mRNA_H-elongata_contig146842.3177.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146842.3177.1
Unique NamemRNA_H-elongata_contig146842.3177.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 9.970e-50
Identity = 87/125 (69.60%), Postives = 107/125 (85.60%), Query Frame = 1
Query:   10 LRETQAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDW-EKGPVQTHFRVLKGGLIRAVTESFYPSDR 381
            LR  +A+ A++ +P ED  ++LWL+RL P AL+SW+RPRFSVS+ITNDRP SL RLL SL+RSRLFGDE+A+DFY+ESSADD+TL +AE FS  W ++G VQTHFRVLKGGLIRAVTESF+PSDR
Sbjct:  623 LRAIKAEIAYVLLPEEDVPNSLWLARLAPTALSSWSRPRFSVSIITNDRPRSLSRLLDSLQRSRLFGDEMAVDFYIESSADDDTLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDR 747          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A6H5KY98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.370e-47
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 1
Query:   49 PAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDW-EKGPVQTHFRVLKGGLIRAVTESFYPSDRY 384
            P ED  H+LWL RL P AL+SW+RPRFSVS+ITNDRP SL RLL SL+RSRLFGDE+A+DFY+ESSADDETL +AE FS  W ++G VQTHFRVLKGGLIRAVTESF+PSDR+
Sbjct:  759 PEEDVPHSLWLPRLAPAALSSWSRPRFSVSIITNDRPRSLSRLLESLQRSRLFGDEMAVDFYIESSADDETLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDRH 871          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A836CAV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.740e-32
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 1
Query:   22 QAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDR--PVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEK-GPVQTHFRVLKGGLIRAVTESFYPSDRY 384
            Q  +A I MP +D   A W + LEPVALASW  P+FSVS+ITNDR  P SL RLL SL+ + LFGD + + F V+SSADDETL+L + FS  W K G   T  R LK GLIRAVTES+YP+D++
Sbjct:  298 QGASAPILMPPQDVASAAWTATLEPVALASWHIPKFSVSVITNDRREPWSLLRLLSSLRGAALFGDAVPVSFNVDSSADDETLQLVQEFSGLWGKRGRTSTSLRTLKAGLIRAVTESYYPTDKH 421          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: D8RSB7_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSB7_SELML)

HSP 1 Score: 105 bits (262), Expect = 9.470e-24
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   22 QAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            QA T  + +P    +HALW++ ++  AL  W   R S+S+IT +RP SL+RLLG+L  +   GDE+ + F ++S+ D ETL++    SF+W  G V    R+++GGLIRAV+ES+YP+ 
Sbjct:  297 QANTTVLQLPRRAIEHALWIADVKTSALQQWNTMRISISIITQNRPRSLKRLLGALASAYYVGDEIHLTFSIDSAVDAETLKIVH--SFEWPHGEVTIRRRIIQGGLIRAVSESWYPAS 413          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A6I9QBX0_ELAGV (uncharacterized protein LOC105033416 n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9QBX0_ELAGV)

HSP 1 Score: 105 bits (262), Expect = 9.990e-24
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   28 QTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            +TA + +P       LW++ L P AL +W R R SV++IT +R  SL+RLL SL+ +   GDE+ + F ++S  D+ TL++ E  S +W +GP     R+++GGLIRAV+ESFYPS 
Sbjct:  558 RTALVLLPRPVIPKVLWMANLRPTALPNWNRMRISVNIITQNRASSLQRLLRSLQNAHYLGDEVPLSFNMDSKVDEATLKIVE--SLEWAQGPKFVRRRIIQGGLIRAVSESFYPSS 672          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A5M3MJ83_CONPW (Uncharacterized protein n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MJ83_CONPW)

HSP 1 Score: 105 bits (261), Expect = 1.340e-23
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   31 TAFIAMPAEDADHALWLSRL---EPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            T  I +P  D  ++ W+  L   + + ++ W  P  +VS+ITNDRP SL RLL SL  +R FGD+L +   VE +ADDETLR+ + F  +W  G V  H RV+ GGL+ AV ES+YP D
Sbjct:  394 TTLIRLPRADLPYSSWMKALALEDWIRISDWNAPEVTVSVITNDRPASLRRLLNSLNNARYFGDDLLLRINVEQAADDETLRIVDGF--EWGYGNVFVHRRVIHGGLLPAVVESWYPRD 510          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A833R3K0_9POAL (Glycosyl transferase family 2 n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833R3K0_9POAL)

HSP 1 Score: 105 bits (261), Expect = 1.360e-23
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   28 QTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            QTA + +P       LW++ L P AL +W R R SV++IT +R  SL+RLL SL+ +   GDE+ + F ++S  D++TL+L    SF W  GP     R+++GGLIRAV+ES+YP+ 
Sbjct:  564 QTALVLLPRPSIQKVLWMANLRPAALPNWNRMRVSVNIITQNRVTSLQRLLKSLENAYYLGDEVPLSFNMDSKVDEDTLKLVG--SFQWPHGPKTIRRRIIQGGLIRAVSESWYPAS 678          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A5P1EX86_ASPOF (ENTH domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EX86_ASPOF)

