mRNA_H-elongata_contig14601.3142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14601.3142.1
Unique NamemRNA_H-elongata_contig14601.3142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: D7FTB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB6_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 6.730e-88
Identity = 144/235 (61.28%), Postives = 171/235 (72.77%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNVTAI---ACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTY 696
            +APN V+ ELCP N+ANR  Y VP  QLT NGM QA  LG+F+R+ Y+ESMDFLPPTLGS      T  FSS+  SD A RCLQTAQAMA GLFP GTGPPGFPNQP+AV TE     FA+LLAAP G C ++ +AD+  +D +RG+E+I  + N+T +   ACG   E Y   D GKEG+VLGVKDV DMLDFDEQQGLPRL S+S++ H   T LAFTLLQERYYS+R Q+ Y
Sbjct:   28 QAPNTVVDELCPANKANRAKYNVPPGQLTENGMNQALKLGNFLRETYIESMDFLPPTLGSG----CTPTFSSWLKSDSAARCLQTAQAMAMGLFPYGTGPPGFPNQPMAVLTEPNR--FASLLAAPHGPCLAQQKADNAAYDSTRGEELIQQSRNITDVVSQACGVPTEAYTNVDNGKEGLVLGVKDVSDMLDFDEQQGLPRLASVSKQAHEDMTQLAFTLLQERYYSNRRQLLY 256          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A6H5L0W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W9_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 7.210e-88
Identity = 142/238 (59.66%), Postives = 168/238 (70.59%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNVTAI---ACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAG 705
            +APN V+ ELCP N+ANR  Y VP  QLT NGM QA  LG+F+R+ Y+ SMDFLPPTLGS     F    SS+  SD A RCLQTAQAMA GLFP GTGPPGFPNQP+ V TE     FA+LLAAP G C ++ +AD+  +D +RG E+I  + N+T +   ACG   E Y   D GKEG+VLGVKDVGDMLDFDEQQGLPRL S+S++ H   T LAFTLLQERYYS+R Q  +  G
Sbjct:   28 QAPNTVVDELCPANKANRAKYNVPPGQLTENGMNQALKLGNFLRETYIGSMDFLPPTLGSGSMPTF----SSWLKSDSAARCLQTAQAMAMGLFPYGTGPPGFPNQPMPVLTEPDR--FASLLAAPHGPCLAQQKADNAAYDSTRGVELIQQSRNITDVVSKACGVPTEAYTNVDNGKEGLVLGVKDVGDMLDFDEQQGLPRLASVSKQAHEDMTQLAFTLLQERYYSNRRQANHLLG 259          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: K3WPM1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPM1_GLOUD)

HSP 1 Score: 181 bits (459), Expect = 1.280e-50
Identity = 105/256 (41.02%), Postives = 143/256 (55.86%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNV---TAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDDFDAAVERHS 759
            +APN V+  +CP N  N  AYKVP EQLT  GMRQ    G ++RK YVE   FL P+L         + F +YF +D A RC Q+A A+  GL+P+GTGP GFP++PV V  +   +   +  AAPKG C +   AD  V+ E+R  E++D    +       CG  VE       G E +VLGVKD+ DM  FD  + LP    ++ E  A+   LAFT L ERYYS+  ++TYW G     LL++ ++A +  S
Sbjct:   38 RAPNGVVAHICPTNSGNLNAYKVPLEQLTEIGMRQMLAAGEYVRKVYVEEKGFLSPSLNGVNH----THFEAYFRADAATRCHQSATALGYGLYPDGTGPKGFPHEPVPVTMQL--LKNEHEFAAPKGPCAATLHADLGVYAETRALELLDENQKMLEKVGEICGVSVEQIPTTPGG-EDLVLGVKDIADMFIFDRDEELPPTKGLTTEISAQIEQLAFTNLMERYYSTDREITYWVGGFADLLLNNLNSAAKPTS 286          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: F0WMG0_9STRA (Uncharacterized protein AlNc14C156G7650 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMG0_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.370e-49
Identity = 104/261 (39.85%), Postives = 144/261 (55.17%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRG--------KEIIDSAGNVTAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDDFDAAVERHS 759
            +APN V   +CPNN AN  AYKVP  QLT NGM Q   +G  IR+ YVE+ +FL  +    +R +F     +YF +D A RC  +A+A+A GL+P G+GP GFP Q V V  E   +   ++ AAPKG CK+    D   + + +         K+++D  G     ACG  + D     +G E ++L VKD+ DML FD+Q+GL  LP +  +T  +   L F  L ERYYSS   +TYW G  P  LL + + A   +S
Sbjct:   38 RAPNYVTHTICPNNHANLQAYKVPPAQLTVNGMNQLVQVGKHIREIYVETQNFLSESFSGEKRLHF----EAYFRADAATRCAHSAEALALGLYPFGSGPEGFPLQLVPVTMEL--LQHEHVFAAPKGPCKATLARDLAQYAQQKAPELFQGEDKDVLDRLG----AACGINMTDVPHL-KGGEDLILAVKDIADMLTFDQQEGLSPLPGLDTDTMKKVEQLGFRNLMERYYSSDRMITYWNGAFPDLLLKNLNDAARPNS 287          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A0P1A552_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A552_PLAHL)

HSP 1 Score: 173 bits (439), Expect = 1.020e-47
Identity = 106/254 (41.73%), Postives = 142/254 (55.91%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRY-VESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNV---TAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDDF-DAAV 747
            +APN +++ +CP N+ N  AY+VP  QLT  GM Q   +G  IR+ Y V+ ++     L  S  G   S F +YF +D A RC Q+A A+  GL+P+GTGP GFP+QPV +  +      A   AAPKG C S  EAD  V+ + R  E+ D   +V      ACG  +ED      G++  VLGVKD+ DM  FD  +GLP L  ++ E   +   LAFT L ERY+SS  +VTYW G     LL+   D AV
Sbjct:   42 RAPNNIVRFICPRNKRNLDAYEVPLTQLTEIGMNQLLAVGEHIRRTYMVDELEHEEAFLSRSLNGVNHSHFETYFRADAATRCAQSATALGYGLYPDGTGPHGFPHQPVPITMQLVENEHA--FAAPKGPCLSTLEADLAVYAQHRAPELFDHYRDVLEQVGKACGVFIEDIPYIPGGEDA-VLGVKDLADMFVFDRDEGLPLLEGVTVEAREKLNQLAFTNLMERYFSSDRKVTYWVGGFSDLLLNTLHDGAV 292          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A8K1CT79_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT79_PYTOL)

HSP 1 Score: 172 bits (437), Expect = 1.960e-47
Identity = 105/252 (41.67%), Postives = 140/252 (55.56%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEII----DSAGNVTAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDDFDAA 744
            +APN +++ +CPNN  N  AY VP EQLT  GM+Q   +G  IRK YVE   FL  T    +  +F     +YF SD A RC Q+A A+  GL+P+GTGP GFP QPV V  +   +   +  AAPKG CK    AD   + ++R KE++    DS   ++ I CG  V D  K  +G E +VL VKD+ DM  FD  + LP L  ++ E   +   LAFT L ERYY++   +TYW G     LL   + A
Sbjct:   39 RAPNDIVERICPNNLKNLEAYNVPLEQLTEFGMQQLVAVGEHIRKVYVEEKKFLSSTFNGVKHAHF----ETYFRSDAATRCSQSATAVGYGLYPDGTGPKGFPRQPVPVTMQL--LQNEHDFAAPKGPCKKTFVADMVKYADTRAKELMTQYNDSLVKMSEI-CGVNVFDVPKM-QGGEDLVLAVKDIADMFIFDRDEQLPPLDGLTPELSEQLEQLAFTNLMERYYTTDRMITYWNGGFSDLLLGKLNEA 282          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: H3GVL5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVL5_PHYRM)

HSP 1 Score: 172 bits (436), Expect = 2.960e-47
Identity = 103/243 (42.39%), Postives = 136/243 (55.97%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRY-VESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKE-------IIDSAGNVTAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAG 705
            +APN ++++ CP N+AN  AYKVP  QLT  GM+Q   +G  +R  Y V+        L  S  G   S F +YF +D A RC Q+A A+  GL+P+GTGP GFP+QPV +  +      A   AAPKG CKS  +AD  V+ E+R  E       I+D  G V    CG  V+D      G E +VLGVKD+ DM  FD  +GLP    ++ E   +   LAFT L ERYYS+  ++TYW G
Sbjct:   41 RAPNDIVKDACPRNKANLDAYKVPLTQLTEVGMKQLQAVGEHVRHTYMVDESQHEEAFLSRSLNGINHSHFETYFRADAATRCSQSATAVGYGLYPDGTGPRGFPHQPVPITMQLVENEHA--FAAPKGPCKSTMDADLAVYAETRAPELFEQYRDILDQLGEV----CGVAVKDIPNVPGG-EDVVLGVKDLADMFIFDHDEGLPLPEGMTVEARQKLEQLAFTNLMERYYSTDREITYWVG 276          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A3M6VR71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR71_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.290e-47
Identity = 102/239 (42.68%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRY-VESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNVT---AIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAG 705
            +APN V++ +CP+N+AN  AYKVP +QLT NGM+Q   +G  IR  Y V+        L  S  G   S F +YF SD A RC Q+A A+A GL+P+GTGP G+P+QPV +  +      A   AA KG CK+  +AD  V+  +R  E+ D   +V       CG  VED      G E +VLGVKD+ DM  FD  +GLP    ++     +   LAFT L ERYYS+  ++TYW G
Sbjct:   28 RAPNDVVKIMCPHNKANLDAYKVPLKQLTENGMKQMQAVGEHIRLTYMVDEPLHEDAFLSRSFNGVNHSHFETYFRSDAATRCSQSAAAVAYGLYPDGTGPQGYPHQPVPITMQLVENEHA--FAATKGPCKNTLDADLAVYANTRAPELFDQYRDVLDQLGAVCGVAVEDIPNLPGG-EDIVLGVKDLADMFGFDRDEGLPLTEGMTVVAREKLEQLAFTNLMERYYSTDREITYWVG 263          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A6G0X1Y2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1Y2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 5.230e-47
Identity = 98/245 (40.00%), Postives = 138/245 (56.33%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNV---TAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLL 726
            + PN +   LCPNN+ N LAY+VP E+LT  GM Q    G  +R  Y+++  FL  ++    R +F     +YF SD A RC Q+A +M  GL+P GTGP GF +QP+AV  E   +   +  AAPKG CK+  +AD K + ++R +E+I+    +       CG  V D      G E +V+G+KD+ D   FD QQGL R+  ++ E  +    LAF  L ERYYS+  ++TYW G  P  LL
Sbjct:   50 RRPNGITSVLCPNNKENALAYEVPPEELTEIGMEQMRLAGREVRHEYIDNQGFLSNSISGPERKHF----ETYFRSDAANRCAQSAISMGYGLYPEGTGPRGFYHQPIAVYMEL--LKDEHEFAAPKGPCKAVLKADIKTYLDTRAQELIEEHRPMLEKVGELCGVSVWDIPNLPDG-EDIVMGIKDIADTFTFDTQQGLHRMKGLTPELQSEIEGLAFQNLMERYYSTNREITYWVGGFPTLLL 287          
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Match: A0A485LMH3_9STRA (Aste57867_23181 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMH3_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.460e-47
Identity = 98/247 (39.68%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    1 KAPNPVMQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPPTLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQPVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEII-DSAGNVTAIA--CGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEETHARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDD 732
            + PNP+ + LCPNN  N   Y VP  QLT  GM+Q   +G  +R+ YV    +L     SS  G     F +YF SD A+RC Q+A +M  GL+P+GTGP GFP+QP+AV  +       +  AA +G C++ +E+D   + E+R +E+I + A  +  +   CG  + D      G E +V G+KD+ D   FD Q GLPR+  ++    A    LAF  L ERYYS+ E++TYW    PF LLD+
Sbjct:   32 RRPNPIAKYLCPNNHNNSETYLVPPAQLTQLGMQQMRAVGEEVRREYVTKQGYL----SSSISGPTREHFETYFRSDSADRCAQSAISMGYGLYPDGTGPEGFPHQPIAVYMQLIRNE--HDFAATEGPCQAISESDVDKYFETRAQELIKEHAPMLETVGQLCGINIWDIPTMTHG-EDIVTGIKDIADAFTFDTQHGLPRMAGLTPALQAEIEGLAFQNLMERYYSTPEEITYWVAGFPFLLLDN 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14601.3142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTB6_ECTSI6.730e-8861.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0W9_9PHAE7.210e-8859.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WPM1_GLOUD1.280e-5041.02Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WMG0_9STRA2.370e-4939.85Uncharacterized protein AlNc14C156G7650 n=1 Tax=Al... [more]
A0A0P1A552_PLAHL1.020e-4741.73Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A8K1CT79_PYTOL1.960e-4741.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GVL5_PHYRM2.960e-4742.39Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3M6VR71_9STRA3.290e-4742.68Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6G0X1Y2_9STRA5.230e-4740.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LMH3_9STRA6.460e-4739.68Aste57867_23181 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14601contigH-elongata_contig14601:4260..7066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.3
Seed ortholog evalue2.2e-70
Seed eggNOG ortholog2880.D7FTB6
KEGG rclassRC00017
KEGG koko:K19283
KEGG ReactionR11527
EggNOG OGs296Q8@1,2RDPG@2759
EC3.1.3.2,3.1.3.5
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons7
Model size764
Cds size744
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14601.3142.1prot_H-elongata_contig14601.3142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14601 4260..7048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.6231017-CDS-H-elongata_contig14601:4259..43341622929868.6231017-CDS-H-elongata_contig14601:4259..4334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 4260..4334 -
1691679188.6423137-CDS-H-elongata_contig14601:4259..43341691679188.6423137-CDS-H-elongata_contig14601:4259..4334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 4260..4334 -
1622929868.6394498-CDS-H-elongata_contig14601:4594..46961622929868.6394498-CDS-H-elongata_contig14601:4594..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 4595..4696 -
1691679188.6539211-CDS-H-elongata_contig14601:4594..46961691679188.6539211-CDS-H-elongata_contig14601:4594..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 4595..4696 -
1622929868.6541736-CDS-H-elongata_contig14601:5116..52241622929868.6541736-CDS-H-elongata_contig14601:5116..5224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 5117..5224 -
1691679188.6630263-CDS-H-elongata_contig14601:5116..52241691679188.6630263-CDS-H-elongata_contig14601:5116..5224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 5117..5224 -
1622929868.6724472-CDS-H-elongata_contig14601:5515..56441622929868.6724472-CDS-H-elongata_contig14601:5515..5644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 5516..5644 -
1691679188.6717591-CDS-H-elongata_contig14601:5515..56441691679188.6717591-CDS-H-elongata_contig14601:5515..5644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 5516..5644 -
1622929868.6882348-CDS-H-elongata_contig14601:6088..62011622929868.6882348-CDS-H-elongata_contig14601:6088..6201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6089..6201 -
1691679188.6809266-CDS-H-elongata_contig14601:6088..62011691679188.6809266-CDS-H-elongata_contig14601:6088..6201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6089..6201 -
1622929868.705223-CDS-H-elongata_contig14601:6474..66281622929868.705223-CDS-H-elongata_contig14601:6474..6628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6475..6628 -
1691679188.6891532-CDS-H-elongata_contig14601:6474..66281691679188.6891532-CDS-H-elongata_contig14601:6474..6628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6475..6628 -
1622929868.7270255-CDS-H-elongata_contig14601:6985..70481622929868.7270255-CDS-H-elongata_contig14601:6985..7048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6986..7048 -
1691679188.7006044-CDS-H-elongata_contig14601:6985..70481691679188.7006044-CDS-H-elongata_contig14601:6985..7048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 6986..7048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.7440708-UTR-H-elongata_contig14601:7048..70661622929868.7440708-UTR-H-elongata_contig14601:7048..7066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 7049..7066 -
1691679188.7105913-UTR-H-elongata_contig14601:7048..70661691679188.7105913-UTR-H-elongata_contig14601:7048..7066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 7049..7066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14601.3142.1

>prot_H-elongata_contig14601.3142.1 ID=prot_H-elongata_contig14601.3142.1|Name=mRNA_H-elongata_contig14601.3142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
MQELCPNNEANRLAYKVPQEQLTANGMRQAYHLGSFIRKRYVESMDFLPP
TLGSSRRGNFTSEFSSYFMSDPAERCLQTAQAMAQGLFPNGTGPPGFPNQ
PVAVQTEQASMPFANLLAAPKGACKSKAEADDKVFDESRGKEIIDSAGNV
TAIACGTKVEDYAKADRGKEGMVLGVKDVGDMLDFDEQQGLPRLPSISEE
THARYTALAFTLLQERYYSSREQVTYWAGDLPFQLLDDFDAAVERHSM
back to top

mRNA from alignment at H-elongata_contig14601:4260..7066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14601.3142.1 ID=mRNA_H-elongata_contig14601.3142.1|Name=mRNA_H-elongata_contig14601.3142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2807bp|location=Sequence derived from alignment at H-elongata_contig14601:4260..7066- (Himanthalia elongata Himel1 dioecious)
AAGGCGCCCAACCCAGTGATGCAAGAGCTGTGCCCAAACAACGAAGCGAA TCGGTTGGCGTACAAAGTCCCACAGGAGCAGGTATGGACCCGCTGCATCT CACTTTGCCAATTTGCCCTAATAAACGCCTCGGGAGCCACTCGTTTGGGA CTGAACGGTTGACACAGCAATAGGTTGTAAGAAATACTGTATTTAATACT TGTACGAAGTAAGTTATTGGGTACTGGTATTGCGTATTAGTATTTGCTAC AGCTACGCGAAGGATGAAGAGCACAACACATCCATGGTGCACTTCCGTGT ATTATATACGATACAACCGTACACAAACGATACGTGGTGACCGTGGAAAG GAATTTATTGCGGAGCTTCCTGAATTGTTTGTCTTTGATCGGTGCGGCGT CGACTCAACGTTTCTACCCCGGGGTGTTTTGCTGGTAGCTGACGGCAAAC GGGATGCGACAGGCATACCATCTGGGTTCGTTTATCCGCAAACGATACGT GGAGAGCATGGATTTCTTGCCTCCGACCCTAGGAAGCAGTCGGCGCGGGA ACTTCACTTCGGAATTCAGCTCGTACTTCATGTCCGACCCAGGTGATCGT GCCTATCAGAATCAACGGTTGAGTTTATCGCCATAGACGCGGTAGGTCCG AGCAATGCGTGGAACCATGAACGCTTGTTCAGTCGCTCTAAAACTCGGGC CAGTGTATGTGACATAGTTCGTTATTTTTTCGTCGTTAGGCTAAATTAAA CCAATGTTCGTCTGCGTAGTACACAGCACGATGGAGTAATGGTCAGCTAA CGGCTGGGAATCCCCAACGTTGCCCTCTGTTTCTCAAACTGTCGGTGTCG TGGAAACTTGAGCAGCTGAGCGATGTTTGCAGACGGCGCAGGCAATGGCG CAAGGACTCTTCCCAAACGGAACGGGCCCTCCAGGCTTTCCTAATCAGCC GGTCGCTGTCCAGACGGAGCAGGCAAGCGTGCGATTGGATCGTCGAACAC ACCGCCCGGACCATTGAGATTACTTACTTGCTCGATTATATTAAGTCTAA CCCTAACCCATGCTATGCGATGTTGTTCTGTAATTAAGATGATGTGGGTA ACCATCTGTGCGCCGTTCCTGTGTTAGTGAGGCATTAATACAGCAAGTTG AACCAACTCACCATGTGTAAGCATCGACTTGCGACACCTATCTGATGTCA ATAATCTGAACAAGGATCTCCACCGCAACATTGACCGTCGCTGGAAATGA TTTTGAGTGGTCCTTATTCGCGATACGCCCCGCCGTTTGCTTTCGTGACT AAAAGTATTGATTAGTTCAGTACAAAAAAACAACAACTCGGCCGTGGAAG CTATCATAGAAAGTCCTTCCCTTTACCTTTGACGCGTTTTCCACCATGCA ATACACGGCCTCCCATCTGCAGATGCCGTTCGCTAATCTACTGGCGGCGC CTAAGGGTGCATGCAAGTCAAAGGCTGAGGCGGATGACAAAGTTTTCGAT GAGAGTAGAGGAAAGGAAATCATCGACAGTGCGGGGAACGTCACTGCCAT CGTTGCCAAGGCGTGTACACGCAAAACCCCGCTATATTCACAGAAAAATA ATGCAGTAGCGCGCAATCGTGCTATAGATGAACACGACGCCGTGTGTTCG ATGGATAAAGGTTGCTCGCTGTTTTGTGCGTCACTAGCTCCATGAAGAGC GTCCATCGGGTGTGCAGCTGCAATGATGTGCTTAGTCACAAGATTTCAAA ATCGTGTTTGGAACTATTTTCAATGGCAGTTTAATCCATTACGTTACACC GTTTGTATGCTTTCCGTGGACTATGCCGTTTTTTACCATAAGGCGTGCGG CACAAAGGTGGAGGATTATGCAAAAGCGGATAGGGGTAAGGAAGGAATGG TTCTGGGCGTGAAAGACGTCGGCGACATGCTGGACTTCGACGAACAACAG GTTTTGCACTGGATAAGGTGTACAGGGGGGGGGCGGGGGTGTCGCGATAA ATGAAGTGATTGGCACTAGATCTCAATACATACGCGCAACCCTTCGTGGT CATCCCTTCACATACGAATCAATGATATCGGTACTACTTTTGCGGGTTCC TTCGTGATATGATATACTGTATTGGGCGGTACAACTCTTGTTGTTTTGAT AATATTCCAATTTTGAGCTATTCATCGAGCGCAATTCACACACGGCCTAT GCACTACCACAAGCAGCTGATTGAGAATCAATCATCAATAATCAATTATC AATAATCAATCATCAATCGTCGAGCCTTTTTGGAGCGACTGATTGTCTAG TACGGACCAATACAACGCCTTCATTAATGCTTTCTAAGTCTAGCTCCACC CCGTGGCCCGTACACTTCAGGGGCTGCCCAGGCTTCCGTCAATTTCGGAG GAGACGCACGCAAGGTACACCGCTTTAGCATTCACTCTTCTACAAGAGAG GTACTACTCTAGTAGAGAACAGGTGAGAAAAAAATGGGAAGAGGTCAATT ATGTGTTGCCGATGGAACTCCCGGCTGGTGTCAAGAGTCGACGACGTTCG TATCTGCTTTCAATCGACAAAGACAAACGTATGTTTTTTTGCTGTTGGTC GTTACTCCGGTGTCATCCCCGACGTCGAGAACTATAGCGTCGTTTGCTGT ATTGTTTTTTAGAGCGCTTTTGGGACGCTTACATTGATATATGGCTTGCT CCAAGTGAAACGTCATGCCACGGTCGAAACAGGTAACCTATTGGGCCGGA GATCTCCCCTTTCAGCTTCTGGACGACTTCGACGCCGCGGTGGAGCGGCA CAGTATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14601:4260..7066-

>mRNA_H-elongata_contig14601.3142.1 ID=mRNA_H-elongata_contig14601.3142.1|Name=mRNA_H-elongata_contig14601.3142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig14601:4260..7066- (Himanthalia elongata Himel1 dioecious)
ATGCAAGAGCTGTGCCCAAACAACGAAGCGAATCGGTTGGCGTACAAAGT
CCCACAGGAGCAGATGCAAGAGCTGTGCCCAAACAACGAAGCGAATCGGT
TGGCGTACAAAGTCCCACAGGAGCAGCTGACGGCAAACGGGATGCGACAG
GCATACCATCTGGGTTCGTTTATCCGCAAACGATACGTGGAGAGCATGGA
TTTCTTGCCTCCGACCCTAGGAAGCAGTCGGCGCGGGAACTTCACTTCGG
AATTCAGCTCGTACTTCATGTCCGACCCAGCTGACGGCAAACGGGATGCG
ACAGGCATACCATCTGGGTTCGTTTATCCGCAAACGATACGTGGAGAGCA
TGGATTTCTTGCCTCCGACCCTAGGAAGCAGTCGGCGCGGGAACTTCACT
TCGGAATTCAGCTCGTACTTCATGTCCGACCCAGCTGAGCGATGTTTGCA
GACGGCGCAGGCAATGGCGCAAGGACTCTTCCCAAACGGAACGGGCCCTC
CAGGCTTTCCTAATCAGCCGGTCGCTGTCCAGACGGAGCAGGCAAGCCTG
AGCGATGTTTGCAGACGGCGCAGGCAATGGCGCAAGGACTCTTCCCAAAC
GGAACGGGCCCTCCAGGCTTTCCTAATCAGCCGGTCGCTGTCCAGACGGA
GCAGGCAAGCATGCCGTTCGCTAATCTACTGGCGGCGCCTAAGGGTGCAT
GCAAGTCAAAGGCTGAGGCGGATGACAAAGTTTTCGATGAGAGTAGAGGA
AAGGAAATCATCGACAGTGCGGGGAACGTCACTGCCATCATGCCGTTCGC
TAATCTACTGGCGGCGCCTAAGGGTGCATGCAAGTCAAAGGCTGAGGCGG
ATGACAAAGTTTTCGATGAGAGTAGAGGAAAGGAAATCATCGACAGTGCG
GGGAACGTCACTGCCATCGCGTGCGGCACAAAGGTGGAGGATTATGCAAA
AGCGGATAGGGGTAAGGAAGGAATGGTTCTGGGCGTGAAAGACGTCGGCG
ACATGCTGGACTTCGACGAACAACAGGCGTGCGGCACAAAGGTGGAGGAT
TATGCAAAAGCGGATAGGGGTAAGGAAGGAATGGTTCTGGGCGTGAAAGA
CGTCGGCGACATGCTGGACTTCGACGAACAACAGGGGCTGCCCAGGCTTC
CGTCAATTTCGGAGGAGACGCACGCAAGGTACACCGCTTTAGCATTCACT
CTTCTACAAGAGAGGTACTACTCTAGTAGAGAACAGGGGCTGCCCAGGCT
TCCGTCAATTTCGGAGGAGACGCACGCAAGGTACACCGCTTTAGCATTCA
CTCTTCTACAAGAGAGGTACTACTCTAGTAGAGAACAGGTAACCTATTGG
GCCGGAGATCTCCCCTTTCAGCTTCTGGACGACTTCGACGCCGCGGTGGA
GCGGCACAGTATGGTAACCTATTGGGCCGGAGATCTCCCCTTTCAGCTTC
TGGACGACTTCGACGCCGCGGTGGAGCGGCACAGTATG
back to top