prot_H-elongata_contig14617.3146.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14617.3146.1
Unique Nameprot_H-elongata_contig14617.3146.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length267
Homology
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 8.970e-125
Identity = 185/255 (72.55%), Postives = 213/255 (83.53%), Query Frame = 0
Query:    1 NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFD----YAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 251
            N I +++TG YYL S+IHIRNGATLEIDG   G+  C TLL+A +  ITG+DSLNIRAHGGNLV+RDTKIFSWDI  GTYDTN  +GR Y+SAITEFITGR+ DLC  D   G DGYSTG+AK+ MGVARMDIYDSEL YLG+  SESYGI YKARGLCKTL NVDIFDDDQDF     YAVYGDI  S++H+N+FGHYSYGHQGG+W +N V+DN+GYGFDPHDDSDHL I+GN+V+ NG+HGIIASKRCTD+T
Sbjct:   82 NVISETYTGVYYLDSNIHIRNGATLEIDGT--GALACETLLMAGNDDITGSDSLNIRAHGGNLVVRDTKIFSWDITTGTYDTNTGNGRPYLSAITEFITGRDEDLCPSDTQAGEDGYSTGQAKEQMGVARMDIYDSELAYLGYSESESYGISYKARGLCKTLENVDIFDDDQDFPVYGAYAVYGDIYRSKIHNNWFGHYSYGHQGGKWIDNDVYDNVGYGFDPHDDSDHLEIRGNKVWGNGYHGIIASKRCTDIT 334          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JYM5_9PHAE (MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM5_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.800e-92
Identity = 147/238 (61.76%), Postives = 172/238 (72.27%), Query Frame = 0
Query:    5 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGII 242
            D++TGTYYL S + I NGATL IDG       C TLLLAS+S+        I AHGGNL IR TKIFSWD++   YDT+  DGR+Y+SA+TE ITGR  D C DD        S G+AK+DMG A MDI+ SE+GYLG+  SE+YGI YKARGLCK  +N+DIFDDD   +  V GDI +S+LHHN+FGHYS+GH GG+W  N VHDN GYGFDPHDDSD L I GNEVYNNGWHGII
Sbjct:   96 DTYTGTYYLESDVFITNGATLSIDGSESEENECETLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLKNEDYDTDPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKEDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDNSNLDIFDDDNGLNVGVTGDIYDSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLKIVGNEVYNNGWHGII 324          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FWK3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK3_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.930e-91
Identity = 146/237 (61.60%), Postives = 168/237 (70.89%), Query Frame = 0
Query:    5 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGI 241
            D++TGTYYL S + I NGATL IDG       C +LLLAS+S+        I AHGGNL IR TKIFSWD+E   YDT   DGR+Y+SA+TE ITGR  D C DD        S G+AK DMG A MDI+ SE+GYLG+  SE+YGI YKARGLCK  +N+DIFDDD   +  V GDI  S+LHHN+FGHYS+GH GG+W  N VHDN GYGFDPHDDSD L I GNEVYNNGWHGI
Sbjct:  129 DTYTGTYYLESDVFITNGATLSIDGSESEKNECESLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLENEDYDTEPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKKDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDHSNLDIFDDDNGLNVGVTGDIYRSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLRIIGNEVYNNGWHGI 356          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.750e-69
Identity = 120/246 (48.78%), Postives = 157/246 (63.82%), Query Frame = 0
Query:    6 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 251
            S TGT+ LT  +++ +G TLE+ G   G       LL+++ T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISAI+E IT  E + C             G AK+ MG ARMDI  SE+GYLG++ SESYG+ +K RG C+  +N ++FDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   98 SATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.750e-69
Identity = 120/249 (48.19%), Postives = 159/249 (63.86%), Query Frame = 0
Query:    3 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 251
            I DS TGT+ LT  + + +G TL++ G   G       LL++  T      +N+RAHGG+L    TK+F+WD      D + +DGR+Y+SA++E IT  +   CN            G AK++MG ARMDI DSE+GYLG++ SESYG+ +K RG C   +N D+F+D       VYG+I +S++HHN FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVY+NG+HGIIASKRC  V+
Sbjct:   92 ISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTF-----INLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITD-DSQTCN------------GRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFED-----VNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVS 317          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.550e-67
Identity = 119/246 (48.37%), Postives = 157/246 (63.82%), Query Frame = 0
Query:    6 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 251
            S TGT+ LT  +++ +G TL++ G   G       LL+++ T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISAI+E IT  E + C             G AK+ MG ARMDI  SE+GYLG++ SESYG+ +K RG C+  +N ++FDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   98 SATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 2.740e-67
