mRNA_H-elongata_contig145765.3129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145765.3129.1
Unique NamemRNA_H-elongata_contig145765.3129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A8F0FBU9_9PHAE (Cytochrome c biogenesis protein CcsB n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FBU9_9PHAE)

HSP 1 Score: 529 bits (1363), Expect = 4.540e-187
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            MVKRFI+FLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQ+NYS+ LFNIPFWK+ILFLGLNNIYSTWWFLFLL FLGLSLA CTILQQLPTLKFSRRYYFYKQ+NQYNKLPFK NRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPI+VHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIK GFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNG+EIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKD+SEIN
Sbjct:    1 MVKRFIRFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQSNYSILLFNIPFWKVILFLGLNNIYSTWWFLFLLGFLGLSLASCTILQQLPTLKFSRRYYFYKQVNQYNKLPFKTNRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIIVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKTGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGSEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDISEIN 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A8F0F9K1_9PHAE (Cytochrome c biogenesis protein CcsB n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9K1_9PHAE)

HSP 1 Score: 473 bits (1217), Expect = 7.020e-165
Identity = 234/283 (82.69%), Postives = 259/283 (91.52%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+KRF K+LANLKLAI+IL+VIAL+SSIGS++EQSKDI FYQ NYS  +FNIPFWKI+LFLG NNIYSTWWFL LL  LGLSLACCTILQQLPTLKFSRRYYFYKQ+NQY KL FKI  IKVFPSHLSY L+ K+YSLFQQSNSFYAYKGLISR+GPIVVHLSIIC+LLG T+GAL GFNSQELIPKTEVFHIQN+IKNGFFS IPQKTFRINDFWS+Y S G IKQFYTDIS+LNG+G E +RKTISVNNPLLLS+LIIYQTDWGILGLRLK+IKK++S I+
Sbjct:    1 MIKRFFKYLANLKLAIVILIVIALLSSIGSIVEQSKDILFYQKNYSTLIFNIPFWKILLFLGFNNIYSTWWFLLLLGILGLSLACCTILQQLPTLKFSRRYYFYKQVNQYKKLTFKIKAIKVFPSHLSYTLLKKEYSLFQQSNSFYAYKGLISRLGPIVVHLSIICILLGSTVGALKGFNSQELIPKTEVFHIQNVIKNGFFSLIPQKTFRINDFWSIYNSTGSIKQFYTDISILNGDGTETQRKTISVNNPLLLSDLIIYQTDWGILGLRLKFIKKNISNIS 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A8F0F7S4_9PHAE (Cytochrome c biogenesis protein CcsB n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S4_9PHAE)

HSP 1 Score: 466 bits (1198), Expect = 5.060e-162
Identity = 229/283 (80.92%), Postives = 257/283 (90.81%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+KRF ++LANLKLAI+ILL IA+V+SIGSVIEQS+++ FYQ NY   +  IPFWKI+LFLG NNIYSTWWFL LL+ LGLSLACCT+LQQLPTLKFSRRYYFYKQ+NQYNKL FKI  IKVFPSHLSY L+ KQYSLFQQSNSFYAYKGLISR+GPI+VHLSIICVLLG +LGAL GFNSQELIPKTEVFHIQN+IKNGFFSSIPQKTFRINDFWS+YTSNG IKQFYTD+SVLNG+G E++RKTISVNNPLLL++LIIYQTDWGILGLRLKY K   S ++
Sbjct:    1 MIKRFFRYLANLKLAIVILLAIAIVTSIGSVIEQSREVSFYQQNYPTLILTIPFWKILLFLGFNNIYSTWWFLLLLSLLGLSLACCTVLQQLPTLKFSRRYYFYKQVNQYNKLTFKIKAIKVFPSHLSYTLLQKQYSLFQQSNSFYAYKGLISRVGPIIVHLSIICVLLGSSLGALKGFNSQELIPKTEVFHIQNVIKNGFFSSIPQKTFRINDFWSIYTSNGSIKQFYTDVSVLNGHGIEVQRKTISVNNPLLLNDLIIYQTDWGILGLRLKYNKNGTSWVS 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A516ICN0_9PHAE (Cytochrome c biogenesis protein CcsB n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICN0_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 5.860e-161
Identity = 230/283 (81.27%), Postives = 256/283 (90.46%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+KR  K+LANL+LAIIILL IA+V+SIGS+IEQ+K+I FYQNNY   +F+IPFWKI+LF G +NIYSTWWFL LL+ LGLSLACCT+LQQLPTLKFSRRYYFYKQ+NQYNKL FKI  IKVFPSHLSY L+ K+YSLFQQSNSFYAYKGLISR+GPI+VHLSIICVLLG TLGAL GFNSQELIPKTEVFHIQN+IKNG FSSIPQKTFRINDFWS YTSNG IKQFYTD+SVLNG G E +RKTISVNNPLLL++LIIYQTDWGILGLRLKY+K D S I+
Sbjct:    1 MIKRVFKYLANLQLAIIILLAIAIVTSIGSIIEQNKEILFYQNNYPTLIFSIPFWKILLFFGFDNIYSTWWFLLLLSLLGLSLACCTVLQQLPTLKFSRRYYFYKQVNQYNKLTFKIKSIKVFPSHLSYVLLKKEYSLFQQSNSFYAYKGLISRVGPIIVHLSIICVLLGSTLGALEGFNSQELIPKTEVFHIQNVIKNGVFSSIPQKTFRINDFWSTYTSNGSIKQFYTDVSVLNGRGGETQRKTISVNNPLLLNDLIIYQTDWGILGLRLKYVKNDNSIIS 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A1I9LVB8_9PHAE (Cytochrome c biogenesis protein Ccs1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVB8_9PHAE)

HSP 1 Score: 462 bits (1189), Expect = 1.220e-160
Identity = 228/283 (80.57%), Postives = 258/283 (91.17%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+K F K+LANLKLAI+ILLVI++V  IG++IEQ+K++ FYQ NYS+ +F+IP WKIILFLG +NIYSTWWFL LL+ LGLSLACCTI+QQLPTLKFSRRYYFYKQINQYNKL  KIN IKVFPSHLS+ L+ KQYSLFQQ NSFYAYKGLISR+GPIVVH+SIICVLLG T+GAL GFNSQELIPKTEVFHIQN+IKNGFFSSIPQKTFRINDFWS+YT+NG IKQFY+DIS+LNG G E++RKTISVNNPLLL  LI+YQTDWGILGLRLKYIKKD S+IN
Sbjct:    1 MIKHFFKYLANLKLAILILLVISVVIGIGTIIEQNKELLFYQKNYSILIFSIPLWKIILFLGFDNIYSTWWFLLLLSILGLSLACCTIIQQLPTLKFSRRYYFYKQINQYNKLQVKINAIKVFPSHLSHTLLNKQYSLFQQFNSFYAYKGLISRVGPIVVHISIICVLLGSTVGALTGFNSQELIPKTEVFHIQNVIKNGFFSSIPQKTFRINDFWSIYTTNGLIKQFYSDISILNGGGKELQRKTISVNNPLLLKELIVYQTDWGILGLRLKYIKKDTSKIN 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A6G6D7H5_ECTSI (Cytochrome c biogenesis protein CcsB n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D7H5_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 2.850e-159
Identity = 227/282 (80.50%), Postives = 255/282 (90.43%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEI 846
            M+KRF K+LANLKLAIIILL+I+LV SIG++IEQ+K+I FYQ NYS  +FN+P WK+ILFLGLNNIYSTWWFL LL  LGLSLACCT++QQLPTLKFSRRYYFYKQ+NQY KL  KIN IKVFPSHLS+ L+ K+YSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLG TLGAL GFNSQELIPKTE+FHIQN+IKNGFFSSIPQKTFR+NDFWS+YT +G IKQFYTDIS+LNG G EI+RKTISVNNPLLL +LIIYQTDWGILGLRLKY    +S++
Sbjct:    1 MIKRFFKYLANLKLAIIILLIISLVISIGTIIEQNKEILFYQKNYSALIFNLPLWKVILFLGLNNIYSTWWFLLLLGILGLSLACCTMIQQLPTLKFSRRYYFYKQVNQYKKLQIKINAIKVFPSHLSHTLLDKEYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGSTLGALKGFNSQELIPKTELFHIQNVIKNGFFSSIPQKTFRVNDFWSIYTPSGLIKQFYTDISILNGGGKEIQRKTISVNNPLLLKDLIIYQTDWGILGLRLKYTNDSISKL 282          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A6B7EXL7_9PHAE (Cytochrome c biogenesis protein CcsB n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXL7_9PHAE)

HSP 1 Score: 459 bits (1180), Expect = 2.850e-159
Identity = 227/283 (80.21%), Postives = 254/283 (89.75%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+KRF K+LANLKLAI+ILLVI+LV SIG++IEQ+K+I FYQ NYS  +FN+P W+I+LF GLNNIYS WWF FLL  LGLSLACCTI+QQLPTLKFSRRYYFYKQINQYNKL  KIN IKVFPSHLS+ L+ KQYSLFQQSNSFYAYKGLISR+GPIVVHLSIIC+L G TLGAL GFNSQELIPKTEVFHIQN+IKNGFFSSI QKTFR+NDFWS+YT+NG IKQFYTD S+LNGNG EI+RKTISVNNPLLL +LIIYQTDWGILGLRLKY K + S ++
Sbjct:    1 MIKRFFKYLANLKLAILILLVISLVISIGTIIEQNKEIIFYQKNYSTLIFNLPLWRILLFFGLNNIYSAWWFFFLLGLLGLSLACCTIIQQLPTLKFSRRYYFYKQINQYNKLQTKINAIKVFPSHLSHTLLNKQYSLFQQSNSFYAYKGLISRVGPIVVHLSIICILAGSTLGALKGFNSQELIPKTEVFHIQNVIKNGFFSSINQKTFRVNDFWSIYTTNGLIKQFYTDFSILNGNGKEIQRKTISVNNPLLLKDLIIYQTDWGILGLRLKYFKDNTSRVS 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A344PF95_9PHAE (Cytochrome c biogenesis protein CcsB n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PF95_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 2.330e-158
Identity = 225/283 (79.51%), Postives = 255/283 (90.11%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN 849
            M+KRF K+LANLKLAI+ILLVI++V SIG+VIEQ+++I FYQ +YS  +F +P WKI+LF GLNNIYSTWWFL LL  LGLSLACCTI+QQLPTLKFSRRYYFYKQINQYNKL  KIN IKVFPSHL + L+ KQYSLFQQ+NSFYAYKGLISR+GPI+VHLSIICVLLG TLGAL GFNSQELIPKTEVFHIQN+IKNG FSS+PQKTFR+NDFWS+YTSNG IKQFYTD+S+LNG G E++RKTISVNNPLLL +LIIYQTDWGILGLRLKYIK   S+I+
Sbjct:    1 MIKRFFKYLANLKLAILILLVISVVISIGTVIEQNREILFYQKSYSTLIFTVPVWKILLFFGLNNIYSTWWFLLLLGLLGLSLACCTIIQQLPTLKFSRRYYFYKQINQYNKLQIKINAIKVFPSHLGHTLLNKQYSLFQQANSFYAYKGLISRVGPIIVHLSIICVLLGSTLGALKGFNSQELIPKTEVFHIQNLIKNGVFSSVPQKTFRVNDFWSIYTSNGLIKQFYTDLSILNGQGKEVQRKTISVNNPLLLQDLIIYQTDWGILGLRLKYIKNTTSKIS 283          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A2R4QPS3_9PHAE (Cytochrome c biogenesis protein CcsB n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS3_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 1.860e-154
Identity = 224/278 (80.58%), Postives = 249/278 (89.57%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKD 834
            M+KR  K+LANLKLAI+ILL+IA+V SIGS IEQ+K+IQFYQN Y + +F+IPFWKII+FLG NNIYSTWWFL LL   G+SLACCTILQQLPTLKFSRRYYFYKQ NQYNKL F IN  KVFP+HLSY LI KQYSLFQQSN+FYAYKGLISRIGPI+VH+SIIC+LLG TLG+LNGFNSQE+IPKTEVFHIQNII+NG FSSIPQKTFRINDFWS+YTSNG IKQFYTDIS+LNG G E +RKTISVNNPLLL +LIIYQTDWGILGLRLK   K+
Sbjct:    1 MIKRIFKYLANLKLAILILLLIAVVISIGSFIEQNKEIQFYQNTYLIQIFSIPFWKIIIFLGFNNIYSTWWFLILLMLFGVSLACCTILQQLPTLKFSRRYYFYKQKNQYNKLTFTINSSKVFPTHLSYNLINKQYSLFQQSNTFYAYKGLISRIGPIIVHISIICILLGSTLGSLNGFNSQEIIPKTEVFHIQNIIRNGIFSSIPQKTFRINDFWSIYTSNGFIKQFYTDISLLNGQGLETQRKTISVNNPLLLKDLIIYQTDWGILGLRLKSNSKN 278          
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Match: A0A1L2F1R6_9PHAE (Cytochrome c biogenesis protein CcsB n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1R6_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 4.750e-154
Identity = 221/280 (78.93%), Postives = 250/280 (89.29%), Query Frame = 1
Query:    1 MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLFNIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRRYYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKGLISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNGFFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVNNPLLLSNLIIYQTDWGILGLRLKYIKKDVS 840
            M+KR  K+LANLKLAIIILL+I+L+ SIGS+IEQ+K+++FYQ +Y  +++ +PFWKIILFLG NNIY+TWWFL LL   G SLA CTILQQLPTLKFSRRYYFYKQ+NQY KLPFKINR KVF +HLSYALI KQYSL+QQ NS YAYKGLISR+GPI+VHLSIIC+LLG TLG++NGFNSQELIPKTEVFHIQNI++NG FSSIPQKTFRINDFWS+YTSNG IKQFYTDISVLNG G E +RKTISVNNPLLL NLIIYQTDWGILGLRLKY  K+ S
Sbjct:    1 MIKRVFKYLANLKLAIIILLLISLLISIGSIIEQNKEVEFYQGHYLKTIYMVPFWKIILFLGFNNIYNTWWFLVLLFLFGSSLASCTILQQLPTLKFSRRYYFYKQVNQYKKLPFKINRNKVFSTHLSYALINKQYSLYQQYNSLYAYKGLISRVGPIIVHLSIICILLGSTLGSINGFNSQELIPKTEVFHIQNIVRNGIFSSIPQKTFRINDFWSIYTSNGLIKQFYTDISVLNGQGIETQRKTISVNNPLLLKNLIIYQTDWGILGLRLKYFTKNNS 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145765.3129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FBU9_9PHAE4.540e-18795.41Cytochrome c biogenesis protein CcsB n=1 Tax=Desma... [more]
A0A8F0F9K1_9PHAE7.020e-16582.69Cytochrome c biogenesis protein CcsB n=1 Tax=Chord... [more]
A0A8F0F7S4_9PHAE5.060e-16280.92Cytochrome c biogenesis protein CcsB n=2 Tax=Lamin... [more]
A0A516ICN0_9PHAE5.860e-16181.27Cytochrome c biogenesis protein CcsB n=27 Tax=Lami... [more]
A0A1I9LVB8_9PHAE1.220e-16080.57Cytochrome c biogenesis protein Ccs1 n=1 Tax=Pleur... [more]
A0A6G6D7H5_ECTSI2.850e-15980.50Cytochrome c biogenesis protein CcsB n=2 Tax=Ectoc... [more]
A0A6B7EXL7_9PHAE2.850e-15980.21Cytochrome c biogenesis protein CcsB n=1 Tax=Clado... [more]
A0A344PF95_9PHAE2.330e-15879.51Cytochrome c biogenesis protein CcsB n=5 Tax=Scyto... [more]
A0A2R4QPS3_9PHAE1.860e-15480.58Cytochrome c biogenesis protein CcsB n=3 Tax=Fucac... [more]
A0A1L2F1R6_9PHAE4.750e-15478.93Cytochrome c biogenesis protein CcsB n=14 Tax=Sarg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145765contigH-elongata_contig145765:791..1639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score457.6
Seed ortholog evalue4.2e-126
Seed eggNOG ortholog2880.D1J782
Preferred nameccs1
KEGG koko:K07399
EggNOG free text desc.cytochrome complex assembly
EggNOG OGs2QRFF@2759,COG1333@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons1
Model size849
Cds size849
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.5059927-CDS-H-elongata_contig145765:790..16391622929867.5059927-CDS-H-elongata_contig145765:790..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145765 791..1639 +
1691679188.2284224-CDS-H-elongata_contig145765:790..16391691679188.2284224-CDS-H-elongata_contig145765:790..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145765 791..1639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145765.3129.1prot_H-elongata_contig145765.3129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145765 791..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145765.3129.1

>prot_H-elongata_contig145765.3129.1 ID=prot_H-elongata_contig145765.3129.1|Name=mRNA_H-elongata_contig145765.3129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
MVKRFIKFLANLKLAIIILLVIALVSSIGSVIEQSKDIQFYQNNYSLSLF
NIPFWKIILFLGLNNIYSTWWFLFLLAFLGLSLACCTILQQLPTLKFSRR
YYFYKQINQYNKLPFKINRIKVFPSHLSYALITKQYSLFQQSNSFYAYKG
LISRIGPIVVHLSIICVLLGGTLGALNGFNSQELIPKTEVFHIQNIIKNG
FFSSIPQKTFRINDFWSLYTSNGDIKQFYTDISVLNGNGAEIKRKTISVN
NPLLLSNLIIYQTDWGILGLRLKYIKKDVSEIN
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mRNA from alignment at H-elongata_contig145765:791..1639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145765.3129.1 ID=mRNA_H-elongata_contig145765.3129.1|Name=mRNA_H-elongata_contig145765.3129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at H-elongata_contig145765:791..1639+ (Himanthalia elongata Himel1 dioecious)
ATGGTTAAGCGATTCATTAAATTTCTCGCTAATTTAAAATTAGCAATAAT AATATTATTAGTTATTGCATTAGTTAGCAGTATTGGCTCGGTTATTGAGC AAAGTAAAGATATTCAATTCTACCAAAATAATTATTCGCTATCACTTTTT AATATACCCTTTTGGAAAATTATTCTTTTTTTGGGTTTGAATAATATTTA TAGTACATGGTGGTTCCTATTTTTATTAGCATTCTTAGGTCTTTCGTTAG CTTGTTGTACTATTCTTCAACAATTACCAACTTTAAAATTTTCTAGACGA TATTATTTTTACAAGCAAATAAATCAATATAATAAATTACCTTTTAAAAT AAATCGCATTAAAGTATTTCCTAGTCACTTAAGTTATGCTTTAATAACTA AACAATATTCACTTTTTCAGCAATCTAATAGTTTCTATGCTTATAAAGGA TTGATAAGTAGAATTGGTCCTATAGTTGTACATTTAAGTATTATTTGTGT TTTATTAGGTGGAACTTTAGGTGCATTAAACGGCTTTAATTCACAAGAAT TAATCCCTAAAACTGAAGTATTTCATATTCAAAATATTATAAAAAATGGT TTTTTTTCGTCTATTCCTCAAAAAACTTTTCGTATTAATGATTTTTGGTC ACTTTATACTTCAAATGGGGATATTAAACAATTTTATACGGATATTTCAG TTTTAAATGGTAATGGGGCAGAAATTAAAAGAAAAACTATTTCAGTAAAT AATCCATTACTTTTAAGTAATTTAATAATTTACCAAACGGATTGGGGAAT ATTAGGGTTAAGATTGAAATATATTAAAAAAGATGTTTCTGAAATAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig145765:791..1639+

>mRNA_H-elongata_contig145765.3129.1 ID=mRNA_H-elongata_contig145765.3129.1|Name=mRNA_H-elongata_contig145765.3129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig145765:791..1639+ (Himanthalia elongata Himel1 dioecious)
ATGGTTAAGCGATTCATTAAATTTCTCGCTAATTTAAAATTAGCAATAAT
AATATTATTAGTTATTGCATTAGTTAGCAGTATTGGCTCGGTTATTGAGC
AAAGTAAAGATATTCAATTCTACCAAAATAATTATTCGCTATCACTTTTT
AATATACCCTTTTGGAAAATTATTCTTTTTTTGGGTTTGAATAATATTTA
TAGTACATGGTGGTTCCTATTTTTATTAGCATTCTTAGGTCTTTCGTTAG
CTTGTTGTACTATTCTTCAACAATTACCAACTTTAAAATTTTCTAGACGA
TATTATTTTTACAAGCAAATAAATCAATATAATAAATTACCTTTTAAAAT
AAATCGCATTAAAGTATTTCCTAGTCACTTAAGTTATGCTTTAATAACTA
AACAATATTCACTTTTTCAGCAATCTAATAGTTTCTATGCTTATAAAGGA
TTGATAAGTAGAATTGGTCCTATAGTTGTACATTTAAGTATTATTTGTGT
TTTATTAGGTGGAACTTTAGGTGCATTAAACGGCTTTAATTCACAAGAAT
TAATCCCTAAAACTGAAGTATTTCATATTCAAAATATTATAAAAAATGGT
TTTTTTTCGTCTATTCCTCAAAAAACTTTTCGTATTAATGATTTTTGGTC
ACTTTATACTTCAAATGGGGATATTAAACAATTTTATACGGATATTTCAG
TTTTAAATGGTAATGGGGCAGAAATTAAAAGAAAAACTATTTCAGTAAAT
AATCCATTACTTTTAAGTAATTTAATAATTTACCAAACGGATTGGGGAAT
ATTAGGGTTAAGATTGAAATATATTAAAAAAGATGTTTCTGAAATAAATA
TGGTTAAGCGATTCATTAAATTTCTCGCTAATTTAAAATTAGCAATAATA
ATATTATTAGTTATTGCATTAGTTAGCAGTATTGGCTCGGTTATTGAGCA
AAGTAAAGATATTCAATTCTACCAAAATAATTATTCGCTATCACTTTTTA
ATATACCCTTTTGGAAAATTATTCTTTTTTTGGGTTTGAATAATATTTAT
AGTACATGGTGGTTCCTATTTTTATTAGCATTCTTAGGTCTTTCGTTAGC
TTGTTGTACTATTCTTCAACAATTACCAACTTTAAAATTTTCTAGACGAT
ATTATTTTTACAAGCAAATAAATCAATATAATAAATTACCTTTTAAAATA
AATCGCATTAAAGTATTTCCTAGTCACTTAAGTTATGCTTTAATAACTAA
ACAATATTCACTTTTTCAGCAATCTAATAGTTTCTATGCTTATAAAGGAT
TGATAAGTAGAATTGGTCCTATAGTTGTACATTTAAGTATTATTTGTGTT
TTATTAGGTGGAACTTTAGGTGCATTAAACGGCTTTAATTCACAAGAATT
AATCCCTAAAACTGAAGTATTTCATATTCAAAATATTATAAAAAATGGTT
TTTTTTCGTCTATTCCTCAAAAAACTTTTCGTATTAATGATTTTTGGTCA
CTTTATACTTCAAATGGGGATATTAAACAATTTTATACGGATATTTCAGT
TTTAAATGGTAATGGGGCAGAAATTAAAAGAAAAACTATTTCAGTAAATA
ATCCATTACTTTTAAGTAATTTAATAATTTACCAAACGGATTGGGGAATA
TTAGGGTTAAGATTGAAATATATTAAAAAAGATGTTTCTGAAATAAAT
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