mRNA_H-elongata_contig146343.3157.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: D7FM32_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM32_ECTSI) HSP 1 Score: 234 bits (597), Expect = 2.890e-70 Identity = 108/127 (85.04%), Postives = 121/127 (95.28%), Query Frame = 1
Query: 4 KQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
+Q GYQELVNAIIRPPRA+Y+V LGP EFEFLGKAFKR+DFRLLN+RGH+LECSHW+P+GWRRAE+LPC+VYMHGNSSAR EALPQLSLALSLGATLV+FDFAGSGRSGG+HVSLGYYERDDLK +
Sbjct: 35 EQAGYQELVNAIIRPPRARYEVEALGPVEFEFLGKAFKRLDFRLLNDRGHVLECSHWQPNGWRRAERLPCVVYMHGNSSARVEALPQLSLALSLGATLVSFDFAGSGRSGGEHVSLGYYERDDLKAV 161
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A6H5L444_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L444_9PHAE) HSP 1 Score: 229 bits (585), Expect = 5.150e-68 Identity = 105/128 (82.03%), Postives = 120/128 (93.75%), Query Frame = 1
Query: 1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
+ + GYQELVNAIIRPPRA+Y+V LGP EFEF+GKAFKR+DFRLLN+RGH+LECSHW+P GWRRAE+LPC+VYMHGNSSAR EALPQLSLALSLGATLV+FDFAGSG+SGG+HVSLGYYERDDLK +
Sbjct: 91 MAKAGYQELVNAIIRPPRARYEVEALGPVEFEFVGKAFKRLDFRLLNDRGHVLECSHWQPSGWRRAERLPCVVYMHGNSSARVEALPQLSLALSLGATLVSFDFAGSGKSGGEHVSLGYYERDDLKAV 218
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A836CG95_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG95_9STRA) HSP 1 Score: 183 bits (464), Expect = 5.230e-55 Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 1
Query: 22 ELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
ELVNAIIRPPRA+Y + LGP +F+F G+AF+R DF L N RG L+CSHW+P GWR AEQLPC+VY+HGNSSARPEALPQL+L LSLGATL+AFD +GSG S G++VSLGY+ERDDL +
Sbjct: 2 ELVNAIIRPPRARYSIGSLGPRKFKFNGRAFRRSDFELTNPRGMALKCSHWEPDGWRVAEQLPCVVYLHGNSSARPEALPQLALVLSLGATLLAFDCSGSGMSDGEYVSLGYWERDDLGAV 122
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2G2Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q1_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.160e-50 Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 1
Query: 7 QVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
QVGYQELVNAIIRPPRA YD A LGP +F F + F+R DF L NERG CSHW+P RRA +LPC++YMHGNSSAR EA+PQLSL L+LGAT+ AFDF+GSGRS G++VSLG++ER+DLKV+
Sbjct: 42 QVGYQELVNAIIRPPRADYDDAHLGPKQFYFGKEKFQRTDFELRNERGMRFVCSHWEPMN-RRAAELPCVIYMHGNSSARVEAVPQLSLCLALGATMFAFDFSGSGRSDGEYVSLGFFEREDLKVV 166
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2SU53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU53_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.450e-49 Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 1
Query: 1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
+ +VGYQELVNAIIRPPRA+Y LGP EF F G F R DF L NERG ++CSHW+P R+A LPC++YMHGN+SARPEAL QL+L LSLGAT+VAFDF GSG S GD VSLGY+ER+DLKV+
Sbjct: 54 MAKVGYQELVNAIIRPPRAEYLPEQLGPTEFTFGGHQFTRTDFELTNERGMKIQCSHWEPVE-RKAVTLPCVIYMHGNASARPEALSQLALCLSLGATMVAFDFCGSGLSEGDWVSLGYFEREDLKVV 180
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7S2YIV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIV8_9STRA) HSP 1 Score: 160 bits (406), Expect = 4.240e-47 Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 1
Query: 13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVIFC-VRAYEVITRL 420
GYQELVNAIIRPPRA Y + LGP F F GK F R DF L +RG+ LECSHW+P R +++P ++YMHGNSSAR E +PQLS LSLG + AFDFAGSG+S G++VSLGY+ER+DL I +RA V++ +
Sbjct: 91 GYQELVNAIIRPPRADYKMEALGPPAFNFCGKRFTRTDFTLRTKRGYNLECSHWEPVE-RATDRIPVVIYMHGNSSARVEVIPQLSYLLSLGVAVFAFDFAGSGKSDGEYVSLGYFEREDLSCIVAHLRATNVVSTI 226
