mRNA_H-elongata_contig146303.3155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146303.3155.1
Unique NamemRNA_H-elongata_contig146303.3155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.800e-52
Identity = 96/124 (77.42%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 PTVPVLELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSKPRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFKKGEVTAKALIATLRSLKRLKVVRAAGMMTYVV 372
            P V  +ELVTV EL+ VPRSTR RLTI QVNAAV DIQKA E+RHAFLSKPR KMS+KQ  RL EL  Q+VPAHGG PFIAE DLR LP+FKKGE+TAKALIATLR+LKRLK VR AGMMTYVV
Sbjct:    2 PEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 125
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BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.280e-49
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:    1 PTVPVLELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSKPRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFKKGEVTAKALIATLRSLKRLKVVRAAGMMTYVV 372
            P V  +ELVTV EL  VPRSTR RLTI QVNAAV DIQKA E+RHAFLSKPR KMS+KQ  RL EL  Q+VPAHGG PFIAE DLR LP+FKKGE+TAKALIATLR+LKRLK VR AGMMTYVV
Sbjct:  240 PKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 363
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BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Match: A0A835YPY4_9STRA (C18orf24 protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.720e-21
Identity = 48/124 (38.71%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:   10 PVLELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSKPRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFK-KGEVTAKALIATLRSLKRLKVVRAAGMMTYVVIG 378
            P ++LVT  EL+ +P++TR RL +  VNAA+ ++Q     ++  L++P++K+++K   R  +    + P H G  F+ ES++R   A   KGE TA+ ++ +LRSLKR + +RA G+MTYVV+ 
Sbjct:    2 PCIQLVTSAELQALPKTTRGRLQLDHVNAAITELQAVLTTKYTLLARPKSKLNEKLRRRYEQYAAAEAPEHEGAHFLTESEMRSCAALGGKGEATARLMLNSLRSLKRFRPLRANGVMTYVVVA 125
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BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Match: UPI001E1D1615 (spindle and kinetochore-associated protein 1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D1615)

HSP 1 Score: 75.9 bits (185), Expect = 5.140e-14
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:   16 LELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSKPRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFKKGEVTAKALIATLRSLKRLKVVRAAG-MMTYVVI 375
            +E +T+VE E +P+  R RL  AQVNAAVV+I K  + ++  LS+PR K+S+  M  + E Q+Q+     G  F+ +SD++   + K  +   K+L+  LR LKRL+ VR  G ++ Y V+
Sbjct:  144 VEFITMVEFESIPKYIRGRLQYAQVNAAVVEINKTLQTKYNLLSRPRAKLSELNMKIVGECQRQENKETKGLHFVVDSDIKRWSSLKM-DTAGKSLLTMLRMLKRLREVRGPGNLVRYAVL 263
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BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Match: A0A0N7ZAT1_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0N7ZAT1_SCYOL)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-13
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:   16 LELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSKPRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFKKGEVTAKALIATLRSLKRLKVVRAAG-MMTYVVI 375
            +E +T+ E E VP+  R RL  AQVNAAVV+I K  E +++ LS+PR K+S+  M  + E Q+Q+     G  F+ + D++   + K  +   K+L+  LR LKRL+ VR  G ++ Y V+
Sbjct:  148 VEFITMKEFESVPKYIRGRLQYAQVNAAVVEINKTLETKYSLLSRPRAKLSELNMKIVGECQRQENKETKGLHFVVDGDIKRWSSLKM-DTAGKSLLTVLRMLKRLREVRGPGNLVRYAVL 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146303.3155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPM8_ECTSI1.800e-5277.42Similar to C18orf24 protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KVT8_9PHAE3.280e-4977.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPY4_9STRA9.720e-2138.71C18orf24 protein-like protein n=1 Tax=Tribonema mi... [more]
UPI001E1D16155.140e-1438.84spindle and kinetochore-associated protein 1-like ... [more]
A0A0N7ZAT1_SCYOL1.050e-1338.84Uncharacterized protein n=2 Tax=Scylla olivacea Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146303contigH-elongata_contig146303:555..1605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue4.7e-40
Seed eggNOG ortholog2880.D8LPM8
Preferred nameSKA1
GOsGO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000940,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0007049,GO:0007059,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0031110,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051301,GO:0051493,GO:0065007,GO:0070507,GO:0072686,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4832@1,KOG4832@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1395
Ec32 orthologEc-06_004800.1
Exons3
Model size384
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146303.3155.1prot_H-elongata_contig146303.3155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146303 555..1605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.8948498-CDS-H-elongata_contig146303:554..6531622929869.8948498-CDS-H-elongata_contig146303:554..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 555..653 -
1691679189.2407484-CDS-H-elongata_contig146303:554..6531691679189.2407484-CDS-H-elongata_contig146303:554..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 555..653 -
1622929869.923715-CDS-H-elongata_contig146303:1085..12391622929869.923715-CDS-H-elongata_contig146303:1085..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 1086..1239 -
1691679189.2572873-CDS-H-elongata_contig146303:1085..12391691679189.2572873-CDS-H-elongata_contig146303:1085..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 1086..1239 -
1622929869.943027-CDS-H-elongata_contig146303:1474..16051622929869.943027-CDS-H-elongata_contig146303:1474..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 1475..1605 -
1691679189.274045-CDS-H-elongata_contig146303:1474..16051691679189.274045-CDS-H-elongata_contig146303:1474..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146303 1475..1605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146303.3155.1

