mRNA_H-elongata_contig145800.3132.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI) HSP 1 Score: 270 bits (689), Expect = 1.880e-89 Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1
Query: 1 YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGKQ 399
YA DVPETI +LKPCLE+NTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRT+EHILCFKSHRFEPYLVVRK+++LP FDERF GYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKT WEKTGGGKQ
Sbjct: 91 YANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTMEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQ 223
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S2UWU4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWU4_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.480e-34 Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGKQ 399
+ VP+ +T LK C C FD N G G+ W Q L I CF+S+R+EPY+V++KS LP FDERF GYGKNKIQ + HLRYSG+ FYV+P +F+IH+PHPKS A+ W+ T +Q
Sbjct: 260 SRQVPDDLTTLKNCFAMKRCNIFDHQNPRGHGSTGYKEWNYQ----EQTELREIPCFRSNRYEPYVVLKKSGGLPLFDERFVGYGKNKIQHVVHLRYSGYRFYVVPGSFIIHSPHPKSYARRKWQYTDKRQQ 387
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S4D647_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D647_HETAK) HSP 1 Score: 129 bits (325), Expect = 6.130e-33 Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 7 EDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGK 396
++VP T EL CL + C FD N +G T W+ + +L I CFKS+R+EPY ++RK +LP +DERF GYGKNKIQ + HLRY+G++F V+ +FV+HAPHPKS ++ WEK+ K
Sbjct: 313 KEVPATSLELSKCLGTRKCWIFDYHNPAGHSTTDYNKWQKQ----EESSLREISCFKSNRYEPYFILRKHPVLPLYDERFVGYGKNKIQHVLHLRYAGYTFRVLGKHFVVHAPHPKSNSRRAWEKSNHRK 438
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA) HSP 1 Score: 130 bits (328), Expect = 8.490e-33 Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEK 381
AE +P + LK C+ C FD NQ G GT W LRQ + + L HI CF S+R+EPY+V+ KS +LPAF+E+F+GYGKNKIQ + HLRY+GF F V+P +F++H PH KS A+ WE+
Sbjct: 318 AERMPTSFQRLKQCIIQKECHIFDRYNQDGHGTTDYRAW---LRQDSSQ-LRHIQCFLSNRYEPYVVLHKSPLLPAFEEKFTGYGKNKIQNLVHLRYAGFHFSVLPKSFLVHFPHHKSAARMAWEQ 439
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0Q5D9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5D9_9EUKA) HSP 1 Score: 117 bits (292), Expect = 1.750e-30 Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query: 4 AEDVPETITELKPCL---ESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
A+ +PE+ +L+ C + C F + + T Y +WR+ R I CF S R+EPYLV+ S+ P+FDERF GYGKNKIQWI HLR +GFSFYV+P FVIH PHP+S ++ WE
Sbjct: 31 AKALPESFQQLRECFRVAKPAKCRVFKSNTDTHYTTNYDKWWRAPERY-------RIQCFHSLRYEPYLVLPNSNSTPSFDERFLGYGKNKIQWIQHLRLTGFSFYVLPQAFVIHCPHPESASRQNWE 151
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S4A3V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V8_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.680e-29 Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 1
Query: 4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKT 384
A+ +P++ LK C+ + C FD N G GT W ++L+ + CF S+R+EPY+V+RKS +LP ++ERF+GYGKNKI+ I HLRY+G+ F V+ +F+ H PH KS A+ WE+T
Sbjct: 301 ADQIPDSFETLKKCIMAKDCHIFDRYNHDGHGTTDYRSWLHGF--DGGKSLKPVSCFGSNRYEPYVVLRKSPLLPMYEERFTGYGKNKIEQIVHLRYAGWRFQVLGRSFLTHFPHHKSAARVEWEET 425
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA) HSP 1 Score: 116 bits (291), Expect = 3.390e-28 Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 4 AEDVPETITELKPCLESNT---CGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVW 375
A+++PET +L+ C C F ++ + T+Y +WR+ R I CF S R+EPYLV+ + P FDERF GYGKNKIQWI HLR SGFSF+V+P FVIH PHP S ++ W
Sbjct: 296 AKELPETFGQLRECFRVGKPPRCRIFKSSTDTHLSTSYDRWWRASERY-------RISCFHSLRYEPYLVLPSRNSTPMFDERFLGYGKNKIQWIQHLRLSGFSFHVLPQAFVIHCPHPTSASRQNW 415
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A835YRB2_9STRA (Glycosyl-transferase for dystroglycan-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB2_9STRA) HSP 1 Score: 112 bits (280), Expect = 6.180e-27 Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1
Query: 4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEK 381
AE I++L CL ++ C F + G+ W Q L I CF+S R+EPYL+V K P FDERF+GYGKNKI W +HLRY GF F V+P F++H PHP S AK W++
Sbjct: 188 AEAALNDISDLAGCLLAHQCSIFYPRVPASHGSTNYTAWT------RQSALRRIPCFQSSRYEPYLIVPKGPGTPRFDERFTGYGKNKIAWTSHLRYLGFRFLVLPGAFLVHCPHPPSAAKQAWQQ 307
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S1U758_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U758_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.580e-26 Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query: 1 YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
Y + +P L+ FD T Y +++ TL ++ C S+R+EPYL+VRK+ LP FDERF+GYGKNKIQWI HLRY G++F V+P +V H PHPKS A+ WE
Sbjct: 240 YEQKIPSDKDSLRTMFIDREIHIFDEPYHGHSSTNYKLWFKQ-----RPMTLRYVQCLDSNRYEPYLIVRKTQYLPLFDERFTGYGKNKIQWILHLRYLGWAFTVLPDVYVTHLPHPKSKARKHWE 360
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0KZK0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0KZK0_9EUKA) HSP 1 Score: 105 bits (261), Expect = 1.290e-25 Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 13 VPETITELKPCLESNTCGRFDAAN--QSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
VP T+++++ C+ S C F A + ++ T Y +W + L I CFK+ R+EPY+V+ P + E F+GYGKNKI+ + HLR++GF F+ +P FV+H PHPKS K +WE
Sbjct: 51 VPRTLSQMRDCIASGQCAAFYAHSSPETHGSTPYERWWS---QAAGSEPLS-IPCFKNQRYEPYVVLPNLPSTPIYSEAFTGYGKNKIELVTHLRFAGFKFFALPAAFVVHMPHPKSDQKRLWE 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig145800.3132.1 >prot_H-elongata_contig145800.3132.1 ID=prot_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRback to top mRNA from alignment at H-elongata_contig145800:371..1476+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig145800.3132.1 ID=mRNA_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig145800:371..1476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig145800:371..1476+ >mRNA_H-elongata_contig145800.3132.1 ID=mRNA_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig145800:371..1476+ (Himanthalia elongata Himel1 dioecious)back to top |