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A7R9VXE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE1_9STRA) HSP 1 Score: 156 bits (394), Expect = 2.670e-46 Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 1
Query: 13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLK-VIFCVRAYEVITRL 420
GYQELVNAIIRPPRA+Y LGP F F G+ F R DF L +RG L+CSHW+P R + ++P ++YMHGNSSAR E LPQLS LSLG + AFDFAGSG+S G++VSLGY+ER+DL VI +RA +V++ +
Sbjct: 1 GYQELVNAIIRPPRAQYKEENLGPPAFSFCGRRFTRTDFTLRTKRGLNLQCSHWEPVE-RTSSRIPVVIYMHGNSSARVEVLPQLSYLLSLGVAVFAFDFAGSGKSDGEYVSLGYFEREDLMCVIAHLRATDVVSTI 136
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A1E7FSK1_9STRA (Alpha/beta-hydrolase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSK1_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.970e-46 Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 1
Query: 1 LKQVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLK-VIFCVRAYEVITRL 420
+ ++GYQELVNAIIRPPRA Y + LGP F F GK F R DF L +RG+ LECSHW+P R +++P ++YMHGNSSAR E LPQLS LS+G + +FDFAGSG+S G+ VSLGYYER+DL V+ +RA V++ +
Sbjct: 3 MARLGYQELVNAIIRPPRADYKMEALGPPAFTFCGKRFTRTDFTLKTKRGYNLECSHWEPVE-RITDRIPVVIYMHGNSSARVEVLPQLSYLLSMGVAVFSFDFAGSGKSDGEFVSLGYYEREDLSCVVAHLRATNVVSTI 142
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: F0YJU1_AURAN (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJU1_AURAN) HSP 1 Score: 159 bits (401), Expect = 1.640e-45 Identity = 78/124 (62.90%), Postives = 95/124 (76.61%), Query Frame = 1
Query: 13 GYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKPHGWRRAEQLPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
GY ELVNAIIRPPRA+YD+ LGP EF F GK + R D L+N+RG L+CSHW+P R AE LPC+V+MHGNSSAR E L QLS+ L G TL +FD AGSG+S G +VSLGY+E+DDL+V+
Sbjct: 4 GYDELVNAIIRPPRAEYDIERLGPREFAFCGKQYMRTDLVLVNQRGLALQCSHWEPVE-RVAEALPCVVFMHGNSSARLEGLNQLSVCLGFGVTLFSFDCAGSGKSEGKYVSLGYWEKDDLRVV 126
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Match: A0A4D9D9Z2_9STRA (RanBP2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9Z2_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.050e-45 Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 1
Query: 7 QVGYQELVNAIIRPPRAKYDVAVLGPAEFEFLGKAFKRIDFRLLNERGHLLECSHWKP-------------------HGWRRAEQ--LPCIVYMHGNSSARPEALPQLSLALSLGATLVAFDFAGSGRSGGDHVSLGYYERDDLKVI 384
++GYQE+V+AIIRPPRA+Y + LGP F+F G+AF+R DF ++NERG ++CS W+P G RA++ LPC+VYMHGNSSAR EALPQLSL LSLG TLVA DFAGSGRS G+ VSLGYYE+DDLK +
Sbjct: 26 RMGYQEVVSAIIRPPRAEYSLTHLGPPTFDFCGRAFQRNDFVIVNERGLRVQCSQWEPVEYPLEKDEGNGGAGKEGTSGQARAQRGPLPCVVYMHGNSSARVEALPQLSLCLSLGITLVALDFAGSGRSDGEFVSLGYYEKDDLKAV 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146343.3157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146343.3157.1 >prot_H-elongata_contig146343.3157.1 ID=prot_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MMLRCSGRRSSNSWERRSNGLTSGSLTNEGTYSSAVTGSPMAGDEPSSCRback to top mRNA from alignment at H-elongata_contig146343:144..826- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146343.3157.1 ID=mRNA_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig146343:144..826- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146343:144..826- >mRNA_H-elongata_contig146343.3157.1 ID=mRNA_H-elongata_contig146343.3157.1|Name=mRNA_H-elongata_contig146343.3157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig146343:144..826- (Himanthalia elongata Himel1 dioecious)back to top |