>prot_H-elongata_contig146303.3155.1 ID=prot_H-elongata_contig146303.3155.1|Name=mRNA_H-elongata_contig146303.3155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
PTVPVLELVTVVELEEVPRSTRARLTIAQVNAAVVDIQKATEQRHAFLSK
PRNKMSQKQMARLAELQKQQVPAHGGEPFIAESDLRVLPAFKKGEVTAKA
LIATLRSLKRLKVVRAAGMMTYVVIGK*
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mRNA from alignment at H-elongata_contig146303:555..1605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146303.3155.1 ID=mRNA_H-elongata_contig146303.3155.1|Name=mRNA_H-elongata_contig146303.3155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-elongata_contig146303:555..1605- (Himanthalia elongata Himel1 dioecious)
CCGACGGTTCCCGTTCTGGAGTTGGTCACAGTGGTGGAGCTGGAGGAAGT
CCCGCGGTCGACACGGGCGCGATTGACGATCGCGCAGGTTAATGCGGCGG
TCGTGGATATCCAGAAGGCGACAGAACAGAGGTATGCGTGACGAAACGCT
CTATGATTTTCCTCTTCGCCTCCGTGTATTTACGTGTTTGCGTTTTTCTT
GTCTGCACGCGCACTGCAGTTCGTTACCTAAGGCGCAGATCACAGATCTA
CATGGTGCTTTTTGCTAGATTCACCCTGACTTCTGCCATTGAGCCCGAAA
ACCTCCAGCAAAGCTATTAGTCCCTTCCAATTGAGCGTTGTACGCGCTCT
GACGTTCACCTGGCAGGCATGCGTTCCTATCCAAGCCGCGTAATAAAATG
TCGCAGAAGCAAATGGCGCGCTTGGCGGAGCTCCAGAAACAGCAAGTGCC
GGCGCACGGCGGGGAGCCTTTCATCGCAGAGTCTGACCTTCGAGTGCTTC
CGGCCTTCAAAAAGGGGGAGGTTAGTCCCACTCTACTTCATAGAACACTG
CCTGCGATGTTAGCCATTTCACTCGACTGGATTCGTATGGATAGCGGGGG
TGTTGAACAGAAAAAGGCACTGTGAACAGAGCAAGCATGCCGTGGTATAT
CCAAACTTTGATTCGCCAAACCGGTCGCTTCCCATCGGTGACCAACCGCT
TGACTGGATAACGCGTGTAAAGTGGCCAAACTATCCGCCTCCCTCATATA
TAAAGGGTGCATACAACATACATTGGTGGTCACAGTCGTTGGTCGCCGCT
TTCCCGCTATTGATGCCGACGATGGAGGAAGGCGGGTGTCTGGCCGTTCA
CTGCCCATTTAACTGTTCATGATGCGCCTACTTTACTCACCGACATGTTT
CCGCGCGCTTATTACCGTGATATTCGCTCGTACACCGGGCGAAATCTCGC
AGGTTACGGCCAAGGCGCTTATCGCTACCCTCCGAAGTCTAAAACGGCTC
AAAGTTGTGCGGGCGGCTGGCATGATGACATACGTGGTGATCGGGAAGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig146303:555..1605-

>mRNA_H-elongata_contig146303.3155.1 ID=mRNA_H-elongata_contig146303.3155.1|Name=mRNA_H-elongata_contig146303.3155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig146303:555..1605- (Himanthalia elongata Himel1 dioecious)
CCGACGGTTCCCGTTCTGGAGTTGGTCACAGTGGTGGAGCTGGAGGAAGT
CCCGCGGTCGACACGGGCGCGATTGACGATCGCGCAGGTTAATGCGGCGG
TCGTGGATATCCAGAAGGCGACAGAACAGAGCCGACGGTTCCCGTTCTGG
AGTTGGTCACAGTGGTGGAGCTGGAGGAAGTCCCGCGGTCGACACGGGCG
CGATTGACGATCGCGCAGGTTAATGCGGCGGTCGTGGATATCCAGAAGGC
GACAGAACAGAGGCATGCGTTCCTATCCAAGCCGCGTAATAAAATGTCGC
AGAAGCAAATGGCGCGCTTGGCGGAGCTCCAGAAACAGCAAGTGCCGGCG
CACGGCGGGGAGCCTTTCATCGCAGAGTCTGACCTTCGAGTGCTTCCGGC
CTTCAAAAAGGGGGAGGCATGCGTTCCTATCCAAGCCGCGTAATAAAATG
TCGCAGAAGCAAATGGCGCGCTTGGCGGAGCTCCAGAAACAGCAAGTGCC
GGCGCACGGCGGGGAGCCTTTCATCGCAGAGTCTGACCTTCGAGTGCTTC
CGGCCTTCAAAAAGGGGGAGGTTACGGCCAAGGCGCTTATCGCTACCCTC
CGAAGTCTAAAACGGCTCAAAGTTGTGCGGGCGGCTGGCATGATGACATA
CGTGGTGATCGGGAAGTGAGTTACGGCCAAGGCGCTTATCGCTACCCTCC
GAAGTCTAAAACGGCTCAAAGTTGTGCGGGCGGCTGGCATGATGACATAC
GTGGTGATCGGGAAGTGA
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