mRNA_H-elongata_contig146644.3167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146644.3167.1
Unique NamemRNA_H-elongata_contig146644.3167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146644.3167.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 GAEALERVAIALGARAALPVCGPLIRKGMASWTWQQQHAALTGIGVLAN 147
            G+EALERVA ALGARAALPVC  L+++G+A W WQQQHAAL+ +G+LA+
Sbjct:  511 GSEALERVARALGARAALPVCRQLVKEGLAGWAWQQQHAALSALGILAD 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146644.3167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0F5_ECTSI2.980e-1469.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146644contigH-elongata_contig146644:446..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue8.1e-12
Seed eggNOG ortholog2880.D7G0F5
Preferred nameIPO5
KEGG koko:K20222
KEGG TC1.I.1
GOsGO:0000060,GO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042277,GO:0042306,GO:0042307,GO:0042886,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090316,GO:1900180,GO:1900182,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-02_000610.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.0694032-CDS-H-elongata_contig146644:445..5981622929871.0694032-CDS-H-elongata_contig146644:445..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146644 446..598 +
1691679189.7154036-CDS-H-elongata_contig146644:445..5981691679189.7154036-CDS-H-elongata_contig146644:445..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146644 446..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146644.3167.1prot_H-elongata_contig146644.3167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146644 446..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146644.3167.1

>prot_H-elongata_contig146644.3167.1 ID=prot_H-elongata_contig146644.3167.1|Name=mRNA_H-elongata_contig146644.3167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
GAEALERVAIALGARAALPVCGPLIRKGMASWTWQQQHAALTGIGVLANG
T
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mRNA from alignment at H-elongata_contig146644:446..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146644.3167.1 ID=mRNA_H-elongata_contig146644.3167.1|Name=mRNA_H-elongata_contig146644.3167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig146644:446..598+ (Himanthalia elongata Himel1 dioecious)
GGGGCAGAGGCTCTGGAGCGTGTAGCTATTGCGCTCGGGGCGAGGGCTGC
ATTACCGGTATGCGGGCCATTGATCAGAAAGGGGATGGCGAGCTGGACCT
GGCAGCAGCAACACGCCGCGCTTACAGGCATCGGAGTCCTTGCCAACGGT
ACG
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Coding sequence (CDS) from alignment at H-elongata_contig146644:446..598+

>mRNA_H-elongata_contig146644.3167.1 ID=mRNA_H-elongata_contig146644.3167.1|Name=mRNA_H-elongata_contig146644.3167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig146644:446..598+ (Himanthalia elongata Himel1 dioecious)
GGGGCAGAGGCTCTGGAGCGTGTAGCTATTGCGCTCGGGGCGAGGGCTGC
ATTACCGGTATGCGGGCCATTGATCAGAAAGGGGATGGCGAGCTGGACCT
GGCAGCAGCAACACGCCGCGCTTACAGGCATCGGAGTCCTTGCCAACGGT
ACGGGGGCAGAGGCTCTGGAGCGTGTAGCTATTGCGCTCGGGGCGAGGGC
TGCATTACCGGTATGCGGGCCATTGATCAGAAAGGGGATGGCGAGCTGGA
CCTGGCAGCAGCAACACGCCGCGCTTACAGGCATCGGAGTCCTTGCCAAC
GGTACG
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