mRNA_H-elongata_contig145956.3138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145956.3138.1
Unique NamemRNA_H-elongata_contig145956.3138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145956.3138.1 vs. uniprot
Match: A0A6H5K1Z1_9PHAE (DHHA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.270e-12
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 RDIAFDVHEGVGRPLVGSCCTLVAERMLERASHLLSPDVARLLLGVVKYST 153
            R++AF+ ++G G+ LVGSCCT+VAERML++A  LLS DVA+LLLGV+   T
Sbjct:  278 RNVAFEANDGGGKALVGSCCTIVAERMLDQAPALLSSDVAQLLLGVILVDT 328
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BLAST of mRNA_H-elongata_contig145956.3138.1 vs. uniprot
Match: A0A067C251_SAPPC (DHHA2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C251_SAPPC)

HSP 1 Score: 47.4 bits (111), Expect = 9.960e-5
Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 RDIAFDVHEGVGRPLVGSCCTLVAERMLERASHLLSPDVARLLLGVVKYST 153
            RDIAF+  +  GR LVGS CTLVAER L      L P  A LLLGV+   T
Sbjct:  152 RDIAFERTDAGGRALVGSACTLVAERSLS-----LEPLEATLLLGVIALDT 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145956.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1Z1_9PHAE6.270e-1260.78DHHA2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A067C251_SAPPC9.960e-554.90DHHA2 domain-containing protein n=2 Tax=Saprolegni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145956contigH-elongata_contig145956:99..254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D8LQ18
Preferred namePRUNE2
KEGG rclassRC00002
KEGG koko:K01230,ko:K01514,ko:K18449
KEGG ReactionR03409,R05982,R06722
KEGG Pathwayko00230,ko00510,ko00513,ko01100,ko04141,map00230,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0003674,GO:0003824,GO:0004309,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006112,GO:0006793,GO:0006797,GO:0006798,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015980,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.pyrophosphatase activity
EggNOG OGsCOG1227@1,KOG4129@2759
EC3.2.1.113,3.6.1.11
COG Functional cat.C
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.3163128-CDS-H-elongata_contig145956:98..2541622929868.3163128-CDS-H-elongata_contig145956:98..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145956 99..254 -
1691679188.5184803-CDS-H-elongata_contig145956:98..2541691679188.5184803-CDS-H-elongata_contig145956:98..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145956 99..254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145956.3138.1prot_H-elongata_contig145956.3138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145956 99..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145956.3138.1

>prot_H-elongata_contig145956.3138.1 ID=prot_H-elongata_contig145956.3138.1|Name=mRNA_H-elongata_contig145956.3138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
RDIAFDVHEGVGRPLVGSCCTLVAERMLERASHLLSPDVARLLLGVVKYS
TA
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mRNA from alignment at H-elongata_contig145956:99..254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145956.3138.1 ID=mRNA_H-elongata_contig145956.3138.1|Name=mRNA_H-elongata_contig145956.3138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig145956:99..254- (Himanthalia elongata Himel1 dioecious)
AGGGACATTGCGTTCGACGTGCACGAGGGAGTCGGGCGGCCGCTGGTGGG
CTCCTGCTGTACCCTGGTCGCGGAGAGGATGCTAGAGAGGGCCTCCCACC
TCCTCTCGCCGGACGTGGCCCGGCTACTACTGGGAGTGGTAAAATATAGC
ACTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig145956:99..254-

>mRNA_H-elongata_contig145956.3138.1 ID=mRNA_H-elongata_contig145956.3138.1|Name=mRNA_H-elongata_contig145956.3138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig145956:99..254- (Himanthalia elongata Himel1 dioecious)
AGGGACATTGCGTTCGACGTGCACGAGGGAGTCGGGCGGCCGCTGGTGGG
CTCCTGCTGTACCCTGGTCGCGGAGAGGATGCTAGAGAGGGCCTCCCACC
TCCTCTCGCCGGACGTGGCCCGGCTACTACTGGGAGTGGTAAAATATAGC
ACTGCTAGGGACATTGCGTTCGACGTGCACGAGGGAGTCGGGCGGCCGCT
GGTGGGCTCCTGCTGTACCCTGGTCGCGGAGAGGATGCTAGAGAGGGCCT
CCCACCTCCTCTCGCCGGACGTGGCCCGGCTACTACTGGGAGTGGTAAAA
TATAGCACTGCT
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