mRNA_H-elongata_contig145892.3136.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145892.3136.1
Unique NamemRNA_H-elongata_contig145892.3136.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: E9HQM3_DAPPU (PC4 domain-containing protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9HQM3_DAPPU)

HSP 1 Score: 55.5 bits (132), Expect = 5.910e-9
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGL 159
            +D+REYY KD G   PGKKGI+LNS+QW+ ++S +  +DE LE +
Sbjct:   21 IDIREYYEKD-GKQLPGKKGISLNSTQWNKLKSIISEVDEALEAI 64          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: UPI001EDCD53F (RNA polymerase II transcriptional coactivator-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDCD53F)

HSP 1 Score: 56.6 bits (135), Expect = 9.610e-9
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGL 159
            +D+REYY KD G   PGKKGI+LNS+QWS ++S +  +DE LE +
Sbjct:   89 IDIREYYEKD-GKQLPGKKGISLNSTQWSKLKSIISEVDEALEAI 132          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: D8LDB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.330e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGL 159
            VD+RE+Y K+  ++ PGKKG++LN SQW I+RSA   ID  +  L
Sbjct:  213 VDIREFYLKEAKEYRPGKKGMSLNPSQWEILRSAAGQIDANIRRL 257          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: A0A7R8VR66_TIMDO (Hypothetical protein n=8 Tax=Timema TaxID=61471 RepID=A0A7R8VR66_TIMDO)

HSP 1 Score: 51.6 bits (122), Expect = 6.110e-7
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLE 153
            VD+REYY  D G+  PGKKGI+L++SQW  ++  VD +DE+++
Sbjct:   71 VDIREYYEAD-GELKPGKKGISLSTSQWHKLKDIVDEVDEVVK 112          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: A0A8J2LH46_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LH46_9HEXA)

HSP 1 Score: 50.4 bits (119), Expect = 2.200e-6
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 ITNFDAKV--DVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAID 141
            + +F  KV  D+REYY    G+  PGKKGI+LN++QWS ++S ++ +D
Sbjct:   75 VRDFRGKVLIDIREYYTTADGEERPGKKGISLNATQWSKLKSLIEDVD 122          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: A0A067QUX2_ZOONE (Putative RNA polymerase II transcriptional coactivator n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QUX2_ZOONE)

HSP 1 Score: 49.3 bits (116), Expect = 5.140e-6
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLE 153
            VD+REYY  D GD  PGKKGI+L+++QW  ++S +  +D+ ++
Sbjct:   74 VDIREYYEAD-GDLKPGKKGISLSTTQWQKLKSLISEVDDAVK 115          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: A0A166XCD3_9AGAM (PC4-domain-containing protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166XCD3_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 5.630e-6
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGLR 162
            +D+RE+Y KD G   PGKKGI+L+S QW++++    AID M E ++
Sbjct:  122 LDIREFYEKD-GKELPGKKGISLSSEQWALLKDNTAAIDSMFEEIK 166          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: D7FR01_ECTSI (PC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR01_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 8.690e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGL 159
            VD+REYY KD G+  PGKKGI+L++  W +++  +D I+  +E L
Sbjct:   83 VDIREYYEKD-GEMRPGKKGISLSTEHWEVLKENMDDINAKVEEL 126          
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Match: A0A2B4T1L8_STYPI (Coiled-coil domain-containing protein 15 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4T1L8_STYPI)

HSP 1 Score: 48.1 bits (113), Expect = 6.100e-5
Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   25 VDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEMLEGLR 162
            VD+RE+Y  + G+  PG+KGI+L  SQW  ++S +  ID  +E ++
Sbjct:   77 VDIREFYEDNEGEMKPGRKGISLQLSQWEALKSHITDIDVAIEEMK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145892.3136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
E9HQM3_DAPPU5.910e-953.33PC4 domain-containing protein (Fragment) n=2 Tax=D... [more]
UPI001EDCD53F9.610e-955.56RNA polymerase II transcriptional coactivator-like... [more]
D8LDB6_ECTSI2.330e-751.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R8VR66_TIMDO6.110e-751.16Hypothetical protein n=8 Tax=Timema TaxID=61471 Re... [more]
A0A8J2LH46_9HEXA2.200e-645.83Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A067QUX2_ZOONE5.140e-646.51Putative RNA polymerase II transcriptional coactiv... [more]
A0A166XCD3_9AGAM5.630e-647.83PC4-domain-containing protein n=1 Tax=Fibularhizoc... [more]
D7FR01_ECTSI8.690e-646.67PC4 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2B4T1L8_STYPI6.100e-541.30Coiled-coil domain-containing protein 15 n=3 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145892contigH-elongata_contig145892:14..178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-25_001840.1
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.162827-CDS-H-elongata_contig145892:13..1781622929868.162827-CDS-H-elongata_contig145892:13..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145892 14..178 +
1691679188.4509373-CDS-H-elongata_contig145892:13..1781691679188.4509373-CDS-H-elongata_contig145892:13..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145892 14..178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145892.3136.1prot_H-elongata_contig145892.3136.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145892 14..178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145892.3136.1

>prot_H-elongata_contig145892.3136.1 ID=prot_H-elongata_contig145892.3136.1|Name=mRNA_H-elongata_contig145892.3136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
PITNFDAKVDVREYYAKDTGDFAPGKKGITLNSSQWSIMRSAVDAIDEML
EGLR*
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mRNA from alignment at H-elongata_contig145892:14..178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145892.3136.1 ID=mRNA_H-elongata_contig145892.3136.1|Name=mRNA_H-elongata_contig145892.3136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig145892:14..178+ (Himanthalia elongata Himel1 dioecious)
CCGATCACAAACTTTGACGCCAAGGTTGACGTCAGAGAGTACTATGCAAA GGACACTGGGGATTTCGCCCCTGGCAAGAAAGGAATCACGCTCAATTCTT CTCAGTGGAGTATTATGCGGAGTGCGGTGGATGCCATCGACGAAATGCTG GAGGGACTGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig145892:14..178+

>mRNA_H-elongata_contig145892.3136.1 ID=mRNA_H-elongata_contig145892.3136.1|Name=mRNA_H-elongata_contig145892.3136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig145892:14..178+ (Himanthalia elongata Himel1 dioecious)
CCGATCACAAACTTTGACGCCAAGGTTGACGTCAGAGAGTACTATGCAAA
GGACACTGGGGATTTCGCCCCTGGCAAGAAAGGAATCACGCTCAATTCTT
CTCAGTGGAGTATTATGCGGAGTGCGGTGGATGCCATCGACGAAATGCTG
GAGGGACTGAGGTAGCCGATCACAAACTTTGACGCCAAGGTTGACGTCAG
AGAGTACTATGCAAAGGACACTGGGGATTTCGCCCCTGGCAAGAAAGGAA
TCACGCTCAATTCTTCTCAGTGGAGTATTATGCGGAGTGCGGTGGATGCC
ATCGACGAAATGCTGGAGGGACTGAGGTAG
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