mRNA_H-elongata_contig1461.3144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1461.3144.1
Unique NamemRNA_H-elongata_contig1461.3144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 5.650e-141
Identity = 224/410 (54.63%), Postives = 295/410 (71.95%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHR-EAGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIEDNDTLVRFKR 1227
            P CAVCS  Y    G+ C+KCS+  G IAL V++++ G+   VA+ SY +SG+ E   +G V    R +PLQ++KI++V WQILTQFTSVAN+ +P +YQ FLD+++  NFD+ WVLSAGC+ ++DFHDRLL++T+ PI  ++ L   YA A   +  S   L+ V HKHVS+ LL+TFLVY+SVS+V+FQ FAC++LDD ++YLRADY IECD PKH    VYAG MI +Y VGI ALY   LF + DV  R EA RE+  R   T+DLW PY+PS +YYE+IECARR+LLAGVVVFI+PNTAAQIA+ L++A+ F  +SE LAPY SRWD W+ R+GHAV+ +SMY+ALLLKV+VSDE  +SQ  FE++LV+ HV MV   L+E I+ A  L VE+         F+R
Sbjct:  564 PYCAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQQPASSSFRR 973          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 455 bits (1170), Expect = 1.790e-139
Identity = 229/414 (55.31%), Postives = 300/414 (72.46%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVF--HREAGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIEDN----DTLVRFK 1224
            P CA+CSE Y       C  CS+  GGIALA A+ + G+  +VAV SY+ SG+    G+G V  + R +PLQ++KI+VV WQI+TQFT+VANVTYP +YQNFL+ ++  NFD+SW+LSAGC++++DFHDRLL+ T+GPI A ++L  TYA A+  +  +   L NVRHKHV M LL+TF VYSSVS+ +F+ FAC+ L+D ++YL ADY IECD  KHK   VYAG M+ +Y  GI ALY+ LLF +RDV      AG++   RA +TSDLW PYKPS +YYE++ECARR+LLAGVVVFI+PN++AQIAITLI+A  F+ +SEGLAPY SRWD WI+R+GH V+  SMYLALLLKV+VS E  +SQ  FE +LV  HV MV+  + E +++A  LR E+  D     D L RF+
Sbjct: 1198 PYCAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQHLQEDRLPRFR 1611          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 6.500e-139
Identity = 225/398 (56.53%), Postives = 282/398 (70.85%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHREA-GREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQ 1191
            P CA+CS+ Y    G  C+KC    GGI LA A+ + G+FTVVAV SY+        G     ++ R LPLQT+KI+VV WQI+TQFTS ANVTYPD+YQ FL+ +D  NFDISWVLSAGC+++LDFHDRLLL+T+GPI A++ L  TY      N  +   L+ V  +HVSM LL+ FLVYS VSSVVFQ FACD L+    YLRADY IECD  KH+   VYAG MI +YPVGI A Y  LL  +RDV  ++  GRE+  R  + S+LW PY+PS YYYE+IEC RRILL G+VVFI+PNTAAQIAITLI+ + F  +SE L PY   WD W+SR+ HAV+FMS+Y+ALLLKV+VS+E  +SQ  FE +LV+ H  M+LA +VE IL+ C  RV++
Sbjct:  604 PYCAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRVKE 1001          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 1.140e-136
Identity = 225/396 (56.82%), Postives = 290/396 (73.23%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHRE-AGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRV 1185
