mRNA_H-elongata_contig145983.3140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145983.3140.1
Unique NamemRNA_H-elongata_contig145983.3140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145983.3140.1 vs. uniprot
Match: UPI001E26F6F4 (craniofacial development protein 2-like n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E26F6F4)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-6
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   67 LQCVRDEGGTLLRDEGRIRERWVRFFRALLKAKSD---ILDPDIPKRLPQHSVASSLGIEPT---EEIGTAMKAMSNAKAVGPDGLLAEL 318
            ++C++DE G +L D   I+ERW R+F +L+  +++   +L+          +V S+ G+      EE+  A+++M N KAVGPDG+ AE+
Sbjct:  423 MKCIKDEAGKILTDNEEIKERWKRYFNSLMNEENEWSGVLE----------NVRSNEGMVKEVSIEEVKMAVQSMKNGKAVGPDGIPAEV 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145983.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E26F6F42.090e-634.44craniofacial development protein 2-like n=1 Tax=Me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145983contigH-elongata_contig145983:1320..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.4122562-CDS-H-elongata_contig145983:1319..16371622929868.4122562-CDS-H-elongata_contig145983:1319..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145983 1320..1637 +
1691679188.5432296-CDS-H-elongata_contig145983:1319..16371691679188.5432296-CDS-H-elongata_contig145983:1319..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145983 1320..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145983.3140.1prot_H-elongata_contig145983.3140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145983 1320..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145983.3140.1

>prot_H-elongata_contig145983.3140.1 ID=prot_H-elongata_contig145983.3140.1|Name=mRNA_H-elongata_contig145983.3140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GDQHGFFQNIKSVQLEETKKVKLQCVRDEGGTLLRDEGRIRERWVRFFRA
LLKAKSDILDPDIPKRLPQHSVASSLGIEPTEEIGTAMKAMSNAKAVGPD
GLLAEL
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mRNA from alignment at H-elongata_contig145983:1320..1637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145983.3140.1 ID=mRNA_H-elongata_contig145983.3140.1|Name=mRNA_H-elongata_contig145983.3140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig145983:1320..1637+ (Himanthalia elongata Himel1 dioecious)
GGAGACCAGCACGGATTCTTCCAAAACATCAAATCGGTGCAACTGGAGGA
GACGAAGAAGGTCAAATTACAGTGCGTCCGCGACGAGGGAGGAACACTGC
TACGCGACGAAGGGCGAATCCGCGAGAGGTGGGTGCGATTCTTCCGCGCG
CTGTTGAAAGCGAAATCCGACATTCTCGATCCCGACATCCCGAAGAGGCT
GCCACAGCATTCAGTCGCGAGTTCCCTCGGGATCGAGCCCACGGAGGAGA
TTGGCACAGCGATGAAGGCAATGTCAAACGCGAAAGCAGTGGGGCCGGAT
GGCCTTCTCGCAGAACTG
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Coding sequence (CDS) from alignment at H-elongata_contig145983:1320..1637+

>mRNA_H-elongata_contig145983.3140.1 ID=mRNA_H-elongata_contig145983.3140.1|Name=mRNA_H-elongata_contig145983.3140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig145983:1320..1637+ (Himanthalia elongata Himel1 dioecious)
GGAGACCAGCACGGATTCTTCCAAAACATCAAATCGGTGCAACTGGAGGA
GACGAAGAAGGTCAAATTACAGTGCGTCCGCGACGAGGGAGGAACACTGC
TACGCGACGAAGGGCGAATCCGCGAGAGGTGGGTGCGATTCTTCCGCGCG
CTGTTGAAAGCGAAATCCGACATTCTCGATCCCGACATCCCGAAGAGGCT
GCCACAGCATTCAGTCGCGAGTTCCCTCGGGATCGAGCCCACGGAGGAGA
TTGGCACAGCGATGAAGGCAATGTCAAACGCGAAAGCAGTGGGGCCGGAT
GGCCTTCTCGCAGAACTGGGAGACCAGCACGGATTCTTCCAAAACATCAA
ATCGGTGCAACTGGAGGAGACGAAGAAGGTCAAATTACAGTGCGTCCGCG
ACGAGGGAGGAACACTGCTACGCGACGAAGGGCGAATCCGCGAGAGGTGG
GTGCGATTCTTCCGCGCGCTGTTGAAAGCGAAATCCGACATTCTCGATCC
CGACATCCCGAAGAGGCTGCCACAGCATTCAGTCGCGAGTTCCCTCGGGA
TCGAGCCCACGGAGGAGATTGGCACAGCGATGAAGGCAATGTCAAACGCG
AAAGCAGTGGGGCCGGATGGCCTTCTCGCAGAACTG
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