAAA AAAGCATAGTTAGGTAGTTGCTGAGAAAATAGTTTTGTAATGGGGATTGA ATTGTGTGAAAGTTTTCTATCGGCGGTTACTGAGAGAGGGATGCTTCTAG CATCGATGTGTGTGTGTAGTGATCGGCGTAGTGATCGTCCAGGCCATGCC ATGGTCCCCTGGTATATTTTTCTCTCCCTTGAGGGCTTAGTTCATTGTAT TGCATTGACGGTCGGTAAAAAAAGTTAAATTTGTAGTAATCACCCGCACT TGTAATGGAGTGGTAGGCCATAAAGTTAGCTCTATCGCCTTTTGACGATG CGGGCCTTTCGATATTTCGATGCACGCGCGCGTATTTGGTACGTTGAATG TAGCCTTATGGAATTATGCGTGCCCACGGTGGAATAAGGCTCTTTTCACA GGTACGGCCGCCCTCCGCATCGACTTCCGAGCCCGCCACACGCGCGAGTG TAAAAATGGGAACGATAAATACATCGTCGCGCGTGTTCTCGGGCCATGCT ATTTTATGTCCCGATTTATGCCACGTAACGCTACGCGCCATCAACGGGAT CCACCTGATGCGTCTCTACCGCGAAAAAACAGCTGTACCCTCACGGAGGT TAGCCAAAGTGCCGACTGCAAGATGGTGGTATACTGCGTCGGGGAGAACT CTCAGTGGGGGAAAATCCGCGCCACGCTGGTGTCGGAACCTGGACAAACC CCGCTGCAGCTCAAGCTGGACAACATGGCTAAGCTCGTCGGGTGAGGAGC GGAATTCCACTGTAATACATGAAAAAACTTTGCCCCAGCGTCATGTGGTT TCTGCGACGAGGGTAGGTCGTAGAGAGGCGTGGAGAAGTTAGAGCCGTCA AAGCCCAGGTCACCGAACTCTCTTGACCTGAGCTTTGTCGGTTATGACGT CACTCGTTGCCCTTCGCATTCGGCCCCCTCTTGGATCAAAACATCATACA ACATACGCGATCGGCGTTGCATTGATCAACATCAAACAGGGCACAAATTT TGTTGTTCGCTCTATCTAACGTCCCCCTAGGTGTCGCAGGCTCTCTCTCA CGCACGCGTCTCCGTCGTTTGCTGAAATGTTTTTCTCTTCATACTGTTTT GTATTAGATACATAGGCGTCTTTTTCGCGGTGGCGACTTTTTTGGCGCTG TTGGCAATGATCTGGTTGCATCACGACGGGAATAACCCCTGGCACCATAT TCTGGACGCGTTTATCATCGGTGTAACGATTATCGTGGTTGCCATCCCCG AGGTATGTAAGCGCTAGAGTTCTAGATAGAAATCCCGAGTTATATATATA TATATTTAATAATGTTAAACTTTCTATCTTTCATTTTTTATTTAGCTAAT TTTGTGTTTTTCGTGTTGTACATATTTAAAAATTAAGTGAAAATTATTTA GAGCCGATTAAAAAGTAGTAGAGAAAAACACCAATAAAACGTGTCAGGTG GTGTTTGTTGTACTTAATTTTAGACTTCTTTAATTGTTTGTTTTTCTAGA ATACCAGGTATATGATTGCACTCTGTGTCCTCAGCGTATTTCGTGGGGGA GGGGAAGAAAGGCAGGTGTCCCCCCCTTGTTTCCCTGCCAGACAGCTGAC CGCTTGGTTTTATGTACACGCCCTTTTTATTAGAAAACCGCACCTCCACA AGAATAACGCAAAGTAAAGAGGGGATTTTGTGATCGTAACGTAGTGATGT ACACATTTAACCCTGTATGGTGCTAAGAAGGCATGGATGTATGTTTGGAG