            P C++CS+ Y       C++CS++ GGI LA  + +  +   VAV SY++S  +    +G V  + R +PLQ+ KI+VV WQILTQFT+VANVTYPD+YQ FLD +   NFD+SWVLSAGCI+ +DFHDRLL++T+GPI A++ LC TYA A   N  +   L+ + ++HVSM LL+T  VYSSVSS +FQ FAC+ L D  +YLRADY I CD  KHK L VYAGVM+ VY VGI ALY  LLF +RDV  R  A REE+ R  +TS+LW PYKPS +YYE+IEC RR+LLAGVVVFI+PNTA QIAITL++A  F+ VSEGLAPY SRWD W+SR+GHAV+F+SMY+ALLLKV+VS+E   SQ  FE +LV+ H  M+L  ++E +++ C L V
Sbjct: 1654 PYCSICSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTV 2049          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 1.570e-136
Identity = 232/412 (56.31%), Postives = 305/412 (74.03%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSE-APGGIALAVAITIFGIFTVVAVFSYLLSGD--MERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHRE-AGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIEDNDTLVRFK 1224
            P C +CS+ Y E     C+KCSE + GGIA+AV + +  +F  VAV SY+ SG+  M R G G V  + R +PLQ++KI++V WQILTQFTSVANVTYPD+YQ+ LD +D  NFD+SW+LSAGC+++++FH RLL++T+ PI A+++L  TYA A   N      L  + +KHV++ LL+TF VYSSVSS +F+ FACDDLD ++ YLRADYSIEC+  +H+ + VYAG MI +Y VGI ALYA LLF +RDV   E   REE  R K+ S+LW PYKP+ +YYE+IEC RR+LLAGVVVFI+PNTAAQIA+TL++A  F  +SEGLAPY SRWD WISR+GH V+F+SMY+ALLLKV+VSDE  +SQ  FE++LV++HV M+L  LVEA + A  LR E+   +    RF+
Sbjct: 1097 PYCGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKG-GIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREERRSLSAASPRFR 1507          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 1.950e-136
Identity = 220/407 (54.05%), Postives = 291/407 (71.50%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFH-REAGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIEDNDTLVR 1218
            P CAVCS+ Y       C +CS   G IALA  + +  +    AV SY +SG +     G V  + + +PLQ++KI++V WQILTQFTSVANVTYPD+Y+ FLD +D  NFD+SWVLSAGCI ++DFHDRLL +T+ P+  ++ L GTYA A+  N     +L+ + +KHVS+ LL+TFL+YSSVS+ +F+ F C++L+D  +YLRADY+I+CD  KHK   VYAG M+ VY VGI ALYA LLF +R V     A RE++ R  +TSDLW PYKPS +YYE+IEC RR+LLAGVVVFIFPNTAAQIAITL++A  F+ VSEGLAP+ S+WDAW++R GH V+F+SMY+ALLLKV+VS E   SQ  +E +LV+ H  M+LA + E  ++   L+VEQ ++  T  R
Sbjct:  843 PYCAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVEQRQEPTTRFR 1249          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 4.320e-132
Identity = 217/389 (55.78%), Postives = 288/389 (74.04%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHRE-AG-REESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAI 1161
