mRNA_H-elongata_contig146128.3145.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: D7G3L7_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI) HSP 1 Score: 241 bits (614), Expect = 7.490e-76 Identity = 120/188 (63.83%), Postives = 140/188 (74.47%), Query Frame = 1
Query: 1 IPWPKVYNNIIENCGVNDFVRYPNDGG-KNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGSSPEVVGS 561
+ + +VYNN I NCG +DFV DGG KNGEG+YLGTSSNQWDDG NP+ EPDES +NH F NHFDT+ GNEG+DIKEGS NIVEDNYCTGQKDPNSAC DARG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NND G+ + + PQGA+C N I GS + GS
Sbjct: 177 VTYSQVYNNRITNCGTHDFVM---DGGSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ---------GNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGS 352
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE) HSP 1 Score: 235 bits (600), Expect = 7.220e-70 Identity = 115/187 (61.50%), Postives = 137/187 (73.26%), Query Frame = 1
Query: 1 IPWPKVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGSSPEVVGS 561
+ + +VYNN I NCG +D+V N KNGEG+YLGTSSNQWDDG NP+ EPDES +NH F NHFDT+ GNEG+DIKEG+ NIVEDNYCTGQKDPNSAC DARG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NN G+ + + PQGA+C N I GS + GS
Sbjct: 481 VTYSQVYNNRITNCGTHDYVM--NGSSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ---------GNEGIDIKEGARYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNGYAGIKITMSPQGAVCSNDILGSKYDSRGS 656
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 178 bits (451), Expect = 1.750e-51 Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQN 525
++++N NCGV DF N+GGKNGE +Y+GTSSNQWDDG NPT PD S N I N F T +GNE VDIKEG+ N+VE N C+GQ+DPNSA FD+RG NIFRYN + +N GA +R GG+T+DG YGV+N+ Y NL+ NN + GV +M PQ +C N
Sbjct: 184 EIFDNTFYNCGVYDFKF--NNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLT---------NGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGN 343
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A1F7IR59_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12 TaxID=1802061 RepID=A0A1F7IR59_9BACT) HSP 1 Score: 164 bits (415), Expect = 6.180e-47 Identity = 90/176 (51.14%), Postives = 114/176 (64.77%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGS 540
++ N I +CG +D+ +DGGKNGEG+Y+GT+ Q DDG NPT++ DES N I N FDT+ GNE VDIKE S NIVE+N CTGQKDP S D+RG NIFRYN N GA IR GG T+D + NE YEN++VNN KGG+ +M PQG +C N ++G+
Sbjct: 111 EIAYNTITSCGRHDYKF--DDGGKNGEGVYIGTAPEQRDDGKNPTNDNDESNGNWIHHNFFDTQ---------GNECVDIKENSKYNIVENNECTGQKDPESGGLDSRGGYNIFRYNNIYGNSGAGIRLGGDTVD---ENIMNEVYENIIVNNKKGGIKIMTAPQGKMCDNIMSGN 272
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: UPI001998BEE9 (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI001998BEE9) HSP 1 Score: 166 bits (419), Expect = 9.910e-47 Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSIN 534
++ + NCGV DF R+ GGKNGE +Y+GT+ Q DG NPT++PD+S N I N+F+T+ GNE VDIKE ++NNIVE+N CTGQKDPNSA FD+RGS NIFRYNT+ N+GA +R GG T T G+DN+ Y N++ +ND GG+ PQ IC N+IN
Sbjct: 166 EIAQSTFLNCGVRDF-RFKA-GGKNGEAIYIGTAPEQRGDGKNPTTDPDQSNNNWIHHNNFNTQ---------GNECVDIKEAATNNIVENNTCTGQKDPNSAGFDSRGSGNIFRYNTSYGNVGAGVRLGGDTA---TDGIDNQVYANILHHNDAGGIKFQRAPQRTICGNTIN 325
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT) HSP 1 Score: 169 bits (427), Expect = 2.050e-46 Identity = 84/177 (47.46%), Postives = 117/177 (66.10%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGSS 543
++ N I NCG DF+ N GGKNGEG+Y+GTS+ QW DG NPT++PDE++ N + N+ DT+ GNE +DIKEG++ NI+E N C GQKD S FD+RG NIFRYN ++G IR GG +++G YG +N+ YEN +V+N GG+ PQG IC N+++G++
Sbjct: 21 EIAYNTIANCGAYDFLF--NAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQ---------GNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTMSGNT 186
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 163 bits (412), Expect = 1.430e-45 Identity = 86/178 (48.31%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDG-GKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGSS 543
+++ N NCG DF DG GKNGE +Y+GTSS QWDDG NP+++PD S +N + N+F T GNE VDIKEG+++N+VE+N C GQ+DP S FDARG NI RYN + +N GA IR GG+ ++G YGV NE Y N + +ND G+ +M PQ +C NS+ +S
Sbjct: 190 EIFGNTFYNCGAYDFQF---DGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTR---------GNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTDNS 355
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A1Y0IFB0_9GAMM (Secreted protein n=2 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0IFB0_9GAMM) HSP 1 Score: 159 bits (401), Expect = 1.010e-43 Identity = 86/179 (48.04%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 13 KVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSI--NGSS 543
+++ N+I NCGV DF GGKNGEG+Y+GT+ QWD+G NP+++PD S N ++ N F T GNE VDIKEG+ N++E N C Q DPNS FDARG +NIFRYN A N GA +R GG G YG++N+ Y N++ N GV VM PQ IC N + NG S
Sbjct: 206 EIFGNLIRNCGVYDFQFAA--GGKNGEGIYIGTAPEQWDNGKNPSADPDHSNGNWVWGNKFYTY---------GNECVDIKEGAEYNLIEYNACQNQLDPNSGGFDARGDNNIFRYNIAHTNTGAGVRLGGDLHQGRQYGINNQVYGNIIYGNGHAGVKVMSYPQDQICSNMLFDNGRS 373
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.010e-42 Identity = 86/173 (49.71%), Postives = 107/173 (61.85%), Query Frame = 1
Query: 16 VYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNP--TSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNS 528
+ NN IENCG+ DF R+ DG K GE +Y+GTSSNQW+DG T+ PD S +N + N GNE VDIKEG++ N+VE N C Q+D S C+D+RG+ N FRYNTA +GA IR GGHTIDG+ YGVDN Y N + + G + V PQG IC NS
Sbjct: 42 IQNNDIENCGIYDF-RFQFDG-KIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPR---------GNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNS 203
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.690e-42 Identity = 84/176 (47.73%), Postives = 108/176 (61.36%), Query Frame = 1
Query: 16 VYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFINHFDTEARIAQSSSDGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACFDARGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMVNNDKGGVSVMVGPQGAICQNSINGSS 543
+ +N+I++CGV DFV Y N G KNGEG+Y+GTSS QW DG PDE N I N + +GNE VDIKEGS+ IVE+N C+GQ D +S CF +RG N+FRYNTA + +G +R GG +DG+ YG DN YEN + GG+S PQG +C NS G +
Sbjct: 156 ISDNVIQDCGVRDFV-YGNSG-KNGEGIYVGTSSTQWSDG------PDECNDNTITGNTI---------TPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGGA 314 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146128.3145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146128.3145.1 >prot_H-elongata_contig146128.3145.1 ID=prot_H-elongata_contig146128.3145.1|Name=mRNA_H-elongata_contig146128.3145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp IPWPKVYNNIIENCGVNDFVRYPNDGGKNGEGLYLGTSSNQWDDGNNPTSback to top mRNA from alignment at H-elongata_contig146128:8..1579- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146128.3145.1 ID=mRNA_H-elongata_contig146128.3145.1|Name=mRNA_H-elongata_contig146128.3145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1572bp|location=Sequence derived from alignment at H-elongata_contig146128:8..1579- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146128:8..1579- >mRNA_H-elongata_contig146128.3145.1 ID=mRNA_H-elongata_contig146128.3145.1|Name=mRNA_H-elongata_contig146128.3145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig146128:8..1579- (Himanthalia elongata Himel1 dioecious)back to top |