mRNA_H-elongata_contig14670.3171.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14670.3171.1
Unique NamemRNA_H-elongata_contig14670.3171.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.010e-26
Identity = 62/131 (47.33%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:    1 RHISILNMEEVEAKAGFIHHNARVKAVVPADR---LLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARLGVIGWVAMLSATTAAGVSVCIASFIGGRHIGEAVVAVNVCFLSSRLLAAVRVSR 384
            R++    MEE EAKA ++ HN  V A V AD    LLEFSV+ GW PLC FL VSVPDVPFP+ NSR+++     R    GW+ M +  T AG SV  ASF GG+  G A+ A     L+SR   A+ + R
Sbjct:  319 RYMKTHTMEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREELKIRLNRFNRHGWLLMAATVTVAGASVAAASFFGGKRAGGALAATEALVLTSRFRKALALRR 449
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: M5GGC0_DACPD (Uncharacterized protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GGC0_DACPD)

HSP 1 Score: 81.3 bits (199), Expect = 1.950e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   46 GFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARLGVIG---WVAMLSA 255
             ++ HNAR+KA+VP ++LL ++VK GW PLCTFLGV VP+ PFPR+N   D+ K F  + ++G   W+  L A
Sbjct:  164 SYVAHNARMKALVPKEKLLVYNVKEGWAPLCTFLGVQVPNKPFPRNNETKDMHKRFLLMRIMGAGCWILELGA 236
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A2S6BQB3_9PEZI (Uncharacterized protein n=1 Tax=Cercospora berteroae TaxID=357750 RepID=A0A2S6BQB3_9PEZI)

HSP 1 Score: 80.5 bits (197), Expect = 3.370e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   43 AGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITK---IFARLGVIGWV 240
            AGF +HNA V+A+VPA+ LLE+  K GW+PLC FLG  VP  PFP SN  DD+ K   + ARL +  WV
Sbjct:  147 AGFENHNAHVRAIVPAENLLEWEPKDGWQPLCDFLGRPVPAEPFPYSNKGDDVAKGLLLAARLRIAKWV 215
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A167NI72_CALVF (Uncharacterized protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167NI72_CALVF)

HSP 1 Score: 79.7 bits (195), Expect = 7.240e-15
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   58 HNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARLGVIGWVAML 249
            H AR+KA+VP ++LL F+VK GWEPLCTFLG  VP +PFPR+N   D+ K F  +  +G  A L
Sbjct:  167 HKARMKAIVPKEKLLVFNVKEGWEPLCTFLGADVPKIPFPRNNETKDMQKRFFIMRTVGITAWL 230
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: UPI00109BF298 (uncharacterized protein LOC110252707 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF298)

HSP 1 Score: 79.3 bits (194), Expect = 7.340e-15
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   49 FIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDD 198
            ++ HNARVKA +P D+LL ++VK GW+PLC FLGV VPDVPFPR N +D+
Sbjct:  151 YLQHNARVKATIPRDKLLVYNVKQGWQPLCEFLGVPVPDVPFPRLNVKDE 200
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A8B2NY89_9HYPH (Uncharacterized protein n=2 Tax=Acuticoccus sediminis TaxID=2184697 RepID=A0A8B2NY89_9HYPH)

HSP 1 Score: 78.2 bits (191), Expect = 1.130e-14
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   43 AGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARL 222
            A F+ HN  VKA +PADRLL ++VK GWEPLC FLG+ VP  PFPR+N+R++   +   L
Sbjct:  147 AAFVAHNDAVKAAIPADRLLVYAVKDGWEPLCAFLGLPVPKEPFPRTNNREEFWDLIKSL 206
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A2U2CMB3_9RHOB (Uncharacterized protein n=2 Tax=Maritimibacter sp. 55A14 TaxID=2174844 RepID=A0A2U2CMB3_9RHOB)

HSP 1 Score: 77.8 bits (190), Expect = 1.180e-14
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   37 AKAGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARLG 225
            A A F  H A V+A VPADRLL F  + GWEPLC FLG  VPD P+PRSNSR++   + A  G
Sbjct:  130 AIATFKAHEAAVRAAVPADRLLVFEARDGWEPLCAFLGKEVPDTPYPRSNSREEFFALLAGEG 192
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A496WUU9_9GAMM (Sulfotransferase family protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WUU9_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   25 EEVEAKAGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFAR 219
            EE  A   F  HNA VKA VP +RLL F V+ GW+PLC FLGVSVPD PFP++NS +++   F++
Sbjct:  145 EEDYAIEVFEKHNAEVKAAVPPERLLVFDVREGWQPLCDFLGVSVPDEPFPKTNSTEELIGHFSK 209
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: UPI0003681157 (hypothetical protein n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI0003681157)

