mRNA_H-elongata_contig146343.3157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146343.3157.1
Unique NamemRNA_H-elongata_contig146343.3157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: D7FM32_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM32_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 2.890e-70
Identity = 108/127 (85.04%), Postives = 121/127 (95.28%), Query Frame = 1
Query:    4 KQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            +Q GYQELVNAIIRPPRA+Y+V  LGP EFEFLGKAFKR+DFRLLN+RGH+LECSHW+P+GWRRAE+LPC+VYMHGNSSAR EALPQLSLALSLGATLV+FDFAGSGRSGG+HVSLGYYERDDLK +
Sbjct:   35 EQAGYQELVNAIIRPPRARYEVEALGPVEFEFLGKAFKRLDFRLLNDRGHVLECSHWQPNGWRRAERLPCVVYMHGNSSARVEALPQLSLALSLGATLVSFDFAGSGRSGGEHVSLGYYERDDLKAV 161          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A6H5L444_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L444_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 5.150e-68
Identity = 105/128 (82.03%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            + + GYQELVNAIIRPPRA+Y+V  LGP EFEF+GKAFKR+DFRLLN+RGH+LECSHW+P GWRRAE+LPC+VYMHGNSSAR EALPQLSLALSLGATLV+FDFAGSG+SGG+HVSLGYYERDDLK +
Sbjct:   91 MAKAGYQELVNAIIRPPRARYEVEALGPVEFEFVGKAFKRLDFRLLNDRGHVLECSHWQPSGWRRAERLPCVVYMHGNSSARVEALPQLSLALSLGATLVSFDFAGSGKSGGEHVSLGYYERDDLKAV 218          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A836CG95_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG95_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.230e-55
Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 1
Query:   22 ELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            ELVNAIIRPPRA+Y +  LGP +F+F G+AF+R DF L N RG  L+CSHW+P GWR AEQLPC+VY+HGNSSARPEALPQL+L LSLGATL+AFD +GSG S G++VSLGY+ERDDL  +
Sbjct:    2 ELVNAIIRPPRARYSIGSLGPRKFKFNGRAFRRSDFELTNPRGMALKCSHWEPDGWRVAEQLPCVVYLHGNSSARPEALPQLALVLSLGATLLAFDCSGSGMSDGEYVSLGYWERDDLGAV 122          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2G2Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.160e-50
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 1
Query:    7 QVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            QVGYQELVNAIIRPPRA YD A LGP +F F  + F+R DF L NERG    CSHW+P   RRA +LPC++YMHGNSSAR EA+PQLSL L+LGAT+ AFDF+GSGRS G++VSLG++ER+DLKV+
Sbjct:   42 QVGYQELVNAIIRPPRADYDDAHLGPKQFYFGKEKFQRTDFELRNERGMRFVCSHWEPMN-RRAAELPCVIYMHGNSSARVEAVPQLSLCLALGATMFAFDFSGSGRSDGEYVSLGFFEREDLKVV 166          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2SU53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU53_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.450e-49
Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            + +VGYQELVNAIIRPPRA+Y    LGP EF F G  F R DF L NERG  ++CSHW+P   R+A  LPC++YMHGN+SARPEAL QL+L LSLGAT+VAFDF GSG S GD VSLGY+ER+DLKV+
Sbjct:   54 MAKVGYQELVNAIIRPPRAEYLPEQLGPTEFTFGGHQFTRTDFELTNERGMKIQCSHWEPVE-RKAVTLPCVIYMHGNASARPEALSQLALCLSLGATMVAFDFCGSGLSEGDWVSLGYFEREDLKVV 180          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2YIV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIV8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.240e-47
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVIFC-VRAYEVITRL 420
            GYQELVNAIIRPPRA Y +  LGP  F F GK F R DF L  +RG+ LECSHW+P   R  +++P ++YMHGNSSAR E +PQLS  LSLG  + AFDFAGSG+S G++VSLGY+ER+DL  I   +RA  V++ +
Sbjct:   91 GYQELVNAIIRPPRADYKMEALGPPAFNFCGKRFTRTDFTLRTKRGYNLECSHWEPVE-RATDRIPVVIYMHGNSSARVEVIPQLSYLLSLGVAVFAFDFAGSGKSDGEYVSLGYFEREDLSCIVAHLRATNVVSTI 226          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7R9VXE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.670e-46
Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLK-VIFCVRAYEVITRL 420
            GYQELVNAIIRPPRA+Y    LGP  F F G+ F R DF L  +RG  L+CSHW+P   R + ++P ++YMHGNSSAR E LPQLS  LSLG  + AFDFAGSG+S G++VSLGY+ER+DL  VI  +RA +V++ +
Sbjct:    1 GYQELVNAIIRPPRAQYKEENLGPPAFSFCGRRFTRTDFTLRTKRGLNLQCSHWEPVE-RTSSRIPVVIYMHGNSSARVEVLPQLSYLLSLGVAVFAFDFAGSGKSDGEYVSLGYFEREDLMCVIAHLRATDVVSTI 136          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A1E7FSK1_9STRA (Alpha/beta-hydrolase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSK1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.970e-46
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLK-VIFCVRAYEVITRL 420
            + ++GYQELVNAIIRPPRA Y +  LGP  F F GK F R DF L  +RG+ LECSHW+P   R  +++P ++YMHGNSSAR E LPQLS  LS+G  + +FDFAGSG+S G+ VSLGYYER+DL  V+  +RA  V++ +
Sbjct:    3 MARLGYQELVNAIIRPPRADYKMEALGPPAFTFCGKRFTRTDFTLKTKRGYNLECSHWEPVE-RITDRIPVVIYMHGNSSARVEVLPQLSYLLSMGVAVFSFDFAGSGKSDGEFVSLGYYEREDLSCVVAHLRATNVVSTI 142          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: F0YJU1_AURAN (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJU1_AURAN)

HSP 1 Score: 159 bits (401), Expect = 1.640e-45
Identity = 78/124 (62.90%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            GY ELVNAIIRPPRA+YD+  LGP EF F GK + R D  L+N+RG  L+CSHW+P   R AE LPC+V+MHGNSSAR E L QLS+ L  G TL +FD AGSG+S G +VSLGY+E+DDL+V+
Sbjct:    4 GYDELVNAIIRPPRAEYDIERLGPREFAFCGKQYMRTDLVLVNQRGLALQCSHWEPVE-RVAEALPCVVFMHGNSSARLEGLNQLSVCLGFGVTLFSFDCAGSGKSEGKYVSLGYWEKDDLRVV 126          
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A4D9D9Z2_9STRA (RanBP2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9Z2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.050e-45
Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    7 QVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKP-------------------HGWRRAEQ--LPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
            ++GYQE+V+AIIRPPRA+Y +  LGP  F+F G+AF+R DF ++NERG  ++CS W+P                    G  RA++  LPC+VYMHGNSSAR EALPQLSL LSLG TLVA DFAGSGRS G+ VSLGYYE+DDLK +
Sbjct:   26 RMGYQEVVSAIIRPPRAEYSLTHLGPPTFDFCGRAFQRNDFVIVNERGLRVQCSQWEPVEYPLEKDEGNGGAGKEGTSGQARAQRGPLPCVVYMHGNSSARVEALPQLSLCLSLGITLVALDFAGSGRSDGEFVSLGYYEKDDLKAV 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM32_ECTSI2.890e-7085.04RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L444_9PHAE5.150e-6882.03RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A836CG95_9STRA5.230e-5570.25Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2G2Q1_9STRA2.160e-5068.25Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2SU53_9STRA1.450e-4967.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2YIV8_9STRA4.240e-4758.39Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7R9VXE1_9STRA2.670e-4658.39Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1E7FSK1_9STRA4.970e-4656.74Alpha/beta-hydrolase (Fragment) n=1 Tax=Fragilario... [more]
F0YJU1_AURAN1.640e-4562.90Hydrolase_4 domain-containing protein (Fragment) n... [more]
A0A4D9D9Z2_9STRA4.050e-4557.82RanBP2-type domain-containing protein n=2 Tax=Mono... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146343contigH-elongata_contig146343:144..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146343.3157.1prot_H-elongata_contig146343.3157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146343 188..765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.0549119-UTR-H-elongata_contig146343:143..1871622929870.0549119-UTR-H-elongata_contig146343:143..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146343 144..187 -
1691679189.299946-UTR-H-elongata_contig146343:143..1871691679189.299946-UTR-H-elongata_contig146343:143..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146343 144..187 -
1622929870.0950599-UTR-H-elongata_contig146343:765..8261622929870.0950599-UTR-H-elongata_contig146343:765..826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146343 766..826 -
1691679189.3256996-UTR-H-elongata_contig146343:765..8261691679189.3256996-UTR-H-elongata_contig146343:765..826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146343 766..826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.0716789-CDS-H-elongata_contig146343:187..3961622929870.0716789-CDS-H-elongata_contig146343:187..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146343 188..396 -
1691679189.308781-CDS-H-elongata_contig146343:187..3961691679189.308781-CDS-H-elongata_contig146343:187..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146343 188..396 -
1622929870.0829794-CDS-H-elongata_contig146343:659..7651622929870.0829794-CDS-H-elongata_contig146343:659..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146343 660..765 -
1691679189.3166735-CDS-H-elongata_contig146343:659..7651691679189.3166735-CDS-H-elongata_contig146343:659..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146343 660..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146343.3157.1

>prot_H-elongata_contig146343.3157.1 ID=prot_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MMLRCSGRRSSNSWERRSNGLTSGSLTNEGTYSSAVTGSPMAGDEPSSCR
ASCTCTEIRRRGRRRFPSFPWRSAWGRPLWRLISREAGAAEATTSASGTT
REMI*
back to top

mRNA from alignment at H-elongata_contig146343:144..826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146343.3157.1 ID=mRNA_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig146343:144..826- (Himanthalia elongata Himel1 dioecious)
CTGAAACAGGTGGGCTACCAAGAGCTTGTCAACGCGATAATTCGCCCGCC GCGAGCAAAGTATGATGTTGCGGTGCTCGGGCCGGCGGAGTTCGAATTCT TGGGAAAGGCGTTCAAACGGATTGACTTCCGGCTCCTTAACGAACGAGGG CACCTACTCGAGTGCAGGTGCCAACAGAGAGAAGGAGGCAGGGTGCCACG CGACGTTATGATTAATGTTTCGAGCGCGCTGGCGACGAATTTCTTTGGCT GGCGGTGATATTTTAGGGGTGGGGGGAGGTCCGCCTTTTTCTCTATCGTT GACCCCCGATAAAGCATCGTATCGAAGAGTAACCAACTCGCTCTTCCCAT CGATAAGAAACCCCGCTCCTGCTCTCCGAGTGAGTCGTCCTTCTCGCTGC CCTGGCTCGTGCTCACCCTACGCCGACCAGTCACTGGAAGCCCCATGGCT GGAGACGAGCCGAGCAGCTGCCGTGCATCGTGTACATGCACGGAAATTCG TCGGCGAGGCCGGAGGCGCTTCCCCAGCTTTCCCTGGCGCTCAGCCTGGG GGCGACCCTTGTGGCGTTTGATTTCGCGGGAAGCGGGCGCAGCGGAGGCG ACCACGTCAGCCTCGGGTACTACGAGAGAGATGATTTAAAGGTGATATTT TGTGTGCGTGCGTATGAGGTTATCACTAGACTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig146343:144..826-

>mRNA_H-elongata_contig146343.3157.1 ID=mRNA_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig146343:144..826- (Himanthalia elongata Himel1 dioecious)
ATGATGTTGCGGTGCTCGGGCCGGCGGAGTTCGAATTCTTGGGAAAGGCG
TTCAAACGGATTGACTTCCGGCTCCTTAACGAACGAGGGCACCTACTCGA
GTGCAGATGATGTTGCGGTGCTCGGGCCGGCGGAGTTCGAATTCTTGGGA
AAGGCGTTCAAACGGATTGACTTCCGGCTCCTTAACGAACGAGGGCACCT
ACTCGAGTGCAGTCACTGGAAGCCCCATGGCTGGAGACGAGCCGAGCAGC
TGCCGTGCATCGTGTACATGCACGGAAATTCGTCGGCGAGGCCGGAGGCG
CTTCCCCAGCTTTCCCTGGCGCTCAGCCTGGGGGCGACCCTTGTGGCGTT
TGATTTCGCGGGAAGCGGGCGCAGCGGAGGCGACCACGTCAGCCTCGGGT
ACTACGAGAGAGATGATTTAATCACTGGAAGCCCCATGGCTGGAGACGAG
CCGAGCAGCTGCCGTGCATCGTGTACATGCACGGAAATTCGTCGGCGAGG
CCGGAGGCGCTTCCCCAGCTTTCCCTGGCGCTCAGCCTGGGGGCGACCCT
TGTGGCGTTTGATTTCGCGGGAAGCGGGCGCAGCGGAGGCGACCACGTCA
GCCTCGGGTACTACGAGAGAGATGATTTAA
back to top