HSP 1 Score: 104 bits (260), Expect = 1.950e-23
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   19 TQAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            +Q QTA + +P       LW+  L P AL +W R R SV++IT +R  SL RLL SL+ +   GDE+ + F ++S  D+ETL++    SF+W  GP     R+++GGLIRAV+ES+YPS 
Sbjct: 1656 SQNQTALVLLPRSSITKVLWIPSLRPAALTNWNRMRLSVNVITQNRATSLLRLLQSLQNAFYLGDEVPLSFNMDSRVDEETLKIVG--SFNWTHGPKVIKRRIIQGGLIRAVSESWYPSS 1773          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A6I9U7S1_SESIN (uncharacterized protein LOC105170732 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U7S1_SESIN)

HSP 1 Score: 104 bits (259), Expect = 2.530e-23
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   31 TAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPS 375
            T+ + +P      ALW++ L P AL  W R R +VS+IT +R  SL RLL SL  S   GDE+ I F ++S  D+ETL+L    +FDW  GP     R+++GGLIRAV+ES+YPS
Sbjct:  556 TSLVLLPKSTVPKALWMADLRPTALPFWNRMRLTVSIITQNRATSLARLLKSLSDSYYLGDEVPITFNMDSKVDEETLQLVT--TFDWPHGPKLLRRRIIQGGLIRAVSESWYPS 668          
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Match: A0A0D7BJL1_9AGAR (Uncharacterized protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BJL1_9AGAR)

HSP 1 Score: 103 bits (258), Expect = 3.240e-23
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   10 LRETQAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITNDRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEKGPVQTHFRVLKGGLIRAVTESFYPSD 378
            LR +     +IA+P  D  +A W+ RL      +W +PR  +S+IT DRP SL RLL SL R+R FGD L +   +E SAD+ET+++     F W  G +  H RV+ GGL+ AV ES+YP+D
Sbjct:  272 LRFSTPGIPWIALPRRDLAYAGWMGRLSLRDYHNWHQPRVDISIITKDRPHSLSRLLDSLARARFFGDTLNVRVNMEQSADEETMKIVR--DFRWPHGQIFLHHRVIHGGLLPAVVESWYPAD 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146842.3177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV6_ECTSI9.970e-5069.60Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A6H5KY98_9PHAE1.370e-4775.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAV5_9STRA3.740e-3257.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8RSB7_SELML9.470e-2442.86Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A6I9QBX0_ELAGV9.990e-2443.59uncharacterized protein LOC105033416 n=2 Tax=Cocos... [more]
A0A5M3MJ83_CONPW1.340e-2345.38Uncharacterized protein n=1 Tax=Coniophora puteana... [more]
A0A833R3K0_9POAL1.360e-2343.59Glycosyl transferase family 2 n=2 Tax=Carex little... [more]
A0A5P1EX86_ASPOF1.950e-2344.17ENTH domain-containing protein n=2 Tax=Asparagus o... [more]
A0A6I9U7S1_SESIN2.530e-2346.96uncharacterized protein LOC105170732 n=1 Tax=Sesam... [more]
A0A0D7BJL1_9AGAR3.240e-2343.90Uncharacterized protein n=1 Tax=Cylindrobasidium t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146842contigH-elongata_contig146842:343..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog4641.GSMUA_Achr9P20700_001
GOsGO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001085,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0007623,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048511,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsCOG5641@1,KOG1601@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.8842936-CDS-H-elongata_contig146842:342..5341622929871.8842936-CDS-H-elongata_contig146842:342..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146842 343..534 -
1691679189.9978626-CDS-H-elongata_contig146842:342..5341691679189.9978626-CDS-H-elongata_contig146842:342..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146842 343..534 -
1622929871.9189453-CDS-H-elongata_contig146842:1160..13761622929871.9189453-CDS-H-elongata_contig146842:1160..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146842 1161..1376 -
1691679190.0102665-CDS-H-elongata_contig146842:1160..13761691679190.0102665-CDS-H-elongata_contig146842:1160..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146842 1161..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146842.3177.1prot_H-elongata_contig146842.3177.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146842 343..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146842.3177.1