HSP 1 Score: 78.6 bits (192), Expect = 1.340e-14
Identity = 44/86 (51.16%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   25 EEVEAKAGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITK---IFARLGVIGWVAMLSATTAAGV 273
            ++  A+  F  H A VKA +PADRLL F  K GWEPLCTFLG  VPD PFP  N R D  K    F  L    W+  L A  AAGV
Sbjct:  145 DKEHARKVFEQHEADVKATIPADRLLVFHPKEGWEPLCTFLGEPVPDKPFPNVNDRADFRKRVAAFTWLNRAPWI--LGALVAAGV 228
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BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Match: A0A3A4ANV2_9ACTN (Sulfotransferase family protein n=1 Tax=Bailinhaonella thermotolerans TaxID=1070861 RepID=A0A3A4ANV2_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-14
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 RHISILNMEEVEAKAGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVPFPRSNSRDDITKIFARL 222
            R I +   +   A A F+ HN  V A VPADRLL + V+ GWEPLC FLGV VPD PFPR N   +  + F R+
Sbjct:  143 RDIGMTRFDREGAIAWFVAHNEAVLAGVPADRLLVYDVRQGWEPLCAFLGVPVPDAPFPRGNDAREFRRRFLRV 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14670.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU57_ECTSI7.010e-2647.33UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
M5GGC0_DACPD1.950e-1549.32Uncharacterized protein n=1 Tax=Dacryopinax primog... [more]
A0A2S6BQB3_9PEZI3.370e-1555.07Uncharacterized protein n=1 Tax=Cercospora bertero... [more]
A0A167NI72_CALVF7.240e-1554.69Uncharacterized protein n=1 Tax=Calocera viscosa (... [more]
UPI00109BF2987.340e-1564.00uncharacterized protein LOC110252707 n=1 Tax=Exaip... [more]
A0A8B2NY89_9HYPH1.130e-1455.00Uncharacterized protein n=2 Tax=Acuticoccus sedimi... [more]
A0A2U2CMB3_9RHOB1.180e-1457.14Uncharacterized protein n=2 Tax=Maritimibacter sp.... [more]
A0A496WUU9_9GAMM1.260e-1455.38Sulfotransferase family protein n=2 Tax=Gammaprote... [more]
UPI00036811571.340e-1451.16hypothetical protein n=1 Tax=Henriciella marina Ta... [more]
A0A3A4ANV2_9ACTN1.500e-1450.00Sulfotransferase family protein n=1 Tax=Bailinhaon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14670contigH-elongata_contig14670:6341..7444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D8LU57
Preferred nameSTP22
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size523
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14670.3171.1prot_H-elongata_contig14670.3171.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14670 6362..7329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.3864274-UTR-H-elongata_contig14670:6340..63611622929871.3864274-UTR-H-elongata_contig14670:6340..6361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14670 6341..6361 +
1691679189.8009572-UTR-H-elongata_contig14670:6340..63611691679189.8009572-UTR-H-elongata_contig14670:6340..6361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14670 6341..6361 +
1622929871.445591-UTR-H-elongata_contig14670:7329..74441622929871.445591-UTR-H-elongata_contig14670:7329..7444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14670 7330..7444 +
1691679189.8332126-UTR-H-elongata_contig14670:7329..74441691679189.8332126-UTR-H-elongata_contig14670:7329..7444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14670 7330..7444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.4035866-CDS-H-elongata_contig14670:6361..64361622929871.4035866-CDS-H-elongata_contig14670:6361..6436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 6362..6436 +
1691679189.8108807-CDS-H-elongata_contig14670:6361..64361691679189.8108807-CDS-H-elongata_contig14670:6361..6436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 6362..6436 +
1622929871.4181511-CDS-H-elongata_contig14670:6805..69271622929871.4181511-CDS-H-elongata_contig14670:6805..6927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 6806..6927 +
1691679189.8182054-CDS-H-elongata_contig14670:6805..69271691679189.8182054-CDS-H-elongata_contig14670:6805..6927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 6806..6927 +
1622929871.432753-CDS-H-elongata_contig14670:7139..73291622929871.432753-CDS-H-elongata_contig14670:7139..7329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 7140..7329 +
1691679189.8257332-CDS-H-elongata_contig14670:7139..73291691679189.8257332-CDS-H-elongata_contig14670:7139..7329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14670 7140..7329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14670.3171.1