            P C+VCSE Y  +    C +C +  GGIA+ V + +F +   +A+  +L+SG+ME   +G ++ + +RLPLQ+IKI+VVVWQILTQF+SVANVTYPD+YQ FLD V+ LNFD+ W+ SAGC++E+DFH RLL+ T+GP+ A+ +L  TY VA  R+  SE AL+ +RHKH+SM LL+TFLVYSSVS+ VFQ FAC+DLDD++ YLRADY IECD  +H+   V+AG+MI VYPVGI   Y +LL+ +R V   E AG R+ S + +  SDLW PYKP R+YYE+IEC RR+ L GVVVFI+PNTAAQ+A+TL++A  F+  S  LAPY S+WDA IS +GH ++F SMY ALL KV+VSDE  +SQ  F  +LV+ H  MV+A +VE I
Sbjct: 1362 PYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDFHGRLLVATIGPLVALALLAITYTVAKRRSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIPLFYGYLLYKHRRVLKSEDAGKRQTSPQVQPISDLWFPYKPGRFYYEVIECVRRMSLTGVVVFIYPNTAAQVAVTLMIAFSFVVTSVVLAPYVSKWDASISLVGHVIVFTSMYTALLSKVDVSDERADSQEVFAGVLVAAHACMVVAVVVETI 1750          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 2.440e-128
Identity = 201/391 (51.41%), Postives = 281/391 (71.87%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHRE-AGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMA 1170
            P C++CS+ Y    G +C+KC    GGI  AV + +  +F  V V  Y++SG+        +  +   +PLQ++KI++V WQILTQF S ANV YP +YQ FLD +    FD+ W++SAGC++++ FH RLL  T+GPI A+++L GTYA A   N  +   LR +  KHV + LL+TFLVYSSVSS +F+ FACD+L+D ++YLR DY IECD  KHK+  VYAG MI +YP+GI  LY+ LLF +R+V  ++ A R++S R K+TS+LW PYKPS +YYE+IEC RRILL G+VVFI+PNTAAQ+AITL++A FF  +SE ++PY SRW+ W++R+GH V+ +SMY+ALLLKV+VSDE  +SQ  FE +LV++H  M+L+ +VE  ++A
Sbjct: 1014 PYCSICSDGYASNLGYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQFASAANVVYPGVYQQFLDGLKVFGFDLGWLMSAGCVLDMGFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGKNYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPMLYSILLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVA 1404          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 1.450e-125
Identity = 205/415 (49.40%), Postives = 288/415 (69.40%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLLSGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHRE-AGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIEDNDTLVRFKRPSIWF 1242
            P C++CS  Y    G +C+KC    GGIA AV + +  +F  V V  Y++SG+           +   +PLQ++KI++V WQI+TQF S ANV YP +YQ F+D +    FD+ W+LS GC++++DFH RLL  T+GPI A+++L GTYA A   N  +   LR +  KHV + LL+TFLVYSSVSS +F+ FACD+L+D  +YLR DY IECD  KHK+  VYAG MI +YP+GI  LY+ LLF +R+V  ++ A R +S R K+TS+LW PYKPS +YYE+IEC RR+LL G++VFI+PNTAAQ+AITL++A FF  +SE ++PY SRW+ W++R+GH V+ +S+Y+ALLLKV+VSDE  +SQ  FE +LV++H  M+L+ +VE  ++A + R +  ED     RF+R    F
Sbjct: 1074 PYCSICSNGYASNLGYSCSKCFSRSGGIAFAVGLAVVAVFVAVVVIRYIMSGEAGERRIYVFERLGWYVPLQSVKIVIVSWQIVTQFASAANVVYPGVYQQFIDGLKVFGFDLGWLLSVGCVLDMDFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDG-NYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPVLYSILLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWRQKLREDVPA--RFRRGKFLF 1485          
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 2.870e-122
