mRNA_H-elongata_contig145831.3134.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145831.3134.1
Unique NamemRNA_H-elongata_contig145831.3134.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145831.3134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145831contigH-elongata_contig145831:816..1588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog67593.Physo132095
EggNOG OGs2CXBZ@1,2S4KE@2759,3QGA3@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.901972-CDS-H-elongata_contig145831:815..9561622929867.901972-CDS-H-elongata_contig145831:815..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145831 816..956 -
1691679188.3484519-CDS-H-elongata_contig145831:815..9561691679188.3484519-CDS-H-elongata_contig145831:815..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145831 816..956 -
1622929867.91598-CDS-H-elongata_contig145831:1498..15881622929867.91598-CDS-H-elongata_contig145831:1498..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145831 1499..1588 -
1691679188.358329-CDS-H-elongata_contig145831:1498..15881691679188.358329-CDS-H-elongata_contig145831:1498..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145831 1499..1588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145831.3134.1prot_H-elongata_contig145831.3134.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145831 816..1588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145831.3134.1

>prot_H-elongata_contig145831.3134.1 ID=prot_H-elongata_contig145831.3134.1|Name=mRNA_H-elongata_contig145831.3134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
ACVGTVELIAAKTENFGNDGACMQCDPANNVCPPGCQALINELYVNCDSV
TMPDGRYYDPSFLIDGEWSNNVRLKYK
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mRNA from alignment at H-elongata_contig145831:816..1588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145831.3134.1 ID=mRNA_H-elongata_contig145831.3134.1|Name=mRNA_H-elongata_contig145831.3134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=773bp|location=Sequence derived from alignment at H-elongata_contig145831:816..1588- (Himanthalia elongata Himel1 dioecious)
GCATGCGTGGGGACGGTCGAGCTCATTGCGGCAAAAACTGAGAACTTTGG
AAACGATGGCGCCTGTATGCAGTGTGACCCGGCCAACAACGTAGGTCTAA
CAGTGTGACCCGCACATCATCGCCACCGTAGACTTCCAGTAAAGGGACCG
GGGCTTGCAGAGCGAAGGGAGGGGGGGGGAGTAAGCCATTCACCCTGATT
TTGCAACTCCTGTGGTGCCTCCCCTACCAACACGAAGAGTATTCGTGTGA
GGTGTGATGCCTCCAAGCCGCTGGCGCATTACGAAGCGCTTATGTTTTTA
CTAACCCACATTCATTTTTTTTAACTCGCCGATGAGTGGCTCTCCTCAGC
TCCAACCTTCCCGGTGCCAAAAATCAAAGAGTAATATTTCAATATAATAC
CACGTGATGTTAAGATGATATTAATAGATGCCGTGCTGTACTTTGGTAAA
CCACAATCGTGTCTTTGCTGGTCACCGGCACTGCTATCGAGTTGCTTGCA
CTGCCGATTGTGATATCTCCTTGGGCGAGGCATTTCAAGAACTGACTGTA
GCGCACCCTGCCTTCACCACTGAGCGAAAGACATTCATGTGGCTTGCTGT
TCTTTCCTCGTGCTATATTACTGGGTATCAAGGTCTGTCCTCCAGGGTGT
CAGGCGCTCATTAACGAGCTCTACGTTAACTGCGATTCTGTGACCATGCC
TGATGGCCGATACTACGACCCCTCCTTTTTAATCGACGGAGAGTGGTCCA
ATAACGTGAGGCTTAAATATAAA
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Coding sequence (CDS) from alignment at H-elongata_contig145831:816..1588-

>mRNA_H-elongata_contig145831.3134.1 ID=mRNA_H-elongata_contig145831.3134.1|Name=mRNA_H-elongata_contig145831.3134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig145831:816..1588- (Himanthalia elongata Himel1 dioecious)
GCATGCGTGGGGACGGTCGAGCTCATTGCGGCAAAAACTGAGAACTTTGG
AAACGATGGCGCCTGTATGCAGTGTGACCCGGCCAACAACGCATGCGTGG
GGACGGTCGAGCTCATTGCGGCAAAAACTGAGAACTTTGGAAACGATGGC
GCCTGTATGCAGTGTGACCCGGCCAACAACGTCTGTCCTCCAGGGTGTCA
GGCGCTCATTAACGAGCTCTACGTTAACTGCGATTCTGTGACCATGCCTG
ATGGCCGATACTACGACCCCTCCTTTTTAATCGACGGAGAGTGGTCCAAT
AACGTGAGGCTTAAATATAAAGTCTGTCCTCCAGGGTGTCAGGCGCTCAT
TAACGAGCTCTACGTTAACTGCGATTCTGTGACCATGCCTGATGGCCGAT
ACTACGACCCCTCCTTTTTAATCGACGGAGAGTGGTCCAATAACGTGAGG
CTTAAATATAAA
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