>prot_H-elongata_contig14670.3171.1 ID=prot_H-elongata_contig14670.3171.1|Name=mRNA_H-elongata_contig14670.3171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MEEVEAKAGFIHHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVSVPDVP
FPRSNSRDDITKIFARLGVIGWVAMLSATTAAGVSVCIASFIGGRHIGEA
VVAVNVCFLSSRLLAAVRVSRFYRKRAT*
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mRNA from alignment at H-elongata_contig14670:6341..7444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14670.3171.1 ID=mRNA_H-elongata_contig14670.3171.1|Name=mRNA_H-elongata_contig14670.3171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig14670:6341..7444+ (Himanthalia elongata Himel1 dioecious)
CGCCACATCTCCATCCTCAATATGGAAGAGGTGGAAGCGAAGGCGGGCTT
CATCCACCACAACGCACGAGTGAAGGCTGTAGTGCCCGCCGACAGGGTGC
GCAAAGTCCTTCTCACCGCCCGAACCCCTTCTTCATTCCGCATAACACAT
AATATATTGAAGCCATGAGACCTCGTTTGCTGTACGTACGGTCTTGTGAG
GTCAAAACATAGACATCTACAAAAGTAGAAAATCCGGTACCGATGCACTT
TATAGCGGAGGAATGTGATTTTCCATAATTAATTGGGTCCTCTGCCCCGT
CAGCGTATACCCCCCACTAGGTGTGGTATATTATGGCTTAAGTCGAGGGC
CACATAGTTTCGGTTGCATCGCCTGCTACTGTTTATTTAGGCCAACACAT
CGACCAACTTCCCGACCATTGCTGCCCCTACCCTCTGTGATCCGAATGGA
TCGACGGATGCGCAGCTCCTAGAGTTTTCAGTCAAGAGTGGTTGGGAGCC
CCTGTGCACCTTCCTCGGCGTATCTGTTCCAGATGTTCCCTTCCCGAGAT
CAAACTCTCGCGATGATATCACGAAGATTTTTGCAAGGTTCGTCGATGCG
CTGTATTAGAATTCGTTTGAATCGGTTATTTCTCGTACATGGCTAATCGC
TTCAAGCTTCGTCAAGGTAGCAAGTCAATGGGGCACGCAGCGTATGTCCT
GACGAAAGCCACCAATTGGTTGTTCTCGAGGGAGATGTGTGAATATTCAC
CTTTAATCGCTATTTTATGGCCTTGGTCTCCGATCCCCAAATAATCCAGA
TTGGGAGTAATAGGGTGGGTAGCGATGCTATCGGCAACTACTGCTGCTGG
AGTCAGCGTTTGCATCGCCTCTTTCATCGGCGGGAGGCACATCGGGGAAG
CGGTTGTCGCGGTGAACGTGTGTTTCCTGTCCTCGAGACTGCTGGCGGCC
GTGCGAGTGAGCCGGTTTTATAGGAAGAGGGCTACTTGAATGTCAACCGG
AATGAGTCATGCTTGGGAGATACAAAGCGGGTACATCTGGAGTGGGATAT
AACTTGGGACTTGCCCCGCTTACAATCATAGCACGTACTGCCTGTCTCTG
CAAC
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Coding sequence (CDS) from alignment at H-elongata_contig14670:6341..7444+

>mRNA_H-elongata_contig14670.3171.1 ID=mRNA_H-elongata_contig14670.3171.1|Name=mRNA_H-elongata_contig14670.3171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig14670:6341..7444+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGTGGAAGCGAAGGCGGGCTTCATCCACCACAACGCACGAGT
GAAGGCTGTAGTGCCCGCCGACAGGATGGAAGAGGTGGAAGCGAAGGCGG
GCTTCATCCACCACAACGCACGAGTGAAGGCTGTAGTGCCCGCCGACAGG
CTCCTAGAGTTTTCAGTCAAGAGTGGTTGGGAGCCCCTGTGCACCTTCCT
CGGCGTATCTGTTCCAGATGTTCCCTTCCCGAGATCAAACTCTCGCGATG
ATATCACGAAGATTTTTGCAAGCTCCTAGAGTTTTCAGTCAAGAGTGGTT
GGGAGCCCCTGTGCACCTTCCTCGGCGTATCTGTTCCAGATGTTCCCTTC
CCGAGATCAAACTCTCGCGATGATATCACGAAGATTTTTGCAAGATTGGG
AGTAATAGGGTGGGTAGCGATGCTATCGGCAACTACTGCTGCTGGAGTCA
GCGTTTGCATCGCCTCTTTCATCGGCGGGAGGCACATCGGGGAAGCGGTT
GTCGCGGTGAACGTGTGTTTCCTGTCCTCGAGACTGCTGGCGGCCGTGCG
AGTGAGCCGGTTTTATAGGAAGAGGGCTACTTGAATTGGGAGTAATAGGG
TGGGTAGCGATGCTATCGGCAACTACTGCTGCTGGAGTCAGCGTTTGCAT
CGCCTCTTTCATCGGCGGGAGGCACATCGGGGAAGCGGTTGTCGCGGTGA
ACGTGTGTTTCCTGTCCTCGAGACTGCTGGCGGCCGTGCGAGTGAGCCGG
TTTTATAGGAAGAGGGCTACTTGA
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