GGTGCTAAGAATGAGTTCATACCGTATGTTTTAAATGAGAAAATCGAAAG ATTTAATATTAAGATTTACACGATTTAAGATTCTACCTTGTTACCACGGG CTGGATTTTGACACCACTTCATCGGTGATATTTTTTACTTTTTTGGTATT GAATGCGGCATGTTTTTTTTTCGTCGGCTCTATCAACCCTTTTGTCTTCA GGGTCTTCCTCTTGCCGTGACCATCTCCCTGGCTTATTCCACGAGGAAGA TGTACAACGACCAGAACCTCATCCGAGTCCTGGCGGCGTGCGAGACGATG GGGAACGCCACCAACATCTGCTCTGACAAGGTCGCGCGGAGTTGTTGTCT TTGATCGCTAGCTCATGGTTGGATTTGCTTTTTTCCACCCTATACCGACG AGGATGATGAGATACCAATCCCCGATCCCTGCCGGCTCCTTATTGCTTCC CCTGCCTCGCCACCGGCTTCGAAAATGGGCTCAATTAAATACAGACGGGA ACGCTAACAGAGAACCAGATGACGGCAGTGAAAGGGTGGTTCGCGGACGA GATCTTATCGGGAGACTCGATCAAGCGCGCCGATTCGCTGTCGCCCCAGG CGCTGGACTTGCTGTCGAAGAACATCGCCATCAACCGGTCTTGCGAAGTT CGCTTCAGGGACGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14688:2366..7030+

>mRNA_H-elongata_contig14688.3179.1 ID=mRNA_H-elongata_contig14688.3179.1|Name=mRNA_H-elongata_contig14688.3179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2526bp|location=Sequence derived from alignment at H-elongata_contig14688:2366..7030+ (Himanthalia elongata Himel1 dioecious)
ATGCGGGACATGGTTCCCAAGGAAAGACTGGCGTCGCTAGTGGCCTCCGC
ACAGATGCGGGACATGGTTCCCAAGGAAAGACTGGCGTCGCTAGTGGCCT
CCGCACAGGAGCTGGAGGAAAATCGAAAACGATTGGACGAGGACTTCGGT
GGAGTCCAGGGTTTGACCAAAGGCCTCCGCGTTGATATGAGCTTCGGGCT
TTCCATGGGCCAGGTGGAGTTGCTCCGTGAGACGTACGGCCCGAACTCCT
TCCCAGAGATCCCGATGAAGGGTTTCTGCATGCTGTTTGCGGAGGCGTTT
CATGACACCATCCTGCTCGTTCTTATCGGCGCGGCTACTGTCTCGCTTAT
CGTAGGTTTCATCGAGGACCCTGCTGAGGAGCTGGAGGAAAATCGAAAAC
GATTGGACGAGGACTTCGGTGGAGTCCAGGGTTTGACCAAAGGCCTCCGC
GTTGATATGAGCTTCGGGCTTTCCATGGGCCAGGTGGAGTTGCTCCGTGA
GACGTACGGCCCGAACTCCTTCCCAGAGATCCCGATGAAGGGTTTCTGCA
TGCTGTTTGCGGAGGCGTTTCATGACACCATCCTGCTCGTTCTTATCGGC
GCGGCTACTGTCTCGCTTATCGTAGGTTTCATCGAGGACCCTGCTGAGGG
ATGGATCGAAGGTGTAGCGATCCTCATAGCTGTGCTCATCGTGGCCCTCG
TGACGGCAAGCAATGATTACAGCAAGGAGCTGCAGTTCCGCGCGCTCGAA
AAATCCTCCGAGGAGGAAGACCGTGCTATGGCCCTTAGGGACGGCGAAAT
CCACATGGGATGGATCGAAGGTGTAGCGATCCTCATAGCTGTGCTCATCG
TGGCCCTCGTGACGGCAAGCAATGATTACAGCAAGGAGCTGCAGTTCCGC
GCGCTCGAAAAATCCTCCGAGGAGGAAGACCGTGCTATGGCCCTTAGGGA
CGGCGAAATCCACATGGTGCATCCAAAAGATCTGGTTGTGGGTGACGTTG
TTGTCATGAAGCCTGGTGATGGCATTCCTGCGGATGGTATTCTGATTGCG
GGAGAGGGCGTCAAGTCGAACGAATCGGGCCTCACGGGAGAGCCGGACGA
CCTCACCAAGAGGGCCGAGGCGGACTGTTTCCTCTTTAGCAGGTGCATCC
AAAAGATCTGGTTGTGGGTGACGTTGTTGTCATGAAGCCTGGTGATGGCA
TTCCTGCGGATGGTATTCTGATTGCGGGAGAGGGCGTCAAGTCGAACGAA
TCGGGCCTCACGGGAGAGCCGGACGACCTCACCAAGAGGGCCGAGGCGGA
CTGTTTCCTCTTTAGCAGCTGTACCCTCACGGAGGTTAGCCAAAGTGCCG
ACTGCAAGATGGTGGTATACTGCGTCGGGGAGAACTCTCAGTGGGGGAAA
ATCCGCGCCACGCTGGTGTCGGAACCTGGACAAACCCCGCTGCAGCTCAA
GCTGGACAACATGGCTAAGCTCGTCGGCTGTACCCTCACGGAGGTTAGCC
AAAGTGCCGACTGCAAGATGGTGGTATACTGCGTCGGGGAGAACTCTCAG
TGGGGGAAAATCCGCGCCACGCTGGTGTCGGAACCTGGACAAACCCCGCT
GCAGCTCAAGCTGGACAACATGGCTAAGCTCGTCGGATACATAGGCGTCT
TTTTCGCGGTGGCGACTTTTTTGGCGCTGTTGGCAATGATCTGGTTGCAT
CACGACGGGAATAACCCCTGGCACCATATTCTGGACGCGTTTATCATCGG
TGTAACGATTATCGTGGTTGCCATCCCCGAGATACATAGGCGTCTTTTTC
GCGGTGGCGACTTTTTTGGCGCTGTTGGCAATGATCTGGTTGCATCACGA
CGGGAATAACCCCTGGCACCATATTCTGGACGCGTTTATCATCGGTGTAA
CGATTATCGTGGTTGCCATCCCCGAGGGTCTTCCTCTTGCCGTGACCATC
TCCCTGGCTTATTCCACGAGGAAGATGTACAACGACCAGAACCTCATCCG
AGTCCTGGCGGCGTGCGAGACGATGGGGAACGCCACCAACATCTGCTCTG
ACAAGGGTCTTCCTCTTGCCGTGACCATCTCCCTGGCTTATTCCACGAGG
AAGATGTACAACGACCAGAACCTCATCCGAGTCCTGGCGGCGTGCGAGAC
GATGGGGAACGCCACCAACATCTGCTCTGACAAGACGGGAACGCTAACAG
AGAACCAGATGACGGCAGTGAAAGGGTGGTTCGCGGACGAGATCTTATCG
GGAGACTCGATCAAGCGCGCCGATTCGCTGTCGCCCCAGGCGCTGGACTT
GCTGTCGAAGAACATCGCCATCAACCGGTCTTGCGAAGTTCGCTTCAGGG
ACGACACGGGAACGCTAACAGAGAACCAGATGACGGCAGTGAAAGGGTGG
TTCGCGGACGAGATCTTATCGGGAGACTCGATCAAGCGCGCCGATTCGCT
GTCGCCCCAGGCGCTGGACTTGCTGTCGAAGAACATCGCCATCAACCGGT
CTTGCGAAGTTCGCTTCAGGGACGAC
back to top