Identity = 209/399 (52.38%), Postives = 276/399 (69.17%), Query Frame = 1
Query:    1 PDCAVCSEHYVEAFGLNCNKCSEA-PGGIALAVAITIFGIFTVVAVFSYLLSG-DMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQNFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYAVAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDDNRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDVFHREAG-REESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFPNTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLALLLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVE 1188
            P C+VCS  Y E  G  C+KC E   GGI + V + +     + A++SY+ SG D    G G++  + R +PLQ++KI++  WQILTQFTS+ANVTYPD+Y++FL  +D  NFD+ W LS  C I++DFHDRLL++T+ PIAA++ L  TY  A          L  V+HKH SM LL+TF VYSSVSS++F+ FAC++L D + YLR+DY IECD  KHK   VYA  MI VY VGI ALYA LLF +RD+  ++   R +  R  + +DLW PY    +YYE+IEC RR+LLAGVVVFI+PNTAAQIA+TL++A  F+ VSE L PY+S WD WI+R+GH V+F SM+L LLLKVNVSDE   SQ  FE +LV++H  MV+A +VE +++   LR E
Sbjct: 1208 PYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVLAAIYSYVTSGEDGMGTGCGWIERVTRYIPLQSVKIVIAAWQILTQFTSIANVTYPDVYEDFLGVLDMFNFDLGWALSVSCTIDMDFHDRLLVSTISPIAALLFLACTYFRAWSLYRRKPDTLGAVQHKHASMVLLLTFFVYSSVSSILFRSFACEELADRKIYLRSDYRIECDSSKHKGFQVYAVFMILVYTVGIPALYAGLLFRDRDLLKQDTSKRRDPPRVTSIADLWEPYNRWAFYYEVIECGRRVLLAGVVVFIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLVAVHALMVMAIVVETVVLFFQLRAE 1606          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1461.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Z8_ECTSI5.650e-14154.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI1.790e-13955.31Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FHH1_ECTSI6.500e-13956.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI1.140e-13656.82Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K0E9_9PHAE1.570e-13656.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G301_ECTSI1.950e-13654.05Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JY65_9PHAE4.320e-13255.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI2.440e-12851.41Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE1.450e-12549.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI5_ECTSI2.870e-12252.38Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1461contigH-elongata_contig1461:13836..16325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.1
Seed ortholog evalue2.3e-123
Seed eggNOG ortholog2880.D8LSC0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size1977
Cds size1293