>prot_H-elongata_contig146842.3177.1 ID=prot_H-elongata_contig146842.3177.1|Name=mRNA_H-elongata_contig146842.3177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MPCLRETQAQTAFIAMPAEDADHALWLSRLEPVALASWARPRFSVSLITN
DRPVSLERLLGSLKRSRLFGDELAIDFYVESSADDETLRLAEAFSFDWEK
GPVQTHFRVLKGGLIRAVTESFYPSDRYFFFKNNF*
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mRNA from alignment at H-elongata_contig146842:343..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146842.3177.1 ID=mRNA_H-elongata_contig146842.3177.1|Name=mRNA_H-elongata_contig146842.3177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig146842:343..1376- (Himanthalia elongata Himel1 dioecious)
ATGCCATGCCTTCGCGAGACACAGGCGCAGACGGCGTTCATTGCCATGCC GGCAGAAGACGCGGACCATGCGCTGTGGCTGTCAAGGCTGGAGCCGGTCG CGCTGGCAAGCTGGGCGCGGCCGCGATTTTCCGTGTCGTTGATCACGAAC GACAGGCCGGTGTCCCTAGAGAGGCTGTTGGGGTCCTTGAAACGCTCGAG GCTGTTCGGGGACGAGGTAAATACTGTTGGACTTATACTATAGTATACTG TAGTAGAGTATTGAAGAACATGTGACTTTTAGACGAAACAGGAGAGAGAA CGAAGGTTGAAATTTTAAAATCGAGGTGCGAAGAGGCATGTTTCCCCCCT CTTTTTTATTTTAGTTTTTTCTGAGCGTTTGCTCTACAAGTTTTTTTGTT TTTTTTAACTGCACTCGCCAACTAGCATGGGTCACGTAAAAATGGAAAAC CAATGGAGGCGTTAATTGACTTGGTTTTAGTACAAGAACATAGACCGAGA AGGATGATAAAAAAGACTACCGAAGTACTGTTCCTGATGATTTCGAGAGA AATCCAATCTCTTCTCTCCTTTCTCCTTTGGTTTTCTATTTTAATCTCGA GGCGGGCATGACATGCCTACACGACCTCCTGCCACCCCCCCCCCACCCCG GATACGTGTGATGGGTGTTTTGTTGTAGAGCTGCTGTATGCGGGAAATGT TGTTCCGTAGAGAAGAGGCGCGGGGGGGGGATAGGACGTTCCCGTCCCCG TGATTGTCACACCATACTTGTCACGATGTAATCGGCGGAACGGTGACCCT TTTCTCTCTCTGACCACCCTAAATCGTACCGCCTTCAAAAAGCTGGCGAT CGATTTCTACGTGGAGAGCTCTGCGGATGACGAAACCCTCAGACTCGCGG AGGCGTTTTCGTTTGACTGGGAGAAAGGGCCGGTGCAGACCCATTTCCGG GTGCTCAAAGGAGGGCTAATTCGCGCCGTCACGGAGTCATTCTATCCTTC AGACAGGTATTTTTTTTTCAAAAACAATTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig146842:343..1376-

>mRNA_H-elongata_contig146842.3177.1 ID=mRNA_H-elongata_contig146842.3177.1|Name=mRNA_H-elongata_contig146842.3177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig146842:343..1376- (Himanthalia elongata Himel1 dioecious)
ATGCCATGCCTTCGCGAGACACAGGCGCAGACGGCGTTCATTGCCATGCC
GGCAGAAGACGCGGACCATGCGCTGTGGCTGTCAAGGCTGGAGCCGGTCG
CGCTGGCAAGCTGGGCGCGGCCGCGATTTTCCGTGTCGTTGATCACGAAC
GACAGGCCGGTGTCCCTAGAGAGGCTGTTGGGGTCCTTGAAACGCTCGAG
GCTGTTCGGGGACGAGATGCCATGCCTTCGCGAGACACAGGCGCAGACGG
CGTTCATTGCCATGCCGGCAGAAGACGCGGACCATGCGCTGTGGCTGTCA
AGGCTGGAGCCGGTCGCGCTGGCAAGCTGGGCGCGGCCGCGATTTTCCGT
GTCGTTGATCACGAACGACAGGCCGGTGTCCCTAGAGAGGCTGTTGGGGT
CCTTGAAACGCTCGAGGCTGTTCGGGGACGAGCTGGCGATCGATTTCTAC
GTGGAGAGCTCTGCGGATGACGAAACCCTCAGACTCGCGGAGGCGTTTTC
GTTTGACTGGGAGAAAGGGCCGGTGCAGACCCATTTCCGGGTGCTCAAAG
GAGGGCTAATTCGCGCCGTCACGGAGTCATTCTATCCTTCAGACAGGTAT
TTTTTTTTCAAAAACAATTTTTGACTGGCGATCGATTTCTACGTGGAGAG
CTCTGCGGATGACGAAACCCTCAGACTCGCGGAGGCGTTTTCGTTTGACT
GGGAGAAAGGGCCGGTGCAGACCCATTTCCGGGTGCTCAAAGGAGGGCTA
ATTCGCGCCGTCACGGAGTCATTCTATCCTTCAGACAGGTATTTTTTTTT
CAAAAACAATTTTTGA
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