mRNA_H-elongata_contig146207.3148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146207.3148.1
Unique NamemRNA_H-elongata_contig146207.3148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146207.3148.1 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 6.570e-57
Identity = 122/259 (47.10%), Postives = 154/259 (59.46%), Query Frame = 1 
Query:    1 DSKSSKTVRFEAQPITAIWLAHSSKEYDRRSIVVDLSKTPFALFRKDAVLMKGAAA---PCTPLRRPSPAAVD-----------------------VSYQTQIPEVRSKSQFPSSLPKEI--TKLSRLEDSDASDSSIGHTDNETDLDPSD---------------SDSSPRSIRMLGLRMGISET--KPAFFGVWKRTSSEGYEKFLLSSGVPKKAAATALRNHPVHIIDHDSAYFRLIVKNGLSKVDNTFFIGDEPR 642
            D+   +TVRF  QPI+AIW+A S  +Y+RRSIVVDLSKTPFALFR+DAV+MK A     P  PL  P P A+                        V       +  +    PS+  +     +L++L +S++S+SS GHTD ETD   +D                ++ P  +    LR G +     PAF+GVWKRTSSEGYE+ LLSSGVPK+A A A++ HPVHIIDHD +YFRLIVKNGLSKVDNTFFIGDEP+
Sbjct:   69 DASPRRTVRFPHQPISAIWVADSVLDYNRRSIVVDLSKTPFALFRRDAVMMKQARTSVDPSAPLPPPGPPALSPPRLRAAAAACXXXXXXXXXRSPVGSSDAAADSDASPSPPSAERRRPGGDRLAKLWESESSESSEGHTDLETDDTETDWHSDADDCCSVGSGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPK 327
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BLAST of mRNA_H-elongata_contig146207.3148.1 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.050e-25
Identity = 80/208 (38.46%), Postives = 108/208 (51.92%), Query Frame = 1 
Query:   19 TVRFEAQPITAIWLAHSSKEYDRRSIVVDLSKTPFALFRKDAVLMKGAAAPCTPLRRPSPAAVDVSYQTQIPEVRSKSQFPSSLPKEITKLSRLEDSDASDSSIGHTDNETDLDPSDSDSSPRSIRMLGLRMGISETKPAFFGVWKRTSSEGYEKFLLSSGVPKKAAATALRNHPVHIIDHDSAYFRLIVKNGLSKVDNTFFIGDEPR 642
            +V F   P   + L ++  +YDRRSI VDL++TP+ALF KD  LM           RP+       Y    P+   K    SSL  +  +L    +  +SD            D + ++   R  RM+ L    +  +P F G+WKR+  EG+ + L  SGVP+KAA  A +  PVHIIDHD  YFRLI+KNGL K D  + IGDEPR
Sbjct:   98 SVHFAEDP--TVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMN----------RPA------EYS---PKHTGKEGRSSSLSDDEEELHTEGEGSSSD------------DEARAEEVVRQKRMISLERRRA-LRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPR 271
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BLAST of mRNA_H-elongata_contig146207.3148.1 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-15
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  406 LRMGISETKPAFFGVWKRTSSEGYEKFLLSSGVPKKAAATALRNHPVHIIDHDSAYFRLIVKNGLSKVDNTFFI 627
            LR   +  +P F GVWKR   EG+ + L  SGVP+KAA +A +   VHIIDHD  YFRLIVKNGL+KVD  + I
Sbjct:  119 LRRRAAAARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHYII 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146207.3148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G864_ECTSI6.570e-5747.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHH8_9STRA1.050e-2538.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN9_9STRA1.070e-1555.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146207contigH-elongata_contig146207:915..1556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.390335-CDS-H-elongata_contig146207:914..15561622929869.390335-CDS-H-elongata_contig146207:914..1556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146207 915..1556 +
1691679189.0455503-CDS-H-elongata_contig146207:914..15561691679189.0455503-CDS-H-elongata_contig146207:914..1556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146207 915..1556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146207.3148.1prot_H-elongata_contig146207.3148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146207 915..1556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146207.3148.1

>prot_H-elongata_contig146207.3148.1 ID=prot_H-elongata_contig146207.3148.1|Name=mRNA_H-elongata_contig146207.3148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
DSKSSKTVRFEAQPITAIWLAHSSKEYDRRSIVVDLSKTPFALFRKDAVL
MKGAAAPCTPLRRPSPAAVDVSYQTQIPEVRSKSQFPSSLPKEITKLSRL
EDSDASDSSIGHTDNETDLDPSDSDSSPRSIRMLGLRMGISETKPAFFGV
WKRTSSEGYEKFLLSSGVPKKAAATALRNHPVHIIDHDSAYFRLIVKNGL
SKVDNTFFIGDEPR
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mRNA from alignment at H-elongata_contig146207:915..1556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146207.3148.1 ID=mRNA_H-elongata_contig146207.3148.1|Name=mRNA_H-elongata_contig146207.3148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=642bp|location=Sequence derived from alignment at H-elongata_contig146207:915..1556+ (Himanthalia elongata Himel1 dioecious)
GACTCGAAGTCTTCCAAGACGGTGAGATTCGAGGCTCAGCCCATCACTGC
GATATGGCTAGCTCACTCCTCGAAGGAGTACGATCGAAGAAGCATCGTGG
TGGATTTGAGCAAAACACCGTTTGCTCTTTTCCGCAAGGACGCCGTGTTG
ATGAAAGGAGCTGCCGCCCCGTGTACCCCTCTTCGGAGGCCGTCACCGGC
AGCGGTCGACGTTAGCTACCAAACTCAGATCCCAGAAGTTCGTTCAAAAT
CACAGTTCCCTTCCTCTCTTCCCAAAGAAATAACAAAGTTATCGAGGTTG
GAGGATTCGGACGCGTCGGACAGCTCGATTGGTCACACGGACAATGAGAC
CGACCTCGACCCATCTGACTCAGACTCGAGTCCCCGGTCAATCAGGATGC
TGGGGCTAAGAATGGGCATATCCGAGACGAAGCCCGCGTTTTTTGGAGTG
TGGAAGCGGACGAGCTCTGAAGGCTACGAAAAGTTCTTGCTATCCTCCGG
AGTACCCAAGAAAGCCGCCGCGACTGCTCTTCGCAATCACCCGGTCCACA
TCATCGATCACGACTCGGCGTACTTCCGACTGATTGTGAAGAATGGTCTA
TCCAAGGTGGACAACACGTTTTTCATCGGCGACGAGCCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig146207:915..1556+

>mRNA_H-elongata_contig146207.3148.1 ID=mRNA_H-elongata_contig146207.3148.1|Name=mRNA_H-elongata_contig146207.3148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig146207:915..1556+ (Himanthalia elongata Himel1 dioecious)
GACTCGAAGTCTTCCAAGACGGTGAGATTCGAGGCTCAGCCCATCACTGC
GATATGGCTAGCTCACTCCTCGAAGGAGTACGATCGAAGAAGCATCGTGG
TGGATTTGAGCAAAACACCGTTTGCTCTTTTCCGCAAGGACGCCGTGTTG
ATGAAAGGAGCTGCCGCCCCGTGTACCCCTCTTCGGAGGCCGTCACCGGC
AGCGGTCGACGTTAGCTACCAAACTCAGATCCCAGAAGTTCGTTCAAAAT
CACAGTTCCCTTCCTCTCTTCCCAAAGAAATAACAAAGTTATCGAGGTTG
GAGGATTCGGACGCGTCGGACAGCTCGATTGGTCACACGGACAATGAGAC
CGACCTCGACCCATCTGACTCAGACTCGAGTCCCCGGTCAATCAGGATGC
TGGGGCTAAGAATGGGCATATCCGAGACGAAGCCCGCGTTTTTTGGAGTG
TGGAAGCGGACGAGCTCTGAAGGCTACGAAAAGTTCTTGCTATCCTCCGG
AGTACCCAAGAAAGCCGCCGCGACTGCTCTTCGCAATCACCCGGTCCACA
TCATCGATCACGACTCGGCGTACTTCCGACTGATTGTGAAGAATGGTCTA
TCCAAGGTGGACAACACGTTTTTCATCGGCGACGAGCCAAGGGACTCGAA
GTCTTCCAAGACGGTGAGATTCGAGGCTCAGCCCATCACTGCGATATGGC
TAGCTCACTCCTCGAAGGAGTACGATCGAAGAAGCATCGTGGTGGATTTG
AGCAAAACACCGTTTGCTCTTTTCCGCAAGGACGCCGTGTTGATGAAAGG
AGCTGCCGCCCCGTGTACCCCTCTTCGGAGGCCGTCACCGGCAGCGGTCG
ACGTTAGCTACCAAACTCAGATCCCAGAAGTTCGTTCAAAATCACAGTTC
CCTTCCTCTCTTCCCAAAGAAATAACAAAGTTATCGAGGTTGGAGGATTC
GGACGCGTCGGACAGCTCGATTGGTCACACGGACAATGAGACCGACCTCG
ACCCATCTGACTCAGACTCGAGTCCCCGGTCAATCAGGATGCTGGGGCTA
AGAATGGGCATATCCGAGACGAAGCCCGCGTTTTTTGGAGTGTGGAAGCG
GACGAGCTCTGAAGGCTACGAAAAGTTCTTGCTATCCTCCGGAGTACCCA
AGAAAGCCGCCGCGACTGCTCTTCGCAATCACCCGGTCCACATCATCGAT
CACGACTCGGCGTACTTCCGACTGATTGTGAAGAATGGTCTATCCAAGGT
GGACAACACGTTTTTCATCGGCGACGAGCCAAGG
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