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1461.3144.1prot_H-elongata_contig1461.3144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1461 14520..16325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.883614-UTR-H-elongata_contig1461:13835..145191622929868.883614-UTR-H-elongata_contig1461:13835..14519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1461 13836..14519 -
1691679188.7634459-UTR-H-elongata_contig1461:13835..145191691679188.7634459-UTR-H-elongata_contig1461:13835..14519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1461 13836..14519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.9028416-CDS-H-elongata_contig1461:14519..155541622929868.9028416-CDS-H-elongata_contig1461:14519..15554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1461 14520..15554 -
1691679188.7761228-CDS-H-elongata_contig1461:14519..155541691679188.7761228-CDS-H-elongata_contig1461:14519..15554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1461 14520..15554 -
1622929868.9200873-CDS-H-elongata_contig1461:16067..163251622929868.9200873-CDS-H-elongata_contig1461:16067..16325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1461 16068..16325 -
1691679188.786474-CDS-H-elongata_contig1461:16067..163251691679188.786474-CDS-H-elongata_contig1461:16067..16325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1461 16068..16325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1461.3144.1

>prot_H-elongata_contig1461.3144.1 ID=prot_H-elongata_contig1461.3144.1|Name=mRNA_H-elongata_contig1461.3144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=431bp
PDCAVCSEHYVEAFGLNCNKCSEAPGGIALAVAITIFGIFTVVAVFSYLL
SGDMERNGQGFVNNIARRLPLQTIKIIVVVWQILTQFTSVANVTYPDIYQ
NFLDSVDFLNFDISWVLSAGCIIELDFHDRLLLTTLGPIAAIVILCGTYA
VAMCRNCNSEIALRNVRHKHVSMALLVTFLVYSSVSSVVFQMFACDDLDD
NRSYLRADYSIECDDPKHKLLMVYAGVMIFVYPVGIAALYAHLLFTNRDV
FHREAGREESFRAKATSDLWTPYKPSRYYYEIIECARRILLAGVVVFIFP
NTAAQIAITLILALFFIFVSEGLAPYESRWDAWISRIGHAVIFMSMYLAL
LLKVNVSDETYNSQMAFETILVSIHVFMVLAALVEAILMACVLRVEQIED
NDTLVRFKRPSIWFVKKDTSLVDFGNPSKS*
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mRNA from alignment at H-elongata_contig1461:13836..16325-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1461.3144.1 ID=mRNA_H-elongata_contig1461.3144.1|Name=mRNA_H-elongata_contig1461.3144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2490bp|location=Sequence derived from alignment at H-elongata_contig1461:13836..16325- (Himanthalia elongata Himel1 dioecious)
CCAGATTGCGCAGTTTGCAGTGAGCACTACGTGGAAGCCTTTGGCCTCAA TTGTAACAAGTGCTCCGAGGCGCCAGGGGGGATCGCGCTTGCCGTCGCCA TCACCATTTTTGGCATATTCACTGTGGTAGCTGTCTTCTCGTATCTGTTG TCGGGTGACATGGAGAGAAACGGACAAGGGTTCGTGAATAATATCGCGCG TCGTCTACCGCTTCAGACCATCAAGATTATAGTCGTGGTGTGGCAGATCC TAACCCAGGTAAATGAGCTTACCACCGCGTCTAAAAGTACTTCACAACGC TTCCAGGTGCAGATTGGCACGGAGAAGCCCCAGGGGTGCTTTATATAGCT TTTATTGACCTAAACCTCACCAGTGAGTTGTGTACAGCGGTGCATTGAAC GCCGGCGAGGAGTTGTTCTCCGCCTATTCCAGAGCAGTGATATTAATATT TTGAATGAAGCAGCCTGGATATAGCTTATGTATCGTCGATGTCTCAGGAT TCCCGGAAGCTCACTAGAGTGATTAAGATGATAGCGACGAGCTAACGACT CATATATGTATATATATGCCAAGGTAGGGAAGCTATTTTCATGATTGTTC GCCGCCCAACGCTTGGTAATCTAAAACCCGGCCGTCCTCGTGCGCAGGAA GCTATCGCCGAACACGTTTGTTTGTGTAACTTCACACGATTGGTAAAAGC TTGCCCTCACTTTGTTTTTCATTATGACGCATTACTTTCCCAAACCTTCC CTGGTGCCTTTCTCCGCGTAGTTTACCTCGGTGGCTAATGTGACCTACCC TGATATTTACCAGAACTTCCTCGACAGCGTCGACTTCTTGAACTTTGACA TAAGCTGGGTTCTGTCAGCCGGGTGCATCATCGAGCTCGACTTCCACGAC CGATTGCTACTGACCACGCTCGGGCCGATCGCCGCAATAGTAATACTGTG CGGTACTTACGCCGTGGCTATGTGCAGGAACTGTAACTCCGAGATCGCAC TTCGAAACGTTCGACACAAACACGTTTCCATGGCACTCCTGGTAACATTC CTGGTGTATTCTAGCGTCAGTTCCGTGGTATTCCAGATGTTTGCGTGTGA TGATCTGGATGATAACAGGAGCTACCTCCGAGCAGACTACAGCATCGAGT GTGACGACCCCAAGCACAAACTCCTCATGGTCTATGCTGGAGTTATGATT TTCGTGTATCCGGTAGGAATAGCGGCCTTGTATGCCCATCTGTTGTTCAC GAATCGTGACGTGTTCCATAGGGAGGCTGGTCGCGAAGAATCCTTCCGCG CGAAGGCGACCTCAGACTTGTGGACGCCTTACAAGCCTTCGCGGTACTAC TACGAGATCATTGAATGTGCTCGACGGATTTTACTTGCTGGGGTAGTCGT GTTTATATTCCCTAACACCGCGGCCCAGATCGCGATTACGCTAATCTTAG CCTTATTTTTCATATTCGTTTCAGAGGGTTTGGCCCCGTACGAGTCGCGA TGGGACGCGTGGATCAGCCGTATCGGCCACGCCGTGATTTTCATGAGCAT GTATCTGGCTCTATTACTTAAGGTGAACGTGTCAGATGAGACCTACAATA GCCAAATGGCGTTCGAGACAATCCTCGTCTCCATTCACGTTTTCATGGTA CTGGCGGCATTGGTTGAGGCTATTCTCATGGCATGTGTGCTTAGAGTGGA ACAGATAGAAGATAACGACACCTTGGTCAGGTTCAAGCGTCCGTCGATAT GGTTCGTGAAGAAAGATACATCTCTCGTAGATTTTGGTAATCCCTCGAAG AGTTGACCAAGCAGAGTTTCCATGTGACTGCCATGCTGCCATTTTGTTTG AAAACAATGACTATTTACCCGGGTTTGCGGGGGGTGAAGACTCCTCCTCG CAGCTACCGCGATAGTTTTGCTAATACTAGAACTAGATTATTTCTCAGCG AGGAGCGCCGTACCTGGATCACTTATGCATTGCTTATGTGAGTCTCTATA CGTATAATTCAAAGAGGACATATTGCTTATCACGGCTTCGTAGACGCGTA GAAAGACCACGTAGTAAGGAATATATCCCCCATTGCCTTCAAACTGTCAA CAAGGGAATGAGATTTTTCCGTGCTCTTCTTGGCATGTGAATGTAATGTG CGACAGCACTCTATAGCTAATAAGCGCGAGGCAGGTGTTTGTGTTATAAA ATAGAACGAACTTGAAGCGAGAAACTGTACCGAGAAGGATCTATACTCCG GCTTCCTCTGCTGTATGTTCGTCGTAGCAAAACGACCTGCAGTCGACGAA CCATATGTGGCATGTGTTCATCTTCTCAGATTGGTACGGTTGATGCTGCC CTGCAAGTTTAGAGCTAAACTAGCTTTATTCGAGTGAGCTGTGCTTTACG TTTTTGCCTACTCTCACGGCGGCACGATTTAAACAGTAGCTGGGTTGAGG TTTCGCGCACTGAGTCAACATCAAACAAACCATTTAAACC
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Coding sequence (CDS) from alignment at H-elongata_contig1461:13836..16325-

>mRNA_H-elongata_contig1461.3144.1 ID=mRNA_H-elongata_contig1461.3144.1|Name=mRNA_H-elongata_contig1461.3144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2586bp|location=Sequence derived from alignment at H-elongata_contig1461:13836..16325- (Himanthalia elongata Himel1 dioecious)
CCAGATTGCGCAGTTTGCAGTGAGCACTACGTGGAAGCCTTTGGCCTCAA
TTGTAACAAGTGCTCCGAGGCGCCAGGGGGGATCGCGCTTGCCGTCGCCA
TCACCATTTTTGGCATATTCACTGTGGTAGCTGTCTTCTCGTATCTGTTG
TCGGGTGACATGGAGAGAAACGGACAAGGGTTCGTGAATAATATCGCGCG
TCGTCTACCGCTTCAGACCATCAAGATTATAGTCGTGGTGTGGCAGATCC
TAACCCAGCCAGATTGCGCAGTTTGCAGTGAGCACTACGTGGAAGCCTTT
GGCCTCAATTGTAACAAGTGCTCCGAGGCGCCAGGGGGGATCGCGCTTGC
CGTCGCCATCACCATTTTTGGCATATTCACTGTGGTAGCTGTCTTCTCGT
ATCTGTTGTCGGGTGACATGGAGAGAAACGGACAAGGGTTCGTGAATAAT
ATCGCGCGTCGTCTACCGCTTCAGACCATCAAGATTATAGTCGTGGTGTG
GCAGATCCTAACCCAGTTTACCTCGGTGGCTAATGTGACCTACCCTGATA
TTTACCAGAACTTCCTCGACAGCGTCGACTTCTTGAACTTTGACATAAGC
TGGGTTCTGTCAGCCGGGTGCATCATCGAGCTCGACTTCCACGACCGATT
GCTACTGACCACGCTCGGGCCGATCGCCGCAATAGTAATACTGTGCGGTA
CTTACGCCGTGGCTATGTGCAGGAACTGTAACTCCGAGATCGCACTTCGA
AACGTTCGACACAAACACGTTTCCATGGCACTCCTGGTAACATTCCTGGT
GTATTCTAGCGTCAGTTCCGTGGTATTCCAGATGTTTGCGTGTGATGATC
TGGATGATAACAGGAGCTACCTCCGAGCAGACTACAGCATCGAGTGTGAC
GACCCCAAGCACAAACTCCTCATGGTCTATGCTGGAGTTATGATTTTCGT
GTATCCGGTAGGAATAGCGGCCTTGTATGCCCATCTGTTGTTCACGAATC
GTGACGTGTTCCATAGGGAGGCTGGTCGCGAAGAATCCTTCCGCGCGAAG
GCGACCTCAGACTTGTGGACGCCTTACAAGCCTTCGCGGTACTACTACGA
GATCATTGAATGTGCTCGACGGATTTTACTTGCTGGGGTAGTCGTGTTTA
TATTCCCTAACACCGCGGCCCAGATCGCGATTACGCTAATCTTAGCCTTA
TTTTTCATATTCGTTTCAGAGGGTTTGGCCCCGTACGAGTCGCGATGGGA
CGCGTGGATCAGCCGTATCGGCCACGCCGTGATTTTCATGAGCATGTATC
TGGCTCTATTACTTAAGGTGAACGTGTCAGATGAGACCTACAATAGCCAA
ATGGCGTTCGAGACAATCCTCGTCTCCATTCACGTTTTCATGGTACTGGC
GGCATTGGTTGAGGCTATTCTCATGGCATGTGTGCTTAGAGTGGAACAGA
TAGAAGATAACGACACCTTGGTCAGGTTCAAGCGTCCGTCGATATGGTTC
GTGAAGAAAGATACATCTCTCGTAGATTTTGGTAATCCCTCGAAGAGTTG
ATTTACCTCGGTGGCTAATGTGACCTACCCTGATATTTACCAGAACTTCC
TCGACAGCGTCGACTTCTTGAACTTTGACATAAGCTGGGTTCTGTCAGCC
GGGTGCATCATCGAGCTCGACTTCCACGACCGATTGCTACTGACCACGCT
CGGGCCGATCGCCGCAATAGTAATACTGTGCGGTACTTACGCCGTGGCTA
TGTGCAGGAACTGTAACTCCGAGATCGCACTTCGAAACGTTCGACACAAA
CACGTTTCCATGGCACTCCTGGTAACATTCCTGGTGTATTCTAGCGTCAG
TTCCGTGGTATTCCAGATGTTTGCGTGTGATGATCTGGATGATAACAGGA
GCTACCTCCGAGCAGACTACAGCATCGAGTGTGACGACCCCAAGCACAAA
CTCCTCATGGTCTATGCTGGAGTTATGATTTTCGTGTATCCGGTAGGAAT
AGCGGCCTTGTATGCCCATCTGTTGTTCACGAATCGTGACGTGTTCCATA
GGGAGGCTGGTCGCGAAGAATCCTTCCGCGCGAAGGCGACCTCAGACTTG
TGGACGCCTTACAAGCCTTCGCGGTACTACTACGAGATCATTGAATGTGC
TCGACGGATTTTACTTGCTGGGGTAGTCGTGTTTATATTCCCTAACACCG
CGGCCCAGATCGCGATTACGCTAATCTTAGCCTTATTTTTCATATTCGTT
TCAGAGGGTTTGGCCCCGTACGAGTCGCGATGGGACGCGTGGATCAGCCG
TATCGGCCACGCCGTGATTTTCATGAGCATGTATCTGGCTCTATTACTTA
AGGTGAACGTGTCAGATGAGACCTACAATAGCCAAATGGCGTTCGAGACA
ATCCTCGTCTCCATTCACGTTTTCATGGTACTGGCGGCATTGGTTGAGGC
TATTCTCATGGCATGTGTGCTTAGAGTGGAACAGATAGAAGATAACGACA
CCTTGGTCAGGTTCAAGCGTCCGTCGATATGGTTCGTGAAGAAAGATACA
TCTCTCGTAGATTTTGGTAATCCCTCGAAGAGTTGA
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