Identity = 117/243 (48.15%), Postives = 152/243 (62.55%), Query Frame = 0
Query:    8 TGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDV 250
            TG + LT+ + +  GATL   G+ +G G C  L + S S   G+D   IR HGGNL   DT + SWD++         DGR++I  ++E +TG +    N+                 MG  RMDI DSE+GYLG+ ASE+YGI +K RG C  L+N D+FDD       VYGD+  S++HH Y+G YS+GHQGG WTNN++HDN  YGFDPHDDSD+L+I GN+VYNN  HGIIASKRC +V
Sbjct:   50 TGKWLLTADLFVTGGATLYCRGKGVG-GNCAELRIRSTS---GSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAINN-----------------MGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDD-----VNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNV 266          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.180e-66
Identity = 118/249 (47.39%), Postives = 158/249 (63.45%), Query Frame = 0
Query:    3 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 251
            + ++ TGT+ LT  +++ +G TL++ G   G       LL++  T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISA++E +T  E + C             G AK+ MG ARMDI +SE+GYLG+  SESYG+ +K RG CK  +N +IFDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   99 VSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETY-----INLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTD-EDETCE------------GNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDD-----VNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 324          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.050e-65
Identity = 119/231 (51.52%), Postives = 152/231 (65.80%), Query Frame = 0
Query:    3 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEV 233
            I D+ TG++YL S ++I  G+ L + G   G G C  LLLAS         +N+RAHGG L++  T + SWD+ AGT D N +DGR+Y+SAI+E IT    + C+            G AK+DMG ARMDI DSE+ +LGWY SESYGI YK RG CK L+N ++FD       +V GDI  S++H NYFGHYSYGHQGG W++N +H NIGYGFDPHDDSD++ I  NEV
Sbjct:  111 ISDTVTGSWYLESTLYITEGSRLVVQGLSKG-GDCDHLLLASSPE----KFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITD-PAETCD------------GTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDS-----VSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEV 318          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 220 bits (561), Expect = 2.980e-65
Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 0
Query:    3 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRC 247
            +  S TGT+ LT  +++ +G TL++ G+  G G    L L S    T  D +N+RAHGG+L    TK+F+WD       T+   GR+YISA++E IT         D  +  DG     AK +MG ARMDI DSE+ YLG++ SESYG+ +K RGLC+ L+N+++FD        VYG+I +S++HHNYFG Y+YGH+ G W  N +H N  YGFDPHDDSD L I  NEVYNNG HGIIASKRC
Sbjct:   92 VSSSITGTWLLTESLYVEDGITLQVHGKSAG-GKADELRLLS----TSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVIT---------DSKQKCDG----RAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDA-----VNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRC 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS5_9PHAE8.970e-12572.55MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JYM5_9PHAE1.800e-9261.76MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWK3_ECTSI1.930e-9161.60Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.750e-6948.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE5.750e-6948.19Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
D7G339_ECTSI1.550e-6748.37Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI2.740e-6748.15Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI5.180e-6647.39Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FZF8_ECTSI2.050e-6551.52Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA2.980e-6548.57Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 178..264
e-value: 9.9E-10
score: 38.5
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 9..262

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14617contigH-elongata_contig14617:1704..4592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14617.3146.1mRNA_H-elongata_contig14617.3146.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14617 1704..4592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14617.3146.1 ID=prot_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITG
TDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITG
REVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYG
IVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQ
GGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDV
TIKKNKVWNNGRNGKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039448Beta_helix
IPR011050Pectin_lyase_fold/virulence