prot_H-elongata_contig14623.3150.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14623.3150.1
Unique Name	prot_H-elongata_contig14623.3150.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	259

Homology

[Close]

BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Match: A0A6H5K4D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.110e-24
Identity = 93/238 (39.08%), Postives = 119/238 (50.00%), Query Frame = 0

Query:    1 MEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCTQRDRLTSQYERSDVEFTGPD------VEEDAGQEATETVGMPLXXXXXXXXPTSFRPPPA----RRASVVNPIFAGSGSRIKQK----WHKSSGDPIGPTCDNRTSLTSNDSDMSPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTAN-GARGRRVEWGATGGGPLVAHPSTQAAYSGAAAWVR 223
            +EQ+AWV +   H ACYEVFDA+  ++  + V+A ++VVA+   YA LC QRDRL S++        GPD      VEED G EA  T  M L        P   +P PA     R+ VVNP+FAG GSR+K+       K SG  +G   + RTSL S ++DMS  ED EA W      P +    NS  G   +  S+A+ G       W   GGG             GAAAWVR
Sbjct:   92 VEQVAWVSADSQHEACYEVFDAEGLNNAISAVVASLVVVALAFAYAALCVQRDRLLSRFGFG----PGPDPARQDDVEEDLGDEAAVTRVMTL--------PPMTQPVPAPLTSERSYVVNPVFAGKGSRMKRNPLPHGMKRSGSSVGGG-ERRTSLASMETDMSSGEDHEAGW------PLDGDVGNSGAGSKHSRGSSADVGMSNHLSSWAGYGGG-------------GAAAWVR 297

[Close]

BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Match: D7G228_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G228_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 6.690e-24
Identity = 95/239 (39.75%), Postives = 120/239 (50.21%), Query Frame = 0

Query:    1 MEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCTQRDRLTSQYERSDVEFTGPD------VEEDAGQEATETVGMPLXXXXXXXXPTSFRPPPARRAS----VVNPIFAGSGSRIKQK----WHKSSGDPIGPTCDNRTSLTSNDSDMSPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTANGARGRRVEWGATGGGPLVAHPSTQAAYSG--AAAWVR 223
            +EQ+AWV +   H ACYEVFDA+  ++  + V+A ++VVA+   YA LC QRDRL S++        GPD      VEED G EA  T  M L        P   +P PA  AS    VVNP+FAG GSR+K+       K SG   G   + RTSL S ++DMS  ED EA W      P +    NS             GA G R   G++    +  H S+ A Y G  AAAWVR
Sbjct:  200 VEQVAWVSADSEHEACYEVFDAEGLNNALSAVVASLVVVALAFAYAALCVQRDRLLSRFGFG----PGPDRARQDDVEEDLGDEAAVTRVMTL--------PPMTQPVPAPLASERSYVVNPVFAGKGSRMKRNPLPHGVKRSGS-SGGGGERRTSLASMETDMSSGEDHEAGW------PLDGDVKNS-------------GAAGSRHSRGSSADAGMPNHLSSWAGYGGGGAAAWVR 406

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K4D6_9PHAE	1.110e-24	39.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G228_ECTSI	6.690e-24	39.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 49..258
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 28..48
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..27
None	No IPR available	TMHMM	TMhelix		coord: 27..49

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14623	contig	H-elongata_contig14623:1090..2303 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14623.3150.1	mRNA_H-elongata_contig14623.3150.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14623 531..4523 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14623.3150.1 ID=prot_H-elongata_contig14623.3150.1|Name=mRNA_H-elongata_contig14623.3150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCT
QRDRLTSQYERSDVEFTGPDVEEDAGQEATETVGMPLPLPLPPPLPTSFR
PPPARRASVVNPIFAGSGSRIKQKWHKSSGDPIGPTCDNRTSLTSNDSDM
SPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTANGARGRRVEWGAT
GGGPLVAHPSTQAAYSGAAAWVRPSNSDATPTARGQRGVLRRPPSRSLST
